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Protein

Protein YciF

Gene

yciF

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

  • cellular response to DNA damage stimulus Source: EcoliWiki
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:EG11126-MONOMER.
ECOL316407:JW1250-MONOMER.
RETL1328306-WGS:GSTH-271-MONOMER.
RETL1328306-WGS:GSTH-4294-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein YciF
Gene namesi
Name:yciF
Ordered Locus Names:b1258, JW1250
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
ProteomesiUP000000318 Componenti: Chromosome UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11126. yciF.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 166166Protein YciFPRO_0000168874Add
BLAST

Proteomic databases

PaxDbiP21362.
PRIDEiP21362.

Interactioni

Subunit structurei

Homodimer.1 Publication

Protein-protein interaction databases

DIPiDIP-11580N.
IntActiP21362. 6 interactions.
STRINGi511145.b1258.

Structurei

Secondary structure

1
166
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi6 – 3328Combined sources
Helixi38 – 6326Combined sources
Helixi76 – 8914Combined sources
Helixi95 – 12632Combined sources
Helixi130 – 15930Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2GS4X-ray2.00A/B1-166[»]
ProteinModelPortaliP21362.
SMRiP21362. Positions 3-161.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP21362.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3685.
HOGENOMiHOG000025592.
InParanoidiP21362.
OMAiARAKTCE.
OrthoDBiEOG6MSS3K.
PhylomeDBiP21362.

Family and domain databases

Gene3Di1.20.1260.10. 1 hit.
InterProiIPR010287. DUF892.
IPR009078. Ferritin-like_SF.
IPR012347. Ferritin-rel.
[Graphical view]
PfamiPF05974. DUF892. 1 hit.
[Graphical view]
SUPFAMiSSF47240. SSF47240. 1 hit.

Sequencei

Sequence statusi: Complete.

P21362-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNMKTIEDVF IHLLSDTYSA EKQLTRALAK LARATSNEKL SQAFHAHLEE
60 70 80 90 100
THGQIERIDQ VVESESNLKI KRMKCVAMEG LIEEANEVIE STEKNEVRDA
110 120 130 140 150
ALIAAAQKVE HYEIASYGTL ATLAEQLGYR KAAKLLKETL EEEKATDIKL
160
TDLAINNVNK KAENKA
Length:166
Mass (Da):18,597
Last modified:May 1, 1991 - v1
Checksum:i86A4B76DD8FC5EB2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X13583 Genomic DNA. Translation: CAA31920.1.
U25417 Genomic DNA. Translation: AAA73793.1.
U25419 Genomic DNA. Translation: AAA73805.1.
U25420 Genomic DNA. Translation: AAA73811.1.
U25421 Genomic DNA. Translation: AAA73817.1.
U25423 Genomic DNA. Translation: AAA73829.1.
U25427 Genomic DNA. Translation: AAA73847.1.
U23489 Genomic DNA. Translation: AAB60037.1.
U23490 Genomic DNA. Translation: AAA65142.1.
U23491 Genomic DNA. Translation: AAA65148.1.
U23492 Genomic DNA. Translation: AAA65154.1.
U00096 Genomic DNA. Translation: AAC74340.1.
AP009048 Genomic DNA. Translation: BAA14790.1.
AF062842 Genomic DNA. Translation: AAC16348.1.
PIRiS07795.
RefSeqiNP_415774.1. NC_000913.3.
WP_001056490.1. NZ_CP010445.1.

Genome annotation databases

EnsemblBacteriaiAAC74340; AAC74340; b1258.
BAA14790; BAA14790; BAA14790.
GeneIDi947133.
KEGGieco:b1258.
PATRICi32117776. VBIEscCol129921_1308.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X13583 Genomic DNA. Translation: CAA31920.1.
U25417 Genomic DNA. Translation: AAA73793.1.
U25419 Genomic DNA. Translation: AAA73805.1.
U25420 Genomic DNA. Translation: AAA73811.1.
U25421 Genomic DNA. Translation: AAA73817.1.
U25423 Genomic DNA. Translation: AAA73829.1.
U25427 Genomic DNA. Translation: AAA73847.1.
U23489 Genomic DNA. Translation: AAB60037.1.
U23490 Genomic DNA. Translation: AAA65142.1.
U23491 Genomic DNA. Translation: AAA65148.1.
U23492 Genomic DNA. Translation: AAA65154.1.
U00096 Genomic DNA. Translation: AAC74340.1.
AP009048 Genomic DNA. Translation: BAA14790.1.
AF062842 Genomic DNA. Translation: AAC16348.1.
PIRiS07795.
RefSeqiNP_415774.1. NC_000913.3.
WP_001056490.1. NZ_CP010445.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2GS4X-ray2.00A/B1-166[»]
ProteinModelPortaliP21362.
SMRiP21362. Positions 3-161.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-11580N.
IntActiP21362. 6 interactions.
STRINGi511145.b1258.

Proteomic databases

PaxDbiP21362.
PRIDEiP21362.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74340; AAC74340; b1258.
BAA14790; BAA14790; BAA14790.
GeneIDi947133.
KEGGieco:b1258.
PATRICi32117776. VBIEscCol129921_1308.

Organism-specific databases

EchoBASEiEB1116.
EcoGeneiEG11126. yciF.

Phylogenomic databases

eggNOGiCOG3685.
HOGENOMiHOG000025592.
InParanoidiP21362.
OMAiARAKTCE.
OrthoDBiEOG6MSS3K.
PhylomeDBiP21362.

Enzyme and pathway databases

BioCyciEcoCyc:EG11126-MONOMER.
ECOL316407:JW1250-MONOMER.
RETL1328306-WGS:GSTH-271-MONOMER.
RETL1328306-WGS:GSTH-4294-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP21362.
PROiP21362.

Family and domain databases

Gene3Di1.20.1260.10. 1 hit.
InterProiIPR010287. DUF892.
IPR009078. Ferritin-like_SF.
IPR012347. Ferritin-rel.
[Graphical view]
PfamiPF05974. DUF892. 1 hit.
[Graphical view]
SUPFAMiSSF47240. SSF47240. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Molecular evolution of the Escherichia coli chromosome. I. Analysis of structure and natural variation in a previously uncharacterized region between trp and tonB."
    Stoltzfus A., Leslie J.F., Milkman R.
    Genetics 120:345-358(1988) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: K12.
  2. Milkman R.
    Submitted (MAR-1995) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: K12 and Various ECOR strains.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  5. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  6. "Function of the Escherichia coli nucleoid protein, H-NS: molecular analysis of a subset of proteins whose expression is enhanced in a hns deletion mutant."
    Yoshida T., Ueguchi C., Yamada H., Mizuno T.
    Mol. Gen. Genet. 237:113-122(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 1-20.
    Strain: K12.
  7. Pinou T., Riley M.A.
    Submitted (MAY-1998) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 61-148.
    Strain: 976-L14.
  8. "The crystal structure of the E. coli stress protein yciF."
    Hindupur A., Liu D., Zhao Y., Bellamy H.D., White M.A., Fox R.O.
    Protein Sci. 15:2605-2611(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.0 ANGSTROMS), SUBUNIT.

Entry informationi

Entry nameiYCIF_ECOLI
AccessioniPrimary (citable) accession number: P21362
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 1, 1991
Last sequence update: May 1, 1991
Last modified: July 22, 2015
This is version 119 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.