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P21362 (YCIF_ECOLI) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 112. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Protein YciF
Gene names
Name:yciF
Ordered Locus Names:b1258, JW1250
OrganismEscherichia coli (strain K12) [Reference proteome] [HAMAP]
Taxonomic identifier83333 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia

Protein attributes

Sequence length166 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Subunit structure

Homodimer. Ref.8

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 166166Protein YciF
PRO_0000168874

Secondary structure

........... 166
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P21362 [UniParc].

Last modified May 1, 1991. Version 1.
Checksum: 86A4B76DD8FC5EB2

FASTA16618,597
        10         20         30         40         50         60 
MNMKTIEDVF IHLLSDTYSA EKQLTRALAK LARATSNEKL SQAFHAHLEE THGQIERIDQ 

        70         80         90        100        110        120 
VVESESNLKI KRMKCVAMEG LIEEANEVIE STEKNEVRDA ALIAAAQKVE HYEIASYGTL 

       130        140        150        160 
ATLAEQLGYR KAAKLLKETL EEEKATDIKL TDLAINNVNK KAENKA 

« Hide

References

« Hide 'large scale' references
[1]"Molecular evolution of the Escherichia coli chromosome. I. Analysis of structure and natural variation in a previously uncharacterized region between trp and tonB."
Stoltzfus A., Leslie J.F., Milkman R.
Genetics 120:345-358(1988) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: K12.
[2]Milkman R.
Submitted (MAR-1995) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: K12 and Various ECOR strains.
[3]"A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 28.0-40.1 min region on the linkage map."
Aiba H., Baba T., Fujita K., Hayashi K., Inada T., Isono K., Itoh T., Kasai H., Kashimoto K., Kimura S., Kitakawa M., Kitagawa M., Makino K., Miki T., Mizobuchi K., Mori H., Mori T., Motomura K. expand/collapse author list , Nakade S., Nakamura Y., Nashimoto H., Nishio Y., Oshima T., Saito N., Sampei G., Seki Y., Sivasundaram S., Tagami H., Takeda J., Takemoto K., Takeuchi Y., Wada C., Yamamoto Y., Horiuchi T.
DNA Res. 3:363-377(1996) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
[4]"The complete genome sequence of Escherichia coli K-12."
Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y.
Science 277:1453-1462(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / MG1655 / ATCC 47076.
[5]"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
[6]"Function of the Escherichia coli nucleoid protein, H-NS: molecular analysis of a subset of proteins whose expression is enhanced in a hns deletion mutant."
Yoshida T., Ueguchi C., Yamada H., Mizuno T.
Mol. Gen. Genet. 237:113-122(1993) [PubMed] [Europe PMC] [Abstract]
Cited for: PROTEIN SEQUENCE OF 1-20.
Strain: K12.
[7]Pinou T., Riley M.A.
Submitted (MAY-1998) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 61-148.
Strain: 976-L14.
[8]"The crystal structure of the E. coli stress protein yciF."
Hindupur A., Liu D., Zhao Y., Bellamy H.D., White M.A., Fox R.O.
Protein Sci. 15:2605-2611(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.0 ANGSTROMS), SUBUNIT.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
X13583 Genomic DNA. Translation: CAA31920.1.
U25417 Genomic DNA. Translation: AAA73793.1.
U25419 Genomic DNA. Translation: AAA73805.1.
U25420 Genomic DNA. Translation: AAA73811.1.
U25421 Genomic DNA. Translation: AAA73817.1.
U25423 Genomic DNA. Translation: AAA73829.1.
U25427 Genomic DNA. Translation: AAA73847.1.
U23489 Genomic DNA. Translation: AAB60037.1.
U23490 Genomic DNA. Translation: AAA65142.1.
U23491 Genomic DNA. Translation: AAA65148.1.
U23492 Genomic DNA. Translation: AAA65154.1.
U00096 Genomic DNA. Translation: AAC74340.1.
AP009048 Genomic DNA. Translation: BAA14790.1.
AF062842 Genomic DNA. Translation: AAC16348.1.
PIRS07795.
RefSeqNP_415774.1. NC_000913.3.
YP_489526.1. NC_007779.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
2GS4X-ray2.00A/B1-166[»]
ProteinModelPortalP21362.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

DIPDIP-11580N.
IntActP21362. 6 interactions.
STRING511145.b1258.

Proteomic databases

PaxDbP21362.
PRIDEP21362.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAC74340; AAC74340; b1258.
BAA14790; BAA14790; BAA14790.
GeneID12931660.
947133.
KEGGecj:Y75_p1232.
eco:b1258.
PATRIC32117776. VBIEscCol129921_1308.

Organism-specific databases

EchoBASEEB1116.
EcoGeneEG11126. yciF.

Phylogenomic databases

eggNOGCOG3685.
HOGENOMHOG000025592.
OMAERINTEG.
OrthoDBEOG6MSS3K.
PhylomeDBP21362.

Enzyme and pathway databases

BioCycEcoCyc:EG11126-MONOMER.
ECOL316407:JW1250-MONOMER.
RETL1328306-WGS:GSTH-271-MONOMER.
RETL1328306-WGS:GSTH-4294-MONOMER.

Gene expression databases

GenevestigatorP21362.

Family and domain databases

Gene3D1.20.1260.10. 1 hit.
InterProIPR010287. DUF892.
IPR009078. Ferritin-like_SF.
IPR012347. Ferritin-rel.
[Graphical view]
PfamPF05974. DUF892. 1 hit.
[Graphical view]
SUPFAMSSF47240. SSF47240. 1 hit.
ProtoNetSearch...

Other

EvolutionaryTraceP21362.
PROP21362.

Entry information

Entry nameYCIF_ECOLI
AccessionPrimary (citable) accession number: P21362
Entry history
Integrated into UniProtKB/Swiss-Prot: May 1, 1991
Last sequence update: May 1, 1991
Last modified: July 9, 2014
This is version 112 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

Escherichia coli

Escherichia coli (strain K12): entries and cross-references to EcoGene