P20823 (HNF1A_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 167.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Hepatocyte nuclear factor 1-alpha Short name=HNF-1-alpha Short name=HNF-1A Alternative name(s): Liver-specific transcription factor LF-B1 Short name=LFB1 Transcription factor 1 Short name=TCF-1 | ||||
| Gene names |
| ||||
| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 631 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Transcriptional activator that regulates the tissue specific expression of multiple genes, especially in pancreatic islet cells and in liver. Required for the expression of several liver specific genes. Binds to the inverted palindrome 5'-GTTAATNATTAAC-3'. Ref.8 Ref.32 |
| Subunit structure | Binds DNA as a dimer. Interacts with PCBD1. Heterotetramer with PCBD1; formed by a dimer of dimers. Ref.32 |
| Subcellular location | |
| Tissue specificity | Liver. |
| Polymorphism | The Ala-98/Val-98 polymorphism is associated with a reduction in glucose-induced serum C-peptide and insulin responses. |
| Involvement in disease | Hepatic adenomas familial (HEPAF) [MIM:142330]: Rare benign liver tumors of presumable epithelial origin that develop in an otherwise normal liver. Hepatic adenomas may be single or multiple. They consist of sheets of well-differentiated hepatocytes that contain fat and glycogen and can produce bile. Bile ducts or portal areas are absent. Kupffer cells, if present, are reduced in number and are non-functional. Conditions associated with adenomas are insulin-dependent diabetes mellitus and glycogen storage diseases (types 1 and 3). Maturity-onset diabetes of the young 3 (MODY3) [MIM:600496]: A form of diabetes that is characterized by an autosomal dominant mode of inheritance, onset in childhood or early adulthood (usually before 25 years of age), a primary defect in insulin secretion and frequent insulin-independence at the beginning of the disease. Diabetes mellitus, insulin-dependent, 20 (IDDM20) [MIM:612520]: A multifactorial disorder of glucose homeostasis that is characterized by susceptibility to ketoacidosis in the absence of insulin therapy. Clinical fetaures are polydipsia, polyphagia and polyuria which result from hyperglycemia-induced osmotic diuresis and secondary thirst. These derangements result in long-term complications that affect the eyes, kidneys, nerves, and blood vessels. |
| Sequence similarities | Belongs to the HNF1 homeobox family. Contains 1 homeobox DNA-binding domain. |
Ontologies
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| DYRK1B | Q9Y463 | 4 | EBI-636034,EBI-634187 |
Alternative products
| This entry describes 3 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform A (identifier: P20823-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform B (identifier: P20823-2) The sequence of this isoform differs from the canonical sequence as follows: 501-542: ALYSHKPEVA...LASLTPTKQV → GEHPVPHTAG...ACVSGTSVFP 543-601: Missing. | ||||||
| Isoform C (identifier: P20823-3) The sequence of this isoform differs from the canonical sequence as follows: 438-494: LASTQAQSVP...TQSPFMATMA → KLVGMGGHLG...SHCATSVIPG 495-601: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | |||||||||||||||||||||||||||||
Molecule processing | ||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 631 | 631 | Hepatocyte nuclear factor 1-alpha | PRO_0000049115 | ||||||||||||||||||||||||||||||
Regions | ||||||||||||||||||||||||||||||||||
| DNA binding | 199 – 279 | 81 | Homeobox; HNF1-type Ref.8 | |||||||||||||||||||||||||||||||
| Region | 1 – 31 | 31 | Dimerization | |||||||||||||||||||||||||||||||
| Region | 130 – 132 | 3 | Interaction with DNA | |||||||||||||||||||||||||||||||
| Region | 143 – 149 | 7 | Interaction with DNA | |||||||||||||||||||||||||||||||
| Region | 155 – 158 | 4 | Interaction with DNA | |||||||||||||||||||||||||||||||
| Region | 203 – 206 | 4 | Interaction with DNA | |||||||||||||||||||||||||||||||
| Region | 263 – 265 | 3 | Interaction with DNA | |||||||||||||||||||||||||||||||
| Region | 270 – 273 | 4 | Interaction with DNA | |||||||||||||||||||||||||||||||
| Motif | 197 – 205 | 9 | Nuclear localization signal Probable | |||||||||||||||||||||||||||||||
| Compositional bias | 71 – 80 | 10 | Asp/Glu-rich (acidic; potential involvement with transcription) | |||||||||||||||||||||||||||||||
Amino acid modifications | ||||||||||||||||||||||||||||||||||
| Modified residue | 74 | 1 | Phosphothreonine By similarity | |||||||||||||||||||||||||||||||
| Modified residue | 247 | 1 | Phosphoserine By similarity | |||||||||||||||||||||||||||||||
Natural variations | ||||||||||||||||||||||||||||||||||
| Alternative sequence | 438 – 494 | 57 | LASTQ…MATMA → KLVGMGGHLGGRLMGQPQNP GAGRATGTHSFIHSFIQHVF IQCLLWTSHCATSVIPG in isoform C. | VSP_002252 | ||||||||||||||||||||||||||||||
| Alternative sequence | 495 – 601 | 107 | Missing in isoform C. | VSP_002253 | ||||||||||||||||||||||||||||||
| Alternative sequence | 501 – 542 | 42 | ALYSH…PTKQV → GEHPVPHTAGDDDRGWLSMD AGERGAWQALQSACVSGTSV FP in isoform B. | VSP_002250 | ||||||||||||||||||||||||||||||
| Alternative sequence | 543 – 601 | 59 | Missing in isoform B. | VSP_002251 | ||||||||||||||||||||||||||||||
| Natural variant | 12 | 1 | L → H in MODY3; abolishes interaction with PCBD1 and DNA. Ref.11 Ref.26 Ref.32 | VAR_010537 | ||||||||||||||||||||||||||||||
| Natural variant | 20 | 1 | G → R in MODY3; abolishes interaction with PCBD1 and DNA. Ref.29 Ref.32 | VAR_012483 | ||||||||||||||||||||||||||||||
| Natural variant | 27 | 1 | I → L. Ref.4 Ref.7 Ref.12 Ref.18 Ref.19 Ref.21 Ref.25 Corresponds to variant rs1169288 [ dbSNP | Ensembl ]. | VAR_007905 | ||||||||||||||||||||||||||||||
| Natural variant | 31 | 1 | G → D in MODY3; no effect on interaction with PCBD1 and DNA. Ref.22 Ref.32 | VAR_010538 | ||||||||||||||||||||||||||||||
| Natural variant | 48 | 1 | E → K in IDDM20. Ref.23 | VAR_010539 | ||||||||||||||||||||||||||||||
| Natural variant | 98 | 1 | A → V. Ref.4 Ref.18 Ref.19 Corresponds to variant rs1800574 [ dbSNP | Ensembl ]. | VAR_010540 | ||||||||||||||||||||||||||||||
| Natural variant | 107 | 1 | L → R in MODY3. Ref.10 | VAR_010541 | ||||||||||||||||||||||||||||||
| Natural variant | 117 | 1 | K → E in MODY3. Ref.27 | VAR_010542 | ||||||||||||||||||||||||||||||
| Natural variant | 122 | 1 | Y → C in MODY3. Ref.20 | VAR_003756 | ||||||||||||||||||||||||||||||
| Natural variant | 127 | 1 | N → Y in a hepatocellular carcinoma sample; somatic mutation. Ref.33 | VAR_033088 | ||||||||||||||||||||||||||||||
| Natural variant | 128 | 1 | I → N in MODY3. Ref.17 | VAR_010543 | ||||||||||||||||||||||||||||||
| Natural variant | 129 | 1 | P → T in MODY3. Ref.16 | VAR_010544 | ||||||||||||||||||||||||||||||
| Natural variant | 131 | 1 | R → Q in MODY3; expected to interfere with DNA binding. Ref.11 Ref.15 | VAR_010545 | ||||||||||||||||||||||||||||||
| Natural variant | 131 | 1 | R → W in MODY3; expected to interfere with DNA binding. Ref.10 Ref.16 | VAR_010546 | ||||||||||||||||||||||||||||||
| Natural variant | 133 | 1 | V → M in MODY3. | VAR_010547 | ||||||||||||||||||||||||||||||
| Natural variant | 142 | 1 | S → F in MODY3; reduces transcription activation by about 80%. Ref.8 Ref.20 | VAR_003757 | ||||||||||||||||||||||||||||||
| Natural variant | 143 | 1 | H → Y in MODY3; expected to interfere with DNA binding. Ref.17 Ref.27 | VAR_010548 | ||||||||||||||||||||||||||||||
| Natural variant | 158 | 1 | K → N in MODY3; expected to interfere with DNA binding. Ref.26 | VAR_010549 | ||||||||||||||||||||||||||||||
| Natural variant | 159 | 1 | R → Q in MODY3. Ref.20 Ref.26 | VAR_003758 | ||||||||||||||||||||||||||||||
| Natural variant | 159 | 1 | R → W in MODY3. Ref.16 Ref.22 | VAR_010550 | ||||||||||||||||||||||||||||||
| Natural variant | 161 | 1 | A → T in MODY3. Ref.22 | VAR_010551 | ||||||||||||||||||||||||||||||
| Natural variant | 165 | 1 | W → C in a hepatocellular carcinoma sample; somatic mutation. Ref.33 | VAR_033089 | ||||||||||||||||||||||||||||||
| Natural variant | 191 | 1 | G → D in late-onset NIDDM. Ref.11 | VAR_010552 | ||||||||||||||||||||||||||||||
| Natural variant | 200 | 1 | R → W in MODY3; expected to interfere with nuclear localization. Ref.22 | VAR_063069 | ||||||||||||||||||||||||||||||
| Natural variant | 203 | 1 | R → C in MODY3; expected to interfere with nuclear localization and DNA binding. Ref.26 | VAR_010554 | ||||||||||||||||||||||||||||||
| Natural variant | 203 | 1 | R → H in MODY3; expected to interfere with nuclear localization and DNA binding. Ref.29 | VAR_012484 | ||||||||||||||||||||||||||||||
| Natural variant | 205 | 1 | K → Q in MODY3; reduces transcription activation by about 50%. Ref.8 Ref.11 | VAR_010555 | ||||||||||||||||||||||||||||||
| Natural variant | 206 | 1 | W → C in a hepatic adenoma sample; somatic mutation; expected to interfere with DNA binding. Ref.33 | VAR_033090 | ||||||||||||||||||||||||||||||
| Natural variant | 206 | 1 | W → L in a hepatic adenoma sample; somatic mutation; expected to interfere with DNA binding. Ref.33 | VAR_033091 | ||||||||||||||||||||||||||||||
| Natural variant | 229 | 1 | R → Q in MODY3. Ref.15 | VAR_010556 | ||||||||||||||||||||||||||||||
| Natural variant | 237 | 1 | N → S in a hepatic multiple adenoma sample; somatic mutation. Ref.33 | VAR_033092 | ||||||||||||||||||||||||||||||
| Natural variant | 241 | 1 | C → G in IDDM20 and MODY3. Ref.15 Ref.23 | VAR_010557 | ||||||||||||||||||||||||||||||
| Natural variant | 244 | 1 | R → G in a hepatic adenoma sample; somatic mutation; expected to interfere with DNA binding. Ref.33 | VAR_033093 | ||||||||||||||||||||||||||||||
| Natural variant | 250 | 1 | Q → P in a hepatocellular carcinoma sample; somatic mutation. Ref.33 | VAR_033094 | ||||||||||||||||||||||||||||||
| Natural variant | 254 | 1 | L → M in late-onset NIDDM; low penetrance; could be a rare polymorphism. Ref.12 | VAR_010558 | ||||||||||||||||||||||||||||||
| Natural variant | 259 | 1 | V → D in MODY3. | VAR_010559 | ||||||||||||||||||||||||||||||
| Natural variant | 260 | 1 | T → M in MODY3. Ref.10 | VAR_010560 | ||||||||||||||||||||||||||||||
| Natural variant | 263 | 1 | R → C in MODY3; expected to interfere with DNA binding. Ref.11 | VAR_010561 | ||||||||||||||||||||||||||||||
| Natural variant | 268 | 1 | F → C in a hepatic adenoma sample; somatic mutation. Ref.33 | VAR_033095 | ||||||||||||||||||||||||||||||
| Natural variant | 271 | 1 | R → W in MODY3. Ref.22 | VAR_010562 | ||||||||||||||||||||||||||||||
| Natural variant | 272 | 1 | R → C in NIDDM. Ref.28 | VAR_010563 | ||||||||||||||||||||||||||||||
| Natural variant | 272 | 1 | R → H in IDDM20 and MODY3. Ref.10 Ref.13 Ref.15 | VAR_003759 | ||||||||||||||||||||||||||||||
| Natural variant | 273 | 1 | K → E in a hepatic adenoma sample; somatic mutation. Ref.33 Ref.34 | VAR_033096 | ||||||||||||||||||||||||||||||
| Natural variant | 319 | 1 | G → S Strong association with NIDDM susceptibility; unique to the Canadian Oji-Cree population. Ref.31 | VAR_010564 | ||||||||||||||||||||||||||||||
| Natural variant | 415 | 1 | G → R in IDDM20; loss of function. Ref.28 | VAR_010565 | ||||||||||||||||||||||||||||||
| Natural variant | 432 | 1 | S → C in MODY3. Ref.29 | VAR_012485 | ||||||||||||||||||||||||||||||
| Natural variant | 447 | 1 | P → L in MODY3. Ref.3 Ref.17 | VAR_003760 | ||||||||||||||||||||||||||||||
| Natural variant | 487 | 1 | S → N. Ref.4 Ref.12 Ref.18 Ref.19 Ref.21 Ref.25 Corresponds to variant rs2464196 [ dbSNP | Ensembl ]. | VAR_007906 | ||||||||||||||||||||||||||||||
| Natural variant | 514 | 1 | H → R. Ref.21 | VAR_010566 | ||||||||||||||||||||||||||||||
| Natural variant | 519 | 1 | P → L in MODY3. Ref.16 | VAR_010567 | ||||||||||||||||||||||||||||||
| Natural variant | 537 | 1 | T → R in MODY3; incomplete penetrance. Ref.24 | VAR_010568 | ||||||||||||||||||||||||||||||
| Natural variant | 574 | 1 | G → S in a black African with an atypical form of diabetes; also in an individual with hepatic adenoma and familial early-onset diabetes. Ref.4 Ref.14 Ref.33 Corresponds to variant rs1169305 [ dbSNP | Ensembl ]. | VAR_010569 | ||||||||||||||||||||||||||||||
| Natural variant | 583 | 1 | R → G in IDDM20. Ref.13 | VAR_003761 | ||||||||||||||||||||||||||||||
| Natural variant | 583 | 1 | R → Q in late-onset NIDDM; also in an individual with hepatic hyperplasia and familial early-onset diabetes. Ref.19 Ref.33 | VAR_010570 | ||||||||||||||||||||||||||||||
| Natural variant | 594 | 1 | S → I in MODY3. | VAR_010571 | ||||||||||||||||||||||||||||||
| Natural variant | 618 | 1 | I → M in MODY3. Ref.29 | VAR_012486 | ||||||||||||||||||||||||||||||
| Natural variant | 619 | 1 | E → K in MODY3. Ref.24 | VAR_010572 | ||||||||||||||||||||||||||||||
| Natural variant | 620 | 1 | T → I in MODY3; incomplete penetrance. Ref.16 Ref.30 | VAR_010573 | ||||||||||||||||||||||||||||||
Experimental info | ||||||||||||||||||||||||||||||||||
| Mutagenesis | 127 | 1 | N → W: Abolishes transcription activation. Ref.8 | |||||||||||||||||||||||||||||||
| Mutagenesis | 132 | 1 | E → K: Abolishes transcription activation. Ref.8 | |||||||||||||||||||||||||||||||
| Mutagenesis | 177 | 1 | F → S: No significant effect on transcription activation. Ref.8 | |||||||||||||||||||||||||||||||
| Mutagenesis | 186 | 1 | I → Q: No effect on transcription activation. Ref.8 | |||||||||||||||||||||||||||||||
| Mutagenesis | 190 | 1 | T → Q: No effect on transcription activation. Ref.8 | |||||||||||||||||||||||||||||||
| Mutagenesis | 202 | 1 | N → D: Reduces transcription activation by 70%. Ref.8 | |||||||||||||||||||||||||||||||
| Mutagenesis | 246 | 1 | V → D: Reduces transcription activation by 75%. Ref.8 | |||||||||||||||||||||||||||||||
| Mutagenesis | 257 | 1 | N → W: Reduces transcription activation by 70%. Ref.8 | |||||||||||||||||||||||||||||||
Secondary structure | ||||||||||||||||||||||||||||||||||
Helix Strand Turn | ||||||||||||||||||||||||||||||||||
| Helix | 4 – 19 | 16 | ||||||||||||||||||||||||||||||||
| Helix | 23 – 30 | 8 | ||||||||||||||||||||||||||||||||
| Helix | 94 – 107 | 14 | ||||||||||||||||||||||||||||||||
| Helix | 112 – 125 | 14 | ||||||||||||||||||||||||||||||||
| Helix | 130 – 137 | 8 | ||||||||||||||||||||||||||||||||
| Helix | 141 – 149 | 9 | ||||||||||||||||||||||||||||||||
| Helix | 156 – 169 | 14 | ||||||||||||||||||||||||||||||||
| Turn | 170 – 173 | 4 | ||||||||||||||||||||||||||||||||
| Helix | 174 – 177 | 4 | ||||||||||||||||||||||||||||||||
| Helix | 208 – 221 | 14 | ||||||||||||||||||||||||||||||||
| Turn | 226 – 229 | 4 | ||||||||||||||||||||||||||||||||
| Helix | 230 – 243 | 14 | ||||||||||||||||||||||||||||||||
| Helix | 255 – 257 | 3 | ||||||||||||||||||||||||||||||||
| Helix | 261 – 274 | 14 | ||||||||||||||||||||||||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Cloning of human hepatic nuclear factor 1 (HNF1) and chromosomal localization of its gene in man and mouse." Bach I., Galcheva-Gargova Z., Mattei M.-G., Simon-Chazottes D., Guenet J.-L., Cereghini S., Yaniv M. Genomics 8:155-164(1990) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA]. Tissue: Liver. |
| [2] | "More potent transcriptional activators or a transdominant inhibitor of the HNF1 homeoprotein family are generated by alternative RNA processing." Bach I., Yaniv M. EMBO J. 12:4229-4242(1993) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA]. Tissue: Liver. |
| [3] | "Mutations in the hepatocyte nuclear factor-1alpha gene in maturity-onset diabetes of the young (MODY3)." Yamagata K., Oda N., Kaisaki P.J., Menzel S., Furuta H., Vaxillaire M., Southam L., Cox R.D., Lathrop G.M., Boriraj V.V., Chen X., Cox N.J., Oda Y., Yano H., le Beau M.M., Yamada S., Nishigori H., Takeda J. Bell G.I.Nature 384:455-458(1996) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], VARIANT MODY3 LEU-447. |
| [4] | SeattleSNPs variation discovery resource Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], VARIANTS LEU-27; VAL-98; ASN-487 AND SER-574. |
| [5] | "The finished DNA sequence of human chromosome 12." Scherer S.E., Muzny D.M., Buhay C.J., Chen R., Cree A., Ding Y., Dugan-Rocha S., Gill R., Gunaratne P., Harris R.A., Hawes A.C., Hernandez J., Hodgson A.V., Hume J., Jackson A., Khan Z.M., Kovar-Smith C., Lewis L.R. Gibbs R.A.Nature 440:346-351(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [6] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [7] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANT LEU-27. Tissue: Liver. |
| [8] | "Diabetes mutations delineate an atypical POU domain in HNF-1alpha." Chi Y.I., Frantz J.D., Oh B.C., Hansen L., Dhe-Paganon S., Shoelson S.E. Mol. Cell 10:1129-1137(2002) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (2.6 ANGSTROMS) OF 85-278 IN COMPLEX WITH DNA, FUNCTION, DNA-BINDING, MUTAGENESIS OF ASN-127; GLU-132; PHE-177; ILE-186; THR-190; ASN-202; VAL-246 AND ASN-257, CHARACTERIZATION OF VARIANTS MODY3 PHE-142 AND GLN-205. |
| [9] | "Diabetes mellitus due to misfolding of a beta-cell transcription factor: stereospecific frustration of a Schellman motif in HNF-1alpha." Narayana N., Phillips N.B., Hua Q.X., Jia W., Weiss M.A. J. Mol. Biol. 362:414-429(2006) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (1.4 ANGSTROMS) OF 2-32, CIRCULAR DICHROISM. |
| [10] | "Novel mutations and a mutational hotspot in the MODY3 gene." Glucksmann M.A., Lehto M., Tayber O., Scotti S., Berkemeier L., Pulido J.C., Wu Y., Nir W.-J., Fang L., Markel P., Munnelly K.D., Goranson J., Orho M., Young B.M., Whitacre J.L., McMenimen C., Wantman M., Tuomi T. Thomas J.D.Diabetes 46:1081-1086(1997) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS MODY3 ARG-107; TRP-131; MET-260 AND HIS-272. |
| [11] | "Mutations in the hepatocyte nuclear factor-1alpha/MODY3 gene in Japanese subjects with early- and late-onset NIDDM." Iwasaki N., Oda N., Ogata M., Hara M., Hinokio Y., Oda Y., Yamagata K., Kanematsu S., Ohgawara H., Omori Y., Bell G.I. Diabetes 46:1504-1508(1997) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS MODY3 HIS-12; GLN-131; GLN-205 AND CYS-263, VARIANT NIDDM ASP-191. |
| [12] | "Mutations in the hepatocyte nuclear factor-1alpha gene (MODY3) are not a major cause of late-onset NIDDM in Japanese subjects." Yamada S., Nishigori H., Onda H., Takahashi K., Kitano N., Morikawa A., Takeuchi T., Takeda J. Diabetes 46:1512-1513(1997) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANT NIDDM MET-254, VARIANTS LEU-27 AND ASN-487. |
| [13] | "Identification of mutations in the hepatocyte nuclear factor (HNF)-1-alpha gene in Japanese subjects with IDDM." Yamada S., Nishigori H., Onda H., Utsugi T., Yanagawa T., Maruyama T., Onigata K., Nagashima K., Nagai R., Morikawa A., Takeuchi T., Takeda J. Diabetes 46:1643-1647(1997) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS IDDM20 HIS-272 AND GLY-583. |
| [14] | "An automated fluorescent single-strand conformation polymorphism technique for screening mutations in the hepatocyte nuclear factor-1alpha gene (maturity-onset diabetes of the young)." Boutin P., Chevre J.-C., Hani E.H., Gomis R., Pardini V.C., Guillausseau P.-J., Vaxillaire M., Velho G., Froguel P. Diabetes 46:2108-2109(1997) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS MODY3, VARIANT ATYPICAL DIABETES SER-574. |
| [15] | "Mutations in the hepatocyte nuclear factor-1alpha gene in MODY and early-onset NIDDM: evidence for a mutational hotspot in exon 4." Kaisaki P.J., Menzel S., Lindner T., Oda N., Rjasanowski I., Sahm J., Meincke G., Schulze J., Schmechel H., Petzold C., Ledermann H.M., Sachse G., Boriraj V.V., Menzel R., Kerner W., Turner R.C., Yamagata K., Bell G.I. Diabetes 46:528-535(1997) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS MODY3 GLN-131; GLN-229; GLY-241 AND HIS-272. |
| [16] | "Mutations in the hepatocyte nuclear factor-1alpha gene are a common cause of maturity-onset diabetes of the young in the U.K." Frayling T.M., Bulman M.P., Ellard S., Appleton M., Dronsfield M.J., Mackie A.D., Baird J.D., Kaisaki P.J., Yamagata K., Bell G.I., Bain S.C., Hattersley A.T. Diabetes 46:720-725(1997) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS MODY3 THR-129; TRP-131; TRP-159; LEU-519 AND ILE-620. |
| [17] | "Novel MODY3 mutations in the hepatocyte nuclear factor-1alpha gene: evidence for a hyperexcitability of pancreatic beta-cells to intravenous secretagogues in a glucose-tolerant carrier of a P447L mutation." Hansen T., Eiberg H., Rouard M., Vaxillaire M., Moeller A.M., Rasmussen S.K., Fridberg M., Urhammer S.A., Holst J.J., Almind K., Echwald S.M., Hansen L., Bell G.I., Pedersen O. Diabetes 46:726-730(1997) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS MODY3 ASN-128; TYR-143 AND LEU-447. |
| [18] | "A prevalent amino acid polymorphism at codon 98 in the hepatocyte nuclear factor-1alpha gene is associated with reduced serum C-peptide and insulin responses to an oral glucose challenge." Urhammer S.A., Fridberg M., Hansen T., Rasmussen S.K., Moeller A.M., Clausen J.O., Pedersen O. Diabetes 46:912-916(1997) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS LEU-27; VAL-98 AND ASN-487. |
| [19] | "Genetic variation in the hepatocyte nuclear factor-1 alpha gene in Danish Caucasians with late-onset NIDDM." Urhammer S.A., Rasmussen S.K., Kaisaki P.J., Oda N., Yamagata K., Moeller A.M., Fridberg M., Hansen L., Hansen T., Bell G.I., Pedersen O. Diabetologia 40:473-475(1997) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANT NIDDM GLN-583, VARIANTS LEU-27; VAL-98 AND ASN-487. |
| [20] | "Identification of nine novel mutations in the hepatocyte nuclear factor 1 alpha gene associated with maturity-onset diabetes of the young (MODY3)." Vaxillaire M., Rouard M., Yamagata K., Oda N., Kaisaki P.J., Boriraj V.V., Chevre J.-C., Boccio V., Cox R.D., Lathrop G.M., Dussoix P., Philippe J., Timsit J., Charpentier G., Velho G., Bell G.I., Froguel P. Hum. Mol. Genet. 6:583-586(1997) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS MODY3 CYS-122; PHE-142 AND GLN-159. |
| [21] | "Hepatocyte nuclear factor 1alpha coding mutations are an uncommon contributor to early-onset type 2 diabetes in Ashkenazi Jews." Behn P.S., Wasson J., Chayen S., Smolovitch I., Thomas J.D., Glaser B., Permutt M.A. Diabetes 47:967-969(1998) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS LEU-27; ASN-487 AND ARG-514. |
| [22] | "Mutation screening in 18 Caucasian families suggest the existence of other MODY genes." Chevre J.-C., Hani E.H., Boutin P., Vaxillaire M., Blanche H., Vionnet N., Pardini V.C., Timsit J., Larger E., Charpentier G., Beckers D., Maes M., Bellanne-Chantelot C., Velho G., Froguel P. Diabetologia 41:1017-1023(1998) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS MODY3 ASP-31; TRP-159; THR-161; TRP-200 AND TRP-271. |
| [23] | "Mutations in the hepatocyte nuclear factor-1alpha gene in Caucasian families originally classified as having type I diabetes." Moeller A.M., Dalgaard L.T., Pociot F., Nerup J., Hansen T., Pedersen O. Diabetologia 41:1528-1531(1998) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS IDDM20 LYS-48 AND GLY-241. |
| [24] | "Linkage and molecular scanning analyses of MODY3/hepatocyte nuclear factor-1 alpha gene in typical familial type 2 diabetes: evidence for novel mutations in exons 8 and 10." Elbein S.C., Teng K., Yount P., Scroggin E. J. Clin. Endocrinol. Metab. 83:2059-2065(1998) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS MODY3 ARG-537 AND LYS-619. |
| [25] | "Mutations in the hepatocyte nuclear factor-1 alpha gene 'MODY3' are not a major cause of early-onset non-insulin-dependent 'type 2' diabetes mellitus in Japanese." Nishigori H., Yamada S., Kohama T., Utsugi T., Shimizu H., Takeuchi T., Takeda J. J. Hum. Genet. 43:107-110(1998) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS LEU-27 AND ASN-487. |
| [26] | "Identification of mutations in the hepatocyte nuclear factor-1alpha gene in Japanese subjects with early-onset NIDDM and functional analysis of the mutant proteins." Yamada S., Tomura H., Nishigori H., Sho K., Mabe H., Iwatani N., Takumi T., Kito Y., Moriya N., Muroya K., Ogata T., Onigata K., Morikawa A., Inoue I., Takeda J. Diabetes 48:645-648(1999) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS MODY3 HIS-12; ASN-158; GLN-159 AND CYS-203. |
| [27] | "Allelic drop-out in exon 2 of the hepatocyte nuclear factor-1alpha gene hinders the identification of mutations in three families with maturity-onset diabetes of the young." Ellard S., Bulman M.P., Frayling T.M., Allen L.I.S., Dronsfield M.J., Tack C.J., Hattersley A.T. Diabetes 48:921-923(1999) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS MODY3 GLU-117 AND TYR-143. |
| [28] | "Three new mutations in the hepatocyte nuclear factor-1alpha gene in Japanese subjects with diabetes mellitus: clinical features and functional characterization." Yoshiuchi I., Yamagata K., Yang Q., Iwahashi H., Okita K., Yamamoto K., Oue T., Imagawa A., Hamaguchi T., Yamasaki T., Horikawa Y., Satoh T., Nakajima H., Miyazaki J., Higashiyama S., Miyagawa J., Namba M., Hanafusa T., Matsuzawa Y. Diabetologia 42:621-626(1999) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANT NIDDM CYS-272, VARIANT IDDM20 ARG-415. |
| [29] | "Molecular genetics of diabetes mellitus in Chinese subjects: identification of mutations in glucokinase and hepatocyte nuclear factor-1alpha genes in patients with early-onset type 2 diabetes mellitus/MODY." Ng M.C.Y., Cockburn B.N., Lindner T.H., Yeung V.T.F., Chow C.-C., So W.-Y., Li J.K.Y., Lo Y.M.D., Lee Z.S.K., Cockram C.S., Critchley J.A.J.H., Bell G.I., Chan J.C.N. Diabet. Med. 16:956-963(1999) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS MODY3 ARG-20; HIS-203; CYS-432 AND MET-618. |
| [30] | "Non-penetrance in a MODY 3 family with a mutation in the hepatic nuclear factor 1alpha gene: implications for predictive testing." Miedzybrodzka Z., Hattersley A.T., Ellard S., Pearson D., de Silva D., Harvey R., Haites N. Eur. J. Hum. Genet. 7:729-732(1999) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANT MODY3 ILE-620. |
| [31] | "The hepatic nuclear factor-1alpha G319S variant is associated with early-onset type 2 diabetes in Canadian Oji-Cree." Hegele R.A., Cao H., Harris S.B., Hanley A.J.G., Zinman B. J. Clin. Endocrinol. Metab. 84:1077-1082(1999) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANT SER-319. |
| [32] | "Structural basis of dimerization, coactivator recognition and MODY3 mutations in HNF-1alpha." Rose R.B., Bayle J.H., Endrizzi J.A., Cronk J.D., Crabtree G.R., Alber T. Nat. Struct. Biol. 7:744-748(2000) [PubMed] [Europe PMC] [Abstract] Cited for: CHARACTERIZATION OF VARIANTS MODY3 HIS-12; ARG-20 AND ASP-31, FUNCTION, SUBCELLULAR LOCATION, INTERACTION WITH PCBD1. |
| [33] | "Bi-allelic inactivation of TCF1 in hepatic adenomas." Bluteau O., Jeannot E., Bioulac-Sage P., Marques J.M., Blanc J.-F., Bui H., Beaudoin J.-C., Franco D., Balabaud C., Laurent-Puig P., Zucman-Rossi J. Nat. Genet. 32:312-315(2002) [PubMed] [Europe PMC] [Abstract] Cited for: INVOLVEMENT IN HEPATIC ADENOMAS, VARIANTS TYR-127; CYS-165; CYS-206; LEU-206; SER-237; GLY-244; PRO-250; CYS-268; GLU-273; SER-574 AND GLN-583. |
| [34] | "The consensus coding sequences of human breast and colorectal cancers." Sjoeblom T., Jones S., Wood L.D., Parsons D.W., Lin J., Barber T.D., Mandelker D., Leary R.J., Ptak J., Silliman N., Szabo S., Buckhaults P., Farrell C., Meeh P., Markowitz S.D., Willis J., Dawson D., Willson J.K.V. Velculescu V.E.Science 314:268-274(2006) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANT [LARGE SCALE ANALYSIS] GLU-273. |
| + | Additional computationally mapped references. |
Web resources
| GeneReviews |
| Wikipedia Hepatocyte nuclear factors entry |
| SeattleSNPs |
Cross-references
Sequence databases | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | M57732 mRNA. Translation: AAA88077.1. X71346 mRNA. Translation: CAB59201.1. U72618 U72617 Genomic DNA. Translation: AAC51137.1.EF641294 Genomic DNA. Translation: ABR09270.1. AC079602 Genomic DNA. No translation available. CH471054 Genomic DNA. Translation: EAW98226.1. BC104908 mRNA. Translation: AAI04909.1. BC104910 mRNA. Translation: AAI04911.1. | ||||||||||||||||||
| IPI | IPI00025839. IPI00219056. IPI00411416. | ||||||||||||||||||
| PIR | A36749. | ||||||||||||||||||
| RefSeq | NP_000536.5. NM_000545.5. | ||||||||||||||||||
| UniGene | Hs.654455. | ||||||||||||||||||
3D structure databases | |||||||||||||||||||
| PDBe RCSB PDB PDBj |
| ||||||||||||||||||
| ProteinModelPortal | P20823. | ||||||||||||||||||
| ModBase | Search... | ||||||||||||||||||
Protein-protein interaction databases | |||||||||||||||||||
| DIP | DIP-33544N. | ||||||||||||||||||
| IntAct | P20823. 7 interactions. | ||||||||||||||||||
| STRING | 9606.ENSP00000257555. | ||||||||||||||||||
PTM databases | |||||||||||||||||||
| PhosphoSite | P20823. | ||||||||||||||||||
Polymorphism databases | |||||||||||||||||||
| DMDM | 51338763. | ||||||||||||||||||
Proteomic databases | |||||||||||||||||||
| PaxDb | P20823. | ||||||||||||||||||
| PRIDE | P20823. | ||||||||||||||||||
Protocols and materials databases | |||||||||||||||||||
| DNASU | 6927. | ||||||||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||||||||
Genome annotation databases | |||||||||||||||||||
| Ensembl | ENST00000257555; ENSP00000257555; ENSG00000135100. | ||||||||||||||||||
| GeneID | 6927. | ||||||||||||||||||
| KEGG | hsa:6927. | ||||||||||||||||||
| UCSC | uc001tzg.3. human. | ||||||||||||||||||
Organism-specific databases | |||||||||||||||||||
| CTD | 6927. | ||||||||||||||||||
| GeneCards | GC12P121416. | ||||||||||||||||||
| H-InvDB | HIX0036847. | ||||||||||||||||||
| HGNC | HGNC:11621. HNF1A. | ||||||||||||||||||
| HPA | CAB010430. | ||||||||||||||||||
| MIM | 142330. phenotype. 142410. gene. 600496. phenotype. 606391. phenotype. 612520. phenotype. | ||||||||||||||||||
| neXtProt | NX_P20823. | ||||||||||||||||||
| Orphanet | 552. MODY syndrome. | ||||||||||||||||||
| PharmGKB | PA36380. | ||||||||||||||||||
| GenAtlas | Search... | ||||||||||||||||||
Phylogenomic databases | |||||||||||||||||||
| eggNOG | NOG79356. | ||||||||||||||||||
| HOGENOM | HOG000015305. | ||||||||||||||||||
| HOVERGEN | HBG005980. | ||||||||||||||||||
| InParanoid | P20823. | ||||||||||||||||||
| KO | K08036. | ||||||||||||||||||
| OrthoDB | EOG4WH8M1. | ||||||||||||||||||
Enzyme and pathway databases | |||||||||||||||||||
| Pathway_Interaction_DB | wnt_canonical_pathway. Canonical Wnt signaling pathway. hnf3bpathway. FOXA2 and FOXA3 transcription factor networks. ps1pathway. Presenilin action in Notch and Wnt signaling. | ||||||||||||||||||
Gene expression databases | |||||||||||||||||||
| ArrayExpress | P20823. | ||||||||||||||||||
| Bgee | P20823. | ||||||||||||||||||
| CleanEx | HS_HNF1A. | ||||||||||||||||||
| Genevestigator | P20823. | ||||||||||||||||||
| GermOnline | ENSG00000135100. Homo sapiens. | ||||||||||||||||||
Family and domain databases | |||||||||||||||||||
| Gene3D | 1.10.10.60. 1 hit. 1.10.260.40. 1 hit. | ||||||||||||||||||
| InterPro | IPR006899. HNF-1_N. IPR023219. HNF1_dimer_dom. IPR006898. HNF1a_C. IPR006897. HNF1b_C. IPR001356. Homeodomain. IPR009057. Homeodomain-like. IPR010982. Lambda_DNA-bd_dom. [Graphical view] | ||||||||||||||||||
| Pfam | PF04814. HNF-1_N. 1 hit. PF04813. HNF-1A_C. 1 hit. PF04812. HNF-1B_C. 1 hit. PF00046. Homeobox. 1 hit. [Graphical view] | ||||||||||||||||||
| SMART | SM00389. HOX. 1 hit. [Graphical view] | ||||||||||||||||||
| SUPFAM | SSF100957. HNF1_dimer_dom. 1 hit. SSF46689. Homeodomain_like. 1 hit. SSF47413. Lambda_like_DNA. 1 hit. | ||||||||||||||||||
| PROSITE | PS00027. HOMEOBOX_1. 1 hit. PS50071. HOMEOBOX_2. 1 hit. [Graphical view] | ||||||||||||||||||
| ProtoNet | Search... | ||||||||||||||||||
Other | |||||||||||||||||||
| EvolutionaryTrace | P20823. | ||||||||||||||||||
| GenomeRNAi | 6927. | ||||||||||||||||||
| NextBio | 27105. | ||||||||||||||||||
| SOURCE | Search... | ||||||||||||||||||
Entry information
| Entry name | HNF1A_HUMAN | ||||||||
| Accession | Primary (citable) accession number: P20823 Secondary accession number(s): A5Z2R8, Q2M3H2, Q99861 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 12 Human chromosome 12: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with
