Protein YciF - Escherichia coli (strain K12)

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P21362 (YCIF_ECOLI) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 103. History...

Clusters with 100%, 90%, 50% identity |

Documents (2) |

Third-party data

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents Customize order

Names and origin

Protein names

Recommended name:
Protein YciF

Gene names

Name:	yciF
Ordered Locus Names:	b1258, JW1250

Organism

Escherichia coli (strain K12) [Reference proteome] [HAMAP]

Taxonomic identifier

83333 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Escherichia ›

Protein attributes

Sequence length	166 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Subunit structure

Homodimer. Ref.8

Ontologies

Keywords
Technical term	3D-structure Complete proteome Direct protein sequencing Reference proteome
Gene Ontology (GO)
Biological_process	response to DNA damage stimulus Inferred from expression pattern PubMed 11967071. Source: EcoliWiki
Molecular_function	oxidoreductase activity Inferred from electronic annotation. Source: InterPro transition metal ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

1 – 166

166

Protein YciF

PRO_0000168874

Secondary structure

166

Helix Strand Turn

Details...

Sequences

Sequence

Length

Mass (Da)

Tools

P21362 [UniParc].

Last modified May 1, 1991. Version 1.
Checksum: 86A4B76DD8FC5EB2
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FASTA

166

18,597

        10         20         30         40         50         60 
MNMKTIEDVF IHLLSDTYSA EKQLTRALAK LARATSNEKL SQAFHAHLEE THGQIERIDQ 

        70         80         90        100        110        120 
VVESESNLKI KRMKCVAMEG LIEEANEVIE STEKNEVRDA ALIAAAQKVE HYEIASYGTL 

       130        140        150        160 
ATLAEQLGYR KAAKLLKETL EEEKATDIKL TDLAINNVNK KAENKA

« Hide

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Molecular evolution of the Escherichia coli chromosome. I. Analysis of structure and natural variation in a previously uncharacterized region between trp and tonB." Stoltzfus A., Leslie J.F., Milkman R. Genetics 120:345-358(1988) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. Strain: K12.
[2]	Milkman R. Submitted (MAR-1995) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. Strain: K12 and Various ECOR strains.
[3]	"A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 28.0-40.1 min region on the linkage map." Aiba H., Baba T., Fujita K., Hayashi K., Inada T., Isono K., Itoh T., Kasai H., Kashimoto K., Kimura S., Kitakawa M., Kitagawa M., Makino K., Miki T., Mizobuchi K., Mori H., Mori T., Motomura K. Horiuchi T. DNA Res. 3:363-377(1996) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
[4]	"The complete genome sequence of Escherichia coli K-12." Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y. Science 277:1453-1474(1997) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / MG1655 / ATCC 47076.
[5]	"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110." Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T. Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
[6]	"Function of the Escherichia coli nucleoid protein, H-NS: molecular analysis of a subset of proteins whose expression is enhanced in a hns deletion mutant." Yoshida T., Ueguchi C., Yamada H., Mizuno T. Mol. Gen. Genet. 237:113-122(1993) [PubMed] [Europe PMC] [Abstract] Cited for: PROTEIN SEQUENCE OF 1-20. Strain: K12.
[7]	Pinou T., Riley M.A. Submitted (MAY-1998) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 61-148. Strain: 976-L14.
[8]	"The crystal structure of the E. coli stress protein yciF." Hindupur A., Liu D., Zhao Y., Bellamy H.D., White M.A., Fox R.O. Protein Sci. 15:2605-2611(2006) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (2.0 ANGSTROMS), SUBUNIT.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

X13583 Genomic DNA. Translation: CAA31920.1.
U25417 Genomic DNA. Translation: AAA73793.1.
U25419 Genomic DNA. Translation: AAA73805.1.
U25420 Genomic DNA. Translation: AAA73811.1.
U25421 Genomic DNA. Translation: AAA73817.1.
U25423 Genomic DNA. Translation: AAA73829.1.
U25427 Genomic DNA. Translation: AAA73847.1.
U23489 Genomic DNA. Translation: AAB60037.1.
U23490 Genomic DNA. Translation: AAA65142.1.
U23491 Genomic DNA. Translation: AAA65148.1.
U23492 Genomic DNA. Translation: AAA65154.1.
U00096 Genomic DNA. Translation: AAC74340.1.
AP009048 Genomic DNA. Translation: BAA14790.1.
AF062842 Genomic DNA. Translation: AAC16348.1.

PIR

S07795.

RefSeq

NP_415774.1. NC_000913.2.
YP_489526.1. NC_007779.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
2GS4	X-ray	2.00	A/B	1-166	[»]

ProteinModelPortal

P21362.

SMR

P21362. Positions 3-161.

ModBase

Search...

Protein-protein interaction databases

DIP

DIP-11580N.

IntAct

P21362. 5 interactions.

STRING

511145.b1258.

Proteomic databases

PaxDb

P21362.

PRIDE

P21362.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

EnsemblBacteria

AAC74340; AAC74340; b1258.
BAA14790; BAA14790; BAA14790.

GeneID

12931660.
947133.

KEGG

ecj:Y75_p1232.
eco:b1258.

PATRIC

32117776. VBIEscCol129921_1308.

Organism-specific databases

EchoBASE

EB1116.

EcoGene

EG11126. yciF.

Phylogenomic databases

eggNOG

COG3685.

HOGENOM

HOG000025592.

OMA

KDVYYAE.

ProtClustDB

CLSK879985.

Enzyme and pathway databases

BioCyc

EcoCyc:EG11126-MONOMER.
ECOL316407:JW1250-MONOMER.

Gene expression databases

Genevestigator

P21362.

Family and domain databases

Gene3D

1.20.1260.10. 1 hit.

InterPro

IPR010287. DUF892.
IPR009078. Ferritin-like_SF.
IPR012347. Ferritin-rel.
[Graphical view]

Pfam

PF05974. DUF892. 1 hit.
[Graphical view]

SUPFAM

SSF47240. Ferritin/RR_like. 1 hit.

ProtoNet

Search...

Other

EvolutionaryTrace

P21362.

Entry information

Entry name

YCIF_ECOLI

Accession

Primary (citable) accession number: P21362

Entry history

Integrated into UniProtKB/Swiss-Prot:	May 1, 1991
Last sequence update:	May 1, 1991
Last modified:	May 1, 2013
This is version 103 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program

Relevant documents

Escherichia coli

Escherichia coli (strain K12): entries and cross-references to EcoGene

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents

Preferred order of sections

Names and origin

Protein attributes

General annotation (Comments)

Ontologies

Sequence annotation (Features)

Molecule processing

Secondary structure

Sequences

References

Cross-references

Sequence databases

3D structure databases

Protein-protein interaction databases

Proteomic databases

Protocols and materials databases

Genome annotation databases

Organism-specific databases

Phylogenomic databases

Enzyme and pathway databases

Gene expression databases

Family and domain databases

Other

Entry information

Relevant documents