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Protein

Uncharacterized protein YcaC

Gene

ycaC

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei118Sequence analysis1

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Hydrolase

Enzyme and pathway databases

BioCyciEcoCyc:EG11241-MONOMER.
ECOL316407:JW0880-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YcaC
Gene namesi
Name:ycaC
Ordered Locus Names:b0897, JW0880
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11241. ycaC.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: UniProtKB
  • membrane Source: UniProtKB
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001687531 – 208Uncharacterized protein YcaCAdd BLAST208

Proteomic databases

PaxDbiP21367.
PRIDEiP21367.

Interactioni

Subunit structurei

Homooctamer composed of two tetrameric rings.

Protein-protein interaction databases

BioGridi4259587. 14 interactors.
DIPiDIP-11462N.
IntActiP21367. 3 interactors.
STRINGi511145.b0897.

Structurei

Secondary structure

1208
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi12 – 18Combined sources7
Helixi24 – 27Combined sources4
Helixi33 – 49Combined sources17
Beta strandi54 – 60Combined sources7
Turni61 – 65Combined sources5
Helixi70 – 75Combined sources6
Beta strandi81 – 86Combined sources6
Helixi90 – 92Combined sources3
Helixi94 – 102Combined sources9
Beta strandi106 – 114Combined sources9
Helixi115 – 119Combined sources5
Helixi120 – 128Combined sources9
Beta strandi132 – 136Combined sources5
Helixi145 – 158Combined sources14
Beta strandi161 – 163Combined sources3
Helixi165 – 173Combined sources9
Helixi176 – 178Combined sources3
Helixi180 – 190Combined sources11
Helixi192 – 204Combined sources13

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1YACX-ray1.80A/B1-208[»]
ProteinModelPortaliP21367.
SMRiP21367.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP21367.

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4105CHJ. Bacteria.
COG1335. LUCA.
HOGENOMiHOG000167093.
InParanoidiP21367.
OMAiMYPDAPL.
PhylomeDBiP21367.

Family and domain databases

Gene3Di3.40.50.850. 1 hit.
InterProiIPR000868. Isochorismatase-like.
[Graphical view]
PfamiPF00857. Isochorismatase. 1 hit.
[Graphical view]
SUPFAMiSSF52499. SSF52499. 1 hit.

Sequencei

Sequence statusi: Complete.

P21367-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTKPYVRLDK NDAAVLLVDH QAGLLSLVRD IEPDKFKNNV LALGDLAKYF
60 70 80 90 100
NLPTILTTSF ETGPNGPLVP ELKAQFPDTP YIARPGNINA WDNEDFVKAV
110 120 130 140 150
KATGKKQLII AGVVTEVCVA FPALSAIEEG FDVFVVTDAS GTFNEITRHS
160 170 180 190 200
AWDRLSQAGA QLMTWFGVAC ELHRDWRNDI EGLATLFSNH IPDYRNLMTS

YDTLTKQK
Length:208
Mass (Da):23,100
Last modified:May 1, 1991 - v1
Checksum:i5FB5A4F0CC049BEB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
J03412 Genomic DNA. Translation: AAA83846.1.
U00096 Genomic DNA. Translation: AAC73983.1.
AP009048 Genomic DNA. Translation: BAA35629.1.
PIRiS09671.
RefSeqiNP_415417.1. NC_000913.3.
WP_000165879.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73983; AAC73983; b0897.
BAA35629; BAA35629; BAA35629.
GeneIDi945512.
KEGGiecj:JW0880.
eco:b0897.
PATRICi32117005. VBIEscCol129921_0927.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
J03412 Genomic DNA. Translation: AAA83846.1.
U00096 Genomic DNA. Translation: AAC73983.1.
AP009048 Genomic DNA. Translation: BAA35629.1.
PIRiS09671.
RefSeqiNP_415417.1. NC_000913.3.
WP_000165879.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1YACX-ray1.80A/B1-208[»]
ProteinModelPortaliP21367.
SMRiP21367.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259587. 14 interactors.
DIPiDIP-11462N.
IntActiP21367. 3 interactors.
STRINGi511145.b0897.

Proteomic databases

PaxDbiP21367.
PRIDEiP21367.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73983; AAC73983; b0897.
BAA35629; BAA35629; BAA35629.
GeneIDi945512.
KEGGiecj:JW0880.
eco:b0897.
PATRICi32117005. VBIEscCol129921_0927.

Organism-specific databases

EchoBASEiEB1223.
EcoGeneiEG11241. ycaC.

Phylogenomic databases

eggNOGiENOG4105CHJ. Bacteria.
COG1335. LUCA.
HOGENOMiHOG000167093.
InParanoidiP21367.
OMAiMYPDAPL.
PhylomeDBiP21367.

Enzyme and pathway databases

BioCyciEcoCyc:EG11241-MONOMER.
ECOL316407:JW0880-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP21367.
PROiP21367.

Family and domain databases

Gene3Di3.40.50.850. 1 hit.
InterProiIPR000868. Isochorismatase-like.
[Graphical view]
PfamiPF00857. Isochorismatase. 1 hit.
[Graphical view]
SUPFAMiSSF52499. SSF52499. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYCAC_ECOLI
AccessioniPrimary (citable) accession number: P21367
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 1, 1991
Last sequence update: May 1, 1991
Last modified: November 2, 2016
This is version 117 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.