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Protein

Protein YciF

Gene

yciF

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Biological processi

  • cellular response to DNA damage stimulus Source: EcoliWiki

Enzyme and pathway databases

BioCyciEcoCyc:EG11126-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Protein YciF
Gene namesi
Name:yciF
Ordered Locus Names:b1258, JW1250
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11126 yciF

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001688741 – 166Protein YciFAdd BLAST166

Proteomic databases

PaxDbiP21362
PRIDEiP21362

Interactioni

Subunit structurei

Homodimer.1 Publication

Protein-protein interaction databases

BioGridi4260654, 18 interactors
DIPiDIP-11580N
IntActiP21362, 6 interactors
STRINGi316385.ECDH10B_1373

Structurei

Secondary structure

1166
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi6 – 33Combined sources28
Helixi38 – 63Combined sources26
Helixi76 – 89Combined sources14
Helixi95 – 126Combined sources32
Helixi130 – 159Combined sources30

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2GS4X-ray2.00A/B1-166[»]
ProteinModelPortaliP21362
SMRiP21362
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP21362

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4108Z9Z Bacteria
COG3685 LUCA
HOGENOMiHOG000025592
InParanoidiP21362
OMAiAKTCEAM
PhylomeDBiP21362

Family and domain databases

Gene3Di1.20.1260.10, 1 hit
InterProiView protein in InterPro
IPR010287 DUF892
IPR012347 Ferritin-like
IPR009078 Ferritin-like_SF
PfamiView protein in Pfam
PF05974 DUF892, 1 hit
SUPFAMiSSF47240 SSF47240, 1 hit

Sequencei

Sequence statusi: Complete.

P21362-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNMKTIEDVF IHLLSDTYSA EKQLTRALAK LARATSNEKL SQAFHAHLEE
60 70 80 90 100
THGQIERIDQ VVESESNLKI KRMKCVAMEG LIEEANEVIE STEKNEVRDA
110 120 130 140 150
ALIAAAQKVE HYEIASYGTL ATLAEQLGYR KAAKLLKETL EEEKATDIKL
160
TDLAINNVNK KAENKA
Length:166
Mass (Da):18,597
Last modified:May 1, 1991 - v1
Checksum:i86A4B76DD8FC5EB2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X13583 Genomic DNA Translation: CAA31920.1
U25417 Genomic DNA Translation: AAA73793.1
U25419 Genomic DNA Translation: AAA73805.1
U25420 Genomic DNA Translation: AAA73811.1
U25421 Genomic DNA Translation: AAA73817.1
U25423 Genomic DNA Translation: AAA73829.1
U25427 Genomic DNA Translation: AAA73847.1
U23489 Genomic DNA Translation: AAB60037.1
U23490 Genomic DNA Translation: AAA65142.1
U23491 Genomic DNA Translation: AAA65148.1
U23492 Genomic DNA Translation: AAA65154.1
U00096 Genomic DNA Translation: AAC74340.1
AP009048 Genomic DNA Translation: BAA14790.1
AF062842 Genomic DNA Translation: AAC16348.1
PIRiS07795
RefSeqiNP_415774.1, NC_000913.3
WP_001056490.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC74340; AAC74340; b1258
BAA14790; BAA14790; BAA14790
GeneIDi947133
KEGGiecj:JW1250
eco:b1258
PATRICifig|1411691.4.peg.1025

Similar proteinsi

Entry informationi

Entry nameiYCIF_ECOLI
AccessioniPrimary (citable) accession number: P21362
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 1, 1991
Last sequence update: May 1, 1991
Last modified: March 28, 2018
This is version 130 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome
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Main funding by: National Institutes of Health