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P21362

- YCIF_ECOLI

UniProt

P21362 - YCIF_ECOLI

Protein

Protein YciF

Gene

yciF

Organism
Escherichia coli (strain K12)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
  1. Functioni

    GO - Biological processi

    1. cellular response to DNA damage stimulus Source: EcoliWiki

    Enzyme and pathway databases

    BioCyciEcoCyc:EG11126-MONOMER.
    ECOL316407:JW1250-MONOMER.
    RETL1328306-WGS:GSTH-271-MONOMER.
    RETL1328306-WGS:GSTH-4294-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Protein YciF
    Gene namesi
    Name:yciF
    Ordered Locus Names:b1258, JW1250
    OrganismiEscherichia coli (strain K12)
    Taxonomic identifieri83333 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
    ProteomesiUP000000318: Chromosome, UP000000625: Chromosome

    Organism-specific databases

    EcoGeneiEG11126. yciF.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 166166Protein YciFPRO_0000168874Add
    BLAST

    Proteomic databases

    PaxDbiP21362.
    PRIDEiP21362.

    Expressioni

    Gene expression databases

    GenevestigatoriP21362.

    Interactioni

    Subunit structurei

    Homodimer.1 Publication

    Protein-protein interaction databases

    DIPiDIP-11580N.
    IntActiP21362. 6 interactions.
    STRINGi511145.b1258.

    Structurei

    Secondary structure

    1
    166
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Helixi6 – 3328
    Helixi38 – 6326
    Helixi76 – 8914
    Helixi95 – 12632
    Helixi130 – 15930

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    2GS4X-ray2.00A/B1-166[»]
    ProteinModelPortaliP21362.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiP21362.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3685.
    HOGENOMiHOG000025592.
    OMAiERINTEG.
    OrthoDBiEOG6MSS3K.
    PhylomeDBiP21362.

    Family and domain databases

    Gene3Di1.20.1260.10. 1 hit.
    InterProiIPR010287. DUF892.
    IPR009078. Ferritin-like_SF.
    IPR012347. Ferritin-rel.
    [Graphical view]
    PfamiPF05974. DUF892. 1 hit.
    [Graphical view]
    SUPFAMiSSF47240. SSF47240. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    P21362-1 [UniParc]FASTAAdd to Basket

    « Hide

    MNMKTIEDVF IHLLSDTYSA EKQLTRALAK LARATSNEKL SQAFHAHLEE    50
    THGQIERIDQ VVESESNLKI KRMKCVAMEG LIEEANEVIE STEKNEVRDA 100
    ALIAAAQKVE HYEIASYGTL ATLAEQLGYR KAAKLLKETL EEEKATDIKL 150
    TDLAINNVNK KAENKA 166
    Length:166
    Mass (Da):18,597
    Last modified:May 1, 1991 - v1
    Checksum:i86A4B76DD8FC5EB2
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X13583 Genomic DNA. Translation: CAA31920.1.
    U25417 Genomic DNA. Translation: AAA73793.1.
    U25419 Genomic DNA. Translation: AAA73805.1.
    U25420 Genomic DNA. Translation: AAA73811.1.
    U25421 Genomic DNA. Translation: AAA73817.1.
    U25423 Genomic DNA. Translation: AAA73829.1.
    U25427 Genomic DNA. Translation: AAA73847.1.
    U23489 Genomic DNA. Translation: AAB60037.1.
    U23490 Genomic DNA. Translation: AAA65142.1.
    U23491 Genomic DNA. Translation: AAA65148.1.
    U23492 Genomic DNA. Translation: AAA65154.1.
    U00096 Genomic DNA. Translation: AAC74340.1.
    AP009048 Genomic DNA. Translation: BAA14790.1.
    AF062842 Genomic DNA. Translation: AAC16348.1.
    PIRiS07795.
    RefSeqiNP_415774.1. NC_000913.3.
    YP_489526.1. NC_007779.1.

    Genome annotation databases

    EnsemblBacteriaiAAC74340; AAC74340; b1258.
    BAA14790; BAA14790; BAA14790.
    GeneIDi12931660.
    947133.
    KEGGiecj:Y75_p1232.
    eco:b1258.
    PATRICi32117776. VBIEscCol129921_1308.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X13583 Genomic DNA. Translation: CAA31920.1 .
    U25417 Genomic DNA. Translation: AAA73793.1 .
    U25419 Genomic DNA. Translation: AAA73805.1 .
    U25420 Genomic DNA. Translation: AAA73811.1 .
    U25421 Genomic DNA. Translation: AAA73817.1 .
    U25423 Genomic DNA. Translation: AAA73829.1 .
    U25427 Genomic DNA. Translation: AAA73847.1 .
    U23489 Genomic DNA. Translation: AAB60037.1 .
    U23490 Genomic DNA. Translation: AAA65142.1 .
    U23491 Genomic DNA. Translation: AAA65148.1 .
    U23492 Genomic DNA. Translation: AAA65154.1 .
    U00096 Genomic DNA. Translation: AAC74340.1 .
    AP009048 Genomic DNA. Translation: BAA14790.1 .
    AF062842 Genomic DNA. Translation: AAC16348.1 .
    PIRi S07795.
    RefSeqi NP_415774.1. NC_000913.3.
    YP_489526.1. NC_007779.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    2GS4 X-ray 2.00 A/B 1-166 [» ]
    ProteinModelPortali P21362.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    DIPi DIP-11580N.
    IntActi P21362. 6 interactions.
    STRINGi 511145.b1258.

    Proteomic databases

    PaxDbi P21362.
    PRIDEi P21362.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAC74340 ; AAC74340 ; b1258 .
    BAA14790 ; BAA14790 ; BAA14790 .
    GeneIDi 12931660.
    947133.
    KEGGi ecj:Y75_p1232.
    eco:b1258.
    PATRICi 32117776. VBIEscCol129921_1308.

    Organism-specific databases

    EchoBASEi EB1116.
    EcoGenei EG11126. yciF.

    Phylogenomic databases

    eggNOGi COG3685.
    HOGENOMi HOG000025592.
    OMAi ERINTEG.
    OrthoDBi EOG6MSS3K.
    PhylomeDBi P21362.

    Enzyme and pathway databases

    BioCyci EcoCyc:EG11126-MONOMER.
    ECOL316407:JW1250-MONOMER.
    RETL1328306-WGS:GSTH-271-MONOMER.
    RETL1328306-WGS:GSTH-4294-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei P21362.
    PROi P21362.

    Gene expression databases

    Genevestigatori P21362.

    Family and domain databases

    Gene3Di 1.20.1260.10. 1 hit.
    InterProi IPR010287. DUF892.
    IPR009078. Ferritin-like_SF.
    IPR012347. Ferritin-rel.
    [Graphical view ]
    Pfami PF05974. DUF892. 1 hit.
    [Graphical view ]
    SUPFAMi SSF47240. SSF47240. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Molecular evolution of the Escherichia coli chromosome. I. Analysis of structure and natural variation in a previously uncharacterized region between trp and tonB."
      Stoltzfus A., Leslie J.F., Milkman R.
      Genetics 120:345-358(1988) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
      Strain: K12.
    2. Milkman R.
      Submitted (MAR-1995) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
      Strain: K12 and Various ECOR strains.
    3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
    4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K12 / MG1655 / ATCC 47076.
    5. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
      Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
      Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
    6. "Function of the Escherichia coli nucleoid protein, H-NS: molecular analysis of a subset of proteins whose expression is enhanced in a hns deletion mutant."
      Yoshida T., Ueguchi C., Yamada H., Mizuno T.
      Mol. Gen. Genet. 237:113-122(1993) [PubMed] [Europe PMC] [Abstract]
      Cited for: PROTEIN SEQUENCE OF 1-20.
      Strain: K12.
    7. Pinou T., Riley M.A.
      Submitted (MAY-1998) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 61-148.
      Strain: 976-L14.
    8. "The crystal structure of the E. coli stress protein yciF."
      Hindupur A., Liu D., Zhao Y., Bellamy H.D., White M.A., Fox R.O.
      Protein Sci. 15:2605-2611(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (2.0 ANGSTROMS), SUBUNIT.

    Entry informationi

    Entry nameiYCIF_ECOLI
    AccessioniPrimary (citable) accession number: P21362
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 1, 1991
    Last sequence update: May 1, 1991
    Last modified: October 1, 2014
    This is version 113 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

    Documents

    1. Escherichia coli
      Escherichia coli (strain K12): entries and cross-references to EcoGene
    2. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references

    External Data

    Dasty 3