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Protein

60S ribosomal protein L21

Gene

Rpl21

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L21
Gene namesi
Name:Rpl21
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Unplaced

Organism-specific databases

RGDi68390. Rpl21.

Subcellular locationi

GO - Cellular componenti

  • cytosolic large ribosomal subunit Source: RGD
  • ribosome Source: RGD
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methionineiRemovedBy similarity
Chaini2 – 16015960S ribosomal protein L21PRO_0000149672Add
BLAST

Proteomic databases

PaxDbiP20280.
PRIDEiP20280.

PTM databases

iPTMnetiP20280.
PhosphoSiteiP20280.
SwissPalmiP20280.

Interactioni

Protein-protein interaction databases

BioGridi249469. 1 interaction.
MINTiMINT-4578597.
STRINGi10116.ENSRNOP00000051312.

Structurei

3D structure databases

ProteinModelPortaliP20280.
SMRiP20280. Positions 4-99.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L21e family.Curated

Phylogenomic databases

eggNOGiKOG1732. Eukaryota.
COG2139. LUCA.
HOGENOMiHOG000194513.
HOVERGENiHBG001518.
InParanoidiP20280.
KOiK02889.
PhylomeDBiP20280.

Family and domain databases

Gene3Di2.30.30.70. 1 hit.
InterProiIPR001147. Ribosomal_L21e.
IPR018259. Ribosomal_L21e_CS.
IPR008991. Translation_prot_SH3-like.
[Graphical view]
PANTHERiPTHR20981. PTHR20981. 1 hit.
PfamiPF01157. Ribosomal_L21e. 1 hit.
[Graphical view]
SUPFAMiSSF50104. SSF50104. 1 hit.
PROSITEiPS01171. RIBOSOMAL_L21E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P20280-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTNTKGKRRG TRYMFSRPFR KHGVVPLATY MRIYKKGDIV DIKGMGTVQK
60 70 80 90 100
GMPHKCYHGK TGRVYNVTQH AVGIIVNKQV KGKILAKRIN VRIEHIKHSK
110 120 130 140 150
SRDSFLKRVK ENDQKKKEAK EKGTWVQLNG QPAPPREAHF VRTNGKEPEL
160
LEPIPYEFMA
Length:160
Mass (Da):18,466
Last modified:January 23, 2007 - v3
Checksum:i68F265B18EAFB876
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M27905 mRNA. Translation: AAA41504.1.
X15216 mRNA. Translation: CAA33286.1.
PIRiA33295. R5RT21.
RefSeqiNP_445782.1. NM_053330.1.
UniGeneiRn.129926.
Rn.156707.
Rn.201357.
Rn.203267.
Rn.83200.

Genome annotation databases

GeneIDi79449.
KEGGirno:79449.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M27905 mRNA. Translation: AAA41504.1.
X15216 mRNA. Translation: CAA33286.1.
PIRiA33295. R5RT21.
RefSeqiNP_445782.1. NM_053330.1.
UniGeneiRn.129926.
Rn.156707.
Rn.201357.
Rn.203267.
Rn.83200.

3D structure databases

ProteinModelPortaliP20280.
SMRiP20280. Positions 4-99.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi249469. 1 interaction.
MINTiMINT-4578597.
STRINGi10116.ENSRNOP00000051312.

PTM databases

iPTMnetiP20280.
PhosphoSiteiP20280.
SwissPalmiP20280.

Proteomic databases

PaxDbiP20280.
PRIDEiP20280.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi79449.
KEGGirno:79449.

Organism-specific databases

CTDi6144.
RGDi68390. Rpl21.

Phylogenomic databases

eggNOGiKOG1732. Eukaryota.
COG2139. LUCA.
HOGENOMiHOG000194513.
HOVERGENiHBG001518.
InParanoidiP20280.
KOiK02889.
PhylomeDBiP20280.

Miscellaneous databases

PROiP20280.

Family and domain databases

Gene3Di2.30.30.70. 1 hit.
InterProiIPR001147. Ribosomal_L21e.
IPR018259. Ribosomal_L21e_CS.
IPR008991. Translation_prot_SH3-like.
[Graphical view]
PANTHERiPTHR20981. PTHR20981. 1 hit.
PfamiPF01157. Ribosomal_L21e. 1 hit.
[Graphical view]
SUPFAMiSSF50104. SSF50104. 1 hit.
PROSITEiPS01171. RIBOSOMAL_L21E. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL21_RAT
AccessioniPrimary (citable) accession number: P20280
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1991
Last sequence update: January 23, 2007
Last modified: September 7, 2016
This is version 112 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.