P20273 (CD22_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 149.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: B-cell receptor CD22 Alternative name(s): B-lymphocyte cell adhesion molecule Short name=BL-CAM Sialic acid-binding Ig-like lectin 2 Short name=Siglec-2 T-cell surface antigen Leu-14 CD_antigen=CD22 | ||||
| Gene names |
| ||||
| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 847 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Mediates B-cell B-cell interactions. May be involved in the localization of B-cells in lymphoid tissues. Binds sialylated glycoproteins; one of which is CD45. Preferentially binds to alpha-2,6-linked sialic acid. The sialic acid recognition site can be masked by cis interactions with sialic acids on the same cell surface. Upon ligand induced tyrosine phosphorylation in the immune response seems to be involved in regulation of B-cell antigen receptor signaling. Plays a role in positive regulation through interaction with Src family tyrosine kinases and may also act as an inhibitory receptor by recruiting cytoplasmic phosphatases via their SH2 domains that block signal transduction through dephosphorylation of signaling molecules. |
| Subunit structure | Predominantly monomer of isoform CD22-beta. Also found as heterodimer of isoform CD22-beta and a shorter isoform. Interacts with PTPN6/SHP-1, LYN, SYK, PIK3R1/PIK3R2 and PLCG1 upon phosphorylation. Interacts with GRB2, INPP5D and SHC1 upon phosphorylation By similarity. May form a complex with INPP5D/SHIP, GRB2 and SHC1. Ref.8 Ref.9 Ref.10 |
| Subcellular location | |
| Tissue specificity | B-lymphocytes. |
| Domain | Contains 4 copies of a cytoplasmic motif that is referred to as the immunoreceptor tyrosine-based inhibitor motif (ITIM). This motif is involved in modulation of cellular responses. The phosphorylated ITIM motif can bind the SH2 domain of several SH2-containing phosphatases. |
| Post-translational modification | Phosphorylation of Tyr-762, Tyr-807 and Tyr-822 are involved in binding to SYK, GRB2 and SYK, respectively. Phosphorylation of Tyr-842 is involved in binding to SYK, PLCG2 and PIK3R1/PIK3R2. Phosphorylated on tyrosine residues by LYN By similarity. |
| Sequence similarities | Belongs to the immunoglobulin superfamily. SIGLEC (sialic acid binding Ig-like lectin) family. Contains 6 Ig-like C2-type (immunoglobulin-like) domains. Contains 1 Ig-like V-type (immunoglobulin-like) domain. |
| Sequence caution | The sequence CAA36988.1 differs from that shown. Reason: Frameshift at position 806. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Cell adhesion |
| Cellular component | Cell membrane Membrane |
| Coding sequence diversity | Alternative splicing Polymorphism |
| Domain | Immunoglobulin domain Repeat Signal Transmembrane Transmembrane helix |
| Ligand | Lectin |
| PTM | Disulfide bond Glycoprotein Phosphoprotein |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological_process | cell adhesion Non-traceable author statement PubMed 7925291. Source: ProtInc |
| Cellular_component | external side of plasma membrane Inferred from electronic annotation. Source: Compara integral to plasma membraneInferred from electronic annotation. Source: Compara |
| Complete GO annotation... | |
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| LYN | P07948 | 2 | EBI-78277,EBI-79452 | |
| PLCG1 | P19174 | 2 | EBI-78277,EBI-79387 | |
| PTPN6 | P29350 | 4 | EBI-78277,EBI-78260 | |
| SYK | P43405 | 4 | EBI-78277,EBI-78302 |
Alternative products
| This entry describes 3 isoforms produced by alternative splicing. [Align] [Select] Note: Additional isoforms seem to exist. | ||||||
| Isoform CD22-beta (identifier: P20273-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform CD22-alpha (identifier: P20273-2) The sequence of this isoform differs from the canonical sequence as follows: 241-417: Missing. | ||||||
| Isoform 3 (identifier: P20273-3) The sequence of this isoform differs from the canonical sequence as follows: 330-417: Missing. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||
Molecule processing | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Signal peptide | 1 – 19 | 19 | Potential | ||||||||
| Chain | 20 – 847 | 828 | B-cell receptor CD22 | PRO_0000014873 | |||||||
Regions | |||||||||||
| Topological domain | 20 – 687 | 668 | Extracellular Potential | ||||||||
| Transmembrane | 688 – 706 | 19 | Helical; Potential | ||||||||
| Topological domain | 707 – 847 | 141 | Cytoplasmic Potential | ||||||||
| Domain | 20 – 138 | 119 | Ig-like V-type | ||||||||
| Domain | 143 – 235 | 93 | Ig-like C2-type 1 | ||||||||
| Domain | 242 – 326 | 85 | Ig-like C2-type 2 | ||||||||
| Domain | 331 – 416 | 86 | Ig-like C2-type 3 | ||||||||
| Domain | 419 – 500 | 82 | Ig-like C2-type 4 | ||||||||
| Domain | 505 – 582 | 78 | Ig-like C2-type 5 | ||||||||
| Domain | 593 – 676 | 84 | Ig-like C2-type 6 | ||||||||
| Motif | 760 – 765 | 6 | ITIM motif 1 | ||||||||
| Motif | 794 – 799 | 6 | ITIM motif 2 | ||||||||
| Motif | 820 – 825 | 6 | ITIM motif 3 | ||||||||
| Motif | 840 – 845 | 6 | ITIM motif 4 | ||||||||
Sites | |||||||||||
| Binding site | 120 | 1 | Sialic acid By similarity | ||||||||
Amino acid modifications | |||||||||||
| Glycosylation | 67 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 101 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 112 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 135 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 164 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 231 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 363 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 445 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 448 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 479 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 574 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 634 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Disulfide bond | 39 ↔ 167 | By similarity | |||||||||
| Disulfide bond | 44 ↔ 102 | By similarity | |||||||||
| Disulfide bond | 161 ↔ 219 | By similarity | |||||||||
| Disulfide bond | 265 ↔ 309 | By similarity | |||||||||
| Disulfide bond | 353 ↔ 396 | By similarity | |||||||||
| Disulfide bond | 442 ↔ 484 | By similarity | |||||||||
| Disulfide bond | 529 ↔ 571 | By similarity | |||||||||
| Disulfide bond | 616 ↔ 659 | By similarity | |||||||||
Natural variations | |||||||||||
| Alternative sequence | 241 – 417 | 177 | Missing in isoform CD22-alpha. | VSP_002531 | |||||||
| Alternative sequence | 330 – 417 | 88 | Missing in isoform 3. | VSP_045363 | |||||||
| Natural variant | 34 | 1 | A → T. Ref.6 | VAR_014133 | |||||||
| Natural variant | 152 | 1 | Q → E Observed with a marginally higher frequency in patients with systemic lupus erythematosus. Ref.6 | VAR_003913 | |||||||
| Natural variant | 203 | 1 | E → K. Ref.6 | VAR_014134 | |||||||
| Natural variant | 551 | 1 | G → R. Corresponds to variant rs35715143 [ dbSNP | Ensembl ]. | VAR_049903 | |||||||
| Natural variant | 639 | 1 | Y → H. Ref.2 Corresponds to variant rs1058407 [ dbSNP | Ensembl ]. | VAR_014135 | |||||||
| Natural variant | 664 | 1 | S → G. Ref.6 Corresponds to variant rs17719289 [ dbSNP | Ensembl ]. | VAR_003914 | |||||||
| Natural variant | 669 | 1 | R → C. Ref.6 | VAR_003915 | |||||||
| Natural variant | 745 | 1 | G → D. Ref.6 Corresponds to variant rs10406069 [ dbSNP | Ensembl ]. | VAR_003916 | |||||||
Experimental info | |||||||||||
| Sequence conflict | 486 | 1 | A → R in CAA42006. Ref.1 | ||||||||
| Sequence conflict | 788 – 789 | 2 | PD → RT in CAA42006. Ref.1 | ||||||||
Sequences
| ||||||||||||||||||||||||||||||
References
| « Hide 'large scale' references | |
| [1] | "The B-cell antigen CD22 mediates monocyte and erythrocyte adhesion." Stamenkovic I., Seed B. Nature 345:74-77(1990) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM CD22-BETA). |
| [2] | "cDNA cloning of the B cell membrane protein CD22: a mediator of B-B cell interactions." Wilson G.L., Fox C.H., Fauci A.S., Kehrl J.H. J. Exp. Med. 173:137-146(1991) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM CD22-BETA), VARIANT HIS-639. Tissue: Tonsil. |
| [3] | "Genomic structure and chromosomal mapping of the human CD22 gene." Wilson G.L., Najfeld V., Kozlow E., Menniger J., Ward D., Kehrl J.H. J. Immunol. 150:5013-5024(1993) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] (ISOFORMS CD22-ALPHA AND CD22-BETA). |
| [4] | Suzuki Y., Sugano S., Totoki Y., Toyoda A., Takeda T., Sakaki Y., Tanaka A., Yokoyama S. Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3). Tissue: Spleen. |
| [5] | "The DNA sequence and biology of human chromosome 19." Grimwood J., Gordon L.A., Olsen A.S., Terry A., Schmutz J., Lamerdin J.E., Hellsten U., Goodstein D., Couronne O., Tran-Gyamfi M., Aerts A., Altherr M., Ashworth L., Bajorek E., Black S., Branscomb E., Caenepeel S., Carrano A.V. Lucas S.M.Nature 428:529-535(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [6] | "Identification of the gene variations in human CD22." Hatta Y., Tsuchiya N., Matsushita M., Shiota M., Hagiwara K., Tokunaga K. Immunogenetics 49:280-286(1999) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 13-137; 139-239; 241-328 AND 418-502, VARIANTS THR-34; GLU-152; LYS-203; GLY-664; CYS-669 AND ASP-745. |
| [7] | "Natural ligands of the B cell adhesion molecule CD22 beta carry N-linked oligosaccharides with alpha-2,6-linked sialic acids that are required for recognition." Powell L.D., Sgroi D., Sjoberg E.R., Stamenkovic I., Varki A. J. Biol. Chem. 268:7019-7027(1993) [PubMed] [Europe PMC] [Abstract] Cited for: SIALIC ACID-BINDING. |
| [8] | "A role in B cell activation for CD22 and the protein tyrosine phosphatase SHP." Doody G.M., Justement L.B., Delibrias C.C., Matthews R.J., Lin J., Thomas M.L., Fearon D.T. Science 269:242-244(1995) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH PTPN6. |
| [9] | "Involvement of p72syk kinase, p53/56lyn kinase and phosphatidyl inositol-3 kinase in signal transduction via the human B lymphocyte antigen CD22." Tuscano J.M., Engel P., Tedder T.F., Agarwal A., Kehrl J.H. Eur. J. Immunol. 26:1246-1252(1996) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH LYN; SYK AND PIK3R1/PIK3R2. |
| [10] | "CD22 associates with protein tyrosine phosphatase 1C, Syk, and phospholipase C-gamma(1) upon B cell activation." Law C.L., Sidorenko S.P., Chandran K.A., Zhao Z., Shen S.H., Fischer E.H., Clark E.A. J. Exp. Med. 183:547-560(1996) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH PTPN6; SYK AND PLCG1. |
| [11] | "CD22, a B lymphocyte-specific adhesion molecule that regulates antigen receptor signaling." Tedder T.F., Tuscano J., Sato S., Kehrl J.H. Annu. Rev. Immunol. 15:481-504(1997) [PubMed] [Europe PMC] [Abstract] Cited for: REVIEW. |
| + | Additional computationally mapped references. |
Web resources
| Functional Glycomics Gateway - Glycan Binding Siglec-2 [3 Fc Domains] |
| Functional Glycomics Gateway - Glycan Binding Siglec-2 |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | U62631 Genomic DNA. Translation: AAB06448.1. U62631 Genomic DNA. Translation: AAB06449.1. X59350 mRNA. Translation: CAA42006.1. X52785 mRNA. Translation: CAA36988.1. Frameshift. AK225625 mRNA. No translation available. AB012995 Genomic DNA. Translation: BAA36564.1. AB012996 Genomic DNA. Translation: BAA36565.1. AB012997 Genomic DNA. Translation: BAA36566.1. AB012998 Genomic DNA. Translation: BAA36567.1. AB012999 Genomic DNA. Translation: BAA36568.1. AB013000 Genomic DNA. Translation: BAA36569.1. AB013002 Genomic DNA. Translation: BAA36571.1. AB013003 Genomic DNA. Translation: BAA36572.1. AB013004 Genomic DNA. Translation: BAA36573.1. AB013006 Genomic DNA. Translation: BAA36575.1. |
| IPI | IPI00218390. IPI00295133. IPI00975891. |
| PIR | A35648. |
| RefSeq | NP_001172028.1. NM_001185099.1. NP_001172029.1. NM_001185100.1. NP_001172030.1. NM_001185101.1. NP_001762.2. NM_001771.3. |
| UniGene | Hs.579691. |
3D structure databases | |
| ProteinModelPortal | P20273. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | P20273. 6 interactions. |
Protein family/group databases | |
| MEROPS | I43.001. |
PTM databases | |
| PhosphoSite | P20273. |
Polymorphism databases | |
| DMDM | 6166019. |
Proteomic databases | |
| PaxDb | P20273. |
| PRIDE | P20273. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000085219; ENSP00000085219; ENSG00000012124. ENST00000341773; ENSP00000339349; ENSG00000012124. ENST00000536635; ENSP00000442279; ENSG00000012124. ENST00000594250; ENSP00000469984; ENSG00000012124. |
| GeneID | 933. |
| KEGG | hsa:933. |
| UCSC | uc002nzb.4. human. uc010edt.3. human. |
Organism-specific databases | |
| CTD | 933. |
| GeneCards | GC19P035820. |
| HGNC | HGNC:1643. CD22. |
| HPA | CAB002418. HPA024353. |
| MIM | 107266. gene. |
| neXtProt | NX_P20273. |
| PharmGKB | PA26201. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | NOG287433. |
| HOVERGEN | HBG005272. |
| InParanoid | P20273. |
| KO | K06467. |
| OMA | SGAYWCQ. |
| OrthoDB | EOG4C87RQ. |
Enzyme and pathway databases | |
| Pathway_Interaction_DB | bcr_5pathway. BCR signaling pathway. |
Gene expression databases | |
| ArrayExpress | P20273. |
| Bgee | P20273. |
| Genevestigator | P20273. |
| GermOnline | ENSG00000012124. Homo sapiens. |
Family and domain databases | |
| Gene3D | 2.60.40.10. 7 hits. |
| InterPro | IPR013162. CD80_C2-set. IPR007110. Ig-like_dom. IPR013783. Ig-like_fold. IPR003599. Ig_sub. IPR003598. Ig_sub2. IPR013151. Immunoglobulin. [Graphical view] |
| Pfam | PF08205. C2-set_2. 1 hit. PF00047. ig. 2 hits. [Graphical view] |
| SMART | SM00409. IG. 2 hits. SM00408. IGc2. 4 hits. [Graphical view] |
| PROSITE | PS50835. IG_LIKE. 6 hits. [Graphical view] |
| ProtoNet | Search... |
Other | |
| BindingDB | P20273. |
| ChEMBL | CHEMBL3218. |
| DrugBank | DB00045. OspA lipoprotein. |
| GenomeRNAi | 933. |
| NextBio | 3874. |
| SOURCE | Search... |
Entry information
| Entry name | CD22_HUMAN | ||||||||
| Accession | Primary (citable) accession number: P20273 Secondary accession number(s): F5H7U3 Q9Y2A6 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human cell differentiation molecules CD nomenclature of surface proteins of human leucocytes and list of entries |
| Human chromosome 19 Human chromosome 19: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
