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P20471 (NDVB_RHIME) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 81. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Protein ndvB
Gene names
Name:ndvB
Ordered Locus Names:R03286
ORF Names:SMc04382
OrganismRhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti) [Complete proteome] [HAMAP]
Taxonomic identifier266834 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Sinorhizobium/Ensifer group › Sinorhizobium

Protein attributes

Sequence length2832 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Function

Involved in the production of beta-(1,2)-glucan. It is involved not only in invasion but also in bacteroid development.

Subcellular location

Cell inner membrane; Multi-pass membrane protein.

Sequence similarities

To A.tumefaciens ChvB.

Sequence caution

The sequence AAA26305.1 differs from that shown. Reason: Erroneous initiation.

Ontologies

Keywords
   Cellular componentCell inner membrane
Cell membrane
Membrane
   DomainTransmembrane
Transmembrane helix
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Cellular componentintegral to membrane

Inferred from electronic annotation. Source: UniProtKB-KW

plasma membrane

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular functioncarbohydrate binding

Inferred from electronic annotation. Source: InterPro

catalytic activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 28322832Protein ndvB
PRO_0000096773

Regions

Transmembrane411 – 43121Helical; Potential
Transmembrane444 – 46421Helical; Potential
Transmembrane810 – 83021Helical; Potential
Transmembrane831 – 85121Helical; Potential
Transmembrane959 – 97921Helical; Potential

Experimental info

Sequence conflict471T → A in AAA26305. Ref.1
Sequence conflict11871L → F in AAA26305. Ref.1
Sequence conflict26021D → G in AAA26305. Ref.1

Sequences

Sequence LengthMass (Da)Tools
P20471 [UniParc].

Last modified November 2, 2001. Version 2.
Checksum: 171EA89F03A936F2

FASTA2,832315,751
        10         20         30         40         50         60 
MLQNTTQSNL PREPEAKQID YNDSIRSTYF SIDDLRACGA SLAEKGTSAL PGFFPFEFRA 

        70         80         90        100        110        120 
RHRENEKEIL RVYRATAADV EAGASITPAA EWLLDNHHVV EEAIQEVRRD FPRRFYRQLP 

       130        140        150        160        170        180 
TLSVSGTVIP RTMALAWLYV AHTHSTVTRE SITAMVEGFQ EHETLKIGEL WALPSILRFV 

       190        200        210        220        230        240 
LIENLRRIAI RVERSRGMRR KANEVADQLI RLNDPEGCRT LLVESEALAA DNTFIAQLLY 

       250        260        270        280        290        300 
RMRDGSQSSG AVIAWIEERL ERRGTDVEEA LVAEQNRLSS GNATMSNIIR SLREIDDTDW 

       310        320        330        340        350        360 
AVWFESVSKI DATLREGSDY AALDFGSRNT YRDTIEKLAR RSGHSEHEVT EIAIEMVEEA 

       370        380        390        400        410        420 
KAAAAVEAPL QEPNVGSFLV GKQRLALEKR IGYSPSIFQH LIRSVRKLDW FAIAGPNILL 

       430        440        450        460        470        480 
TILAMIVVYA FVSPMDIPSG AKLIMLLLFA LPASEGAMGL FNTVFTLFAK PSRLVGYEFL 

       490        500        510        520        530        540 
DGIPEDARTL VVVPCLIAKR DHVDELVRNL EVHYLANPRG EIYFALLSDW ADSKSEEAPA 

       550        560        570        580        590        600 
DTDVLEYAKR EIASLSARYA YDGKTRFFLL HRRRLYNEAE GVWMGWERKR GKLHELNLLL 

       610        620        630        640        650        660 
RGDRDTSFLQ GANMVPEGVQ YVMTLDSDTR LMRDAVTKLV GKLYHPINRP VVNPRTQEVV 

       670        680        690        700        710        720 
TGYSLLQPRV TPSLTTGSEA SAFQRIFTIN RGIDPYVFTV SDVYQDIAGE GSFTGKGLYH 

       730        740        750        760        770        780 
VDAFEAALKS RIEENAVLSH DLLEGSYARC ALVTDIELVE DFPIRYEVEM SRQHRWARGD 

       790        800        810        820        830        840 
WQLLPYIFNP KNGLSMLGRW KMYDNLRRSL IPVAWLAASV MGWYYMEPTP ALIWQLVLIF 

       850        860        870        880        890        900 
SLFVAPTLSL ISGIMPRRND IVARAHLHTV LSDIRAANAQ VALRIVFIAH NAAMMADAIV 

       910        920        930        940        950        960 
RSLYRTFVSR KLMLEWRTAA QVQSAGHGSI GDYFRAMWTA PALALVSLAL AAISDTGLPF 

       970        980        990       1000       1010       1020 
IGLPFALIWA ASPAVAWFVS QSAETEDQLV VSEEAIEEMR KIARRTWRYF EAFVTAEQNF 

      1030       1040       1050       1060       1070       1080 
LPPDNFQETP QPVLAERTSP TNIGVYLLSV MSARSFGWIG FEETITRLEQ TIATIDRMPK 

      1090       1100       1110       1120       1130       1140 
YRGHLFNWYR TRGLEPMEPR YVSSVDSGNL AGHLIAVSSM CREWAEAPSA HVQGNLDGIG 

      1150       1160       1170       1180       1190       1200 
DVAAILKEAL NELPDDRKTV RPLRRLVEER IAGFQNALAA VKRERELASI RVINLAVLAR 

      1210       1220       1230       1240       1250       1260 
DMHKLTVNLD HEVRTVQSGE VATWAGSLVA ACEAHIADGV FDLGAIEALR QRLLVLKERA 

      1270       1280       1290       1300       1310       1320 
RDIAFSMDFS FLFRPERRLL SIGYRVNANE LDEACYDLLA SEARLTSLFA IAKGDLPTEH 

      1330       1340       1350       1360       1370       1380 
WYKLGRPIVP IGARGALVSW SGSMFEYLMP PLVMQERQGG ILNQTNNLVV QEQINHGRRL 

      1390       1400       1410       1420       1430       1440 
GTPWGISEAA FNARDHELTY QYTNFGVPTL GLKRGLGQNA VIAPYASILA CMYDPKSALA 

      1450       1460       1470       1480       1490       1500 
NLARLREVGA LGAYGYHDAV DFTPTRVPEG QKCAVVRNYY AHHHGMSVAA VANVVFNGQL 

      1510       1520       1530       1540       1550       1560 
REWFHADPVI EAAELLLQEK APRDIPVMAA KREPEALGKG QADLLRPEVR VVEDPINQDR 

      1570       1580       1590       1600       1610       1620 
ETVLLSNGHY SVMLTATGAG YARWNGQSVT RWTPDPVEDR TGTFIFLRDT VTGDWWSATA 

      1630       1640       1650       1660       1670       1680 
EPRRAPGEKT VTRFGDDKAE FVKTVGDLTS EVECIVATEH DAEGRRVILL NTGTEDRFIE 

      1690       1700       1710       1720       1730       1740 
VTSYAEPVLA MDDADSSHPT FSKMFLRTEI SRHGDVIWVS RNKRSPGDPD IEVAHLVTDN 

      1750       1760       1770       1780       1790       1800 
AGSERHTQAE TDRRRFLGQG RTLAEAAAFD PGATLSGTDG FTLDPIVSLR RVVRVPAGKK 

      1810       1820       1830       1840       1850       1860 
VSVIFWTIAA PDREGVDRAI DRYRHPETFN HELIHAWTRS QVQMRHVGIT SKEAASFQML 

      1870       1880       1890       1900       1910       1920 
GRYLVYPDMH LRADAETVKT GLASQSALWP LAISGDFPIF CLRINDDGDL GIAREALRAQ 

      1930       1940       1950       1960       1970       1980 
EYLRARGITA DLVVVNERAS SYAQDLQHTL DSMCENLRLR GLSDGPRQHI FAVRRDLMEP 

      1990       2000       2010       2020       2030       2040 
ETWSTLISAS RAVFHARNGT ISDQIARATS LYSKSSEKKE EGAEMLLPVI READARTAVE 

      2050       2060       2070       2080       2090       2100 
LDGGDLDFWN GFGGFAEDGR EYAVRLRGGE ATPQPWINVI SNEQFGFHVS AEGAAFSWSR 

      2110       2120       2130       2140       2150       2160 
NSRDYQLTPW TNDAVVNRPG EAIFVRDMAS GAVLTPYAAL SRRKSALFET RHGLGYSRFL 

      2170       2180       2190       2200       2210       2220 
STQDELEIEA MHTVHRTLPA KLVRLTIRNR SSAARKLRVY GYAEWVLGNN RSRTAPFVLS 

      2230       2240       2250       2260       2270       2280 
EWDESAKTLV ATNPYSIDYP GRCAFFASDG DIAGYTASRR EFLGRAGGIL APQAVISGAE 

      2290       2300       2310       2320       2330       2340 
LTGSTDVDGD ACAALATDIT VEAGVERQVT FFLGDADNPD QVRAVLEELR ADSFGAALEA 

      2350       2360       2370       2380       2390       2400 
AKAFWGDFTG VVKVETPDRA FNHMINHWLP YQALGCRIMA RSAFYQASGA FGFRDQLQDT 

      2410       2420       2430       2440       2450       2460 
LAFLIHRPAL ARAQILNAAA RQFVEGDVQH WWLPGTDAGV RTMISDDVVW LAHAVAHYCA 

      2470       2480       2490       2500       2510       2520 
VTGEEDILKE KVPFITGPAL EEGQHDSFYK PDVADEVGDV YEHCARALDL AIHRTGANGL 

      2530       2540       2550       2560       2570       2580 
PLILGGDWND GMNRVGEAGE GTSVWLGWFL AGTLRAFLPY ARARKDKPRV ALWERHLEAL 

      2590       2600       2610       2620       2630       2640 
KDALEQAGWD GDYYRRGYYD DDTPLGSAEN GECRIDSIAQ SWSTLSGEGD KERSLRAMDA 

      2650       2660       2670       2680       2690       2700 
VMAELVDPEK RIVRLFTPPL ETTKQDPGYI KAYPPGVREN GGQYTHAATW VVLAFAAQER 

      2710       2720       2730       2740       2750       2760 
AEEAWRTFRM LNPVSHALSQ VDAEHYRVEP YVVAADIYGE GALAGRGGWT WYTGSAGWLY 

      2770       2780       2790       2800       2810       2820 
RAGVEGILGI RKRGDKLLIR PVLPSEWPGY SAEVRVNGTT HRISVSRDSK SGEPVVSVNN 

      2830 
SVTKNAHEGV LL

« Hide

References

« Hide 'large scale' references
[1]"The ndvB locus of Rhizobium meliloti encodes a 319-kDa protein involved in the production of beta-(1-->2)-glucan."
Ielpi L., Dylan T., Ditta G.S., Helinski D.R., Stanfield S.W.
J. Biol. Chem. 265:2843-2851(1990) [PubMed: 2154461] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[2]"Analysis of the chromosome sequence of the legume symbiont Sinorhizobium meliloti strain 1021."
Capela D., Barloy-Hubler F., Gouzy J., Bothe G., Ampe F., Batut J., Boistard P., Becker A., Boutry M., Cadieu E., Dreano S., Gloux S., Godrie T., Goffeau A., Kahn D., Kiss E., Lelaure V., Masuy D. expand/collapse author list , Pohl T., Portetelle D., Puehler A., Purnelle B., Ramsperger U., Renard C., Thebault P., Vandenbol M., Weidner S., Galibert F.
Proc. Natl. Acad. Sci. U.S.A. 98:9877-9882(2001) [PubMed: 11481430] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 1021.
[3]"The composite genome of the legume symbiont Sinorhizobium meliloti."
Galibert F., Finan T.M., Long S.R., Puehler A., Abola P., Ampe F., Barloy-Hubler F., Barnett M.J., Becker A., Boistard P., Bothe G., Boutry M., Bowser L., Buhrmester J., Cadieu E., Capela D., Chain P., Cowie A. expand/collapse author list , Davis R.W., Dreano S., Federspiel N.A., Fisher R.F., Gloux S., Godrie T., Goffeau A., Golding B., Gouzy J., Gurjal M., Hernandez-Lucas I., Hong A., Huizar L., Hyman R.W., Jones T., Kahn D., Kahn M.L., Kalman S., Keating D.H., Kiss E., Komp C., Lelaure V., Masuy D., Palm C., Peck M.C., Pohl T.M., Portetelle D., Purnelle B., Ramsperger U., Surzycki R., Thebault P., Vandenbol M., Vorhoelter F.J., Weidner S., Wells D.H., Wong K., Yeh K.-C., Batut J.
Science 293:668-672(2001) [PubMed: 11474104] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 1021.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		J05219 Genomic DNA. Translation: AAA26305.1. Different initiation.
AL591688 Genomic DNA. Translation: CAC47865.1.
PIRA35548.
RefSeqNP_387392.1. NC_003047.1.

3D structure databases

ProteinModelPortalP20471.
ModBaseSearch...

Protein family/group databases

CAZyGH94. Glycoside Hydrolase Family 94.
GT84. Glycosyltransferase Family 84.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID1234980.
GenomeReviewsGene locus R03286 in contig AL591688_GR.
KEGGsme:SMc04382.
NMPDRfig|266834.1.peg.4580.
PATRIC23636246. VBISinMel96828_4845.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG294780.
OMAGGDWNDG.
ProtClustDBCLSK864957.

Enzyme and pathway databases

BioCycSMEL266834:SMC04382-MONOMER.

Family and domain databases

InterProIPR008928. 6-hairpin_glycosidase-like.
IPR009342. Carb-bd_put_dom.
IPR019282. DUF2329.
IPR021478. DUF3131.
IPR011013. Glyco_hydro-type_carb-bd.
IPR010383. Glyco_transf_36.
IPR010403. GT36_AF.
[Graphical view]
KOK13688.
PfamPF06204. CBM_X. 2 hits.
PF10091. DUF2329. 1 hit.
PF11329. DUF3131. 1 hit.
PF06165. Glyco_transf_36. 2 hits.
PF06205. GT36_AF. 2 hits.
[Graphical view]
SMARTSM01068. CBM_X. 2 hits.
[Graphical view]
SUPFAMSSF74650. Gal_mut_like. 2 hits.
SSF48208. Glyco_trans_6hp. 1 hit.
ProtoNetSearch...

Entry information

Entry nameNDVB_RHIME
AccessionPrimary (citable) accession number: P20471
Entry history
Integrated into UniProtKB/Swiss-Prot: February 1, 1991
Last sequence update: November 2, 2001
Last modified: January 25, 2012
This is version 81 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info