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Protein

Protein F-93

Gene

f93

Organism
Sulfolobus spindle-shape virus 1 (SSV1)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Probable transcription factor that recognizes a (pseudo-)palindromic DNA target sequence.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Protein F-93
Gene namesi
ORF Names:f93
OrganismiSulfolobus spindle-shape virus 1 (SSV1)
Taxonomic identifieri244589 [NCBI]
Taxonomic lineageiVirusesdsDNA viruses, no RNA stageFuselloviridaeAlphafusellovirus
Virus hostiSulfolobus solfataricus [TaxID: 2287]
Proteomesi
  • UP000000854 Componenti: Genome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 9393Protein F-93PRO_0000223014Add
BLAST

Interactioni

Subunit structurei

Homodimer.1 Publication

Structurei

Secondary structure

1
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi5 – 73Combined sources
Helixi9 – 179Combined sources
Helixi25 – 339Combined sources
Helixi40 – 5213Combined sources
Beta strandi55 – 617Combined sources
Beta strandi64 – 696Combined sources
Helixi71 – 9323Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1TBXX-ray2.70A/B1-93[»]
ProteinModelPortaliP20222.
SMRiP20222. Positions 3-93.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP20222.

Family & Domainsi

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR011991. WHTH_DNA-bd_dom.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.

Sequencei

Sequence statusi: Complete.

P20222-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKSTPFFYPE AIVLAYLYDN EGIATYDLYK KVNAEFPMST ATFYDAKKFL
60 70 80 90
IQEGFVKERQ ERGEKRLYLT EKGKLFAISL KTAIETYKQI KKR
Length:93
Mass (Da):10,966
Last modified:February 1, 1991 - v1
Checksum:iFDA0840D7D79E333
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X07234 Genomic DNA. Translation: CAA30216.1.
PIRiS03217.
RefSeqiNP_039783.1. NC_001338.1.

Genome annotation databases

GeneIDi2559634.
KEGGivg:2559634.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X07234 Genomic DNA. Translation: CAA30216.1.
PIRiS03217.
RefSeqiNP_039783.1. NC_001338.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1TBXX-ray2.70A/B1-93[»]
ProteinModelPortaliP20222.
SMRiP20222. Positions 3-93.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi2559634.
KEGGivg:2559634.

Miscellaneous databases

EvolutionaryTraceiP20222.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR011991. WHTH_DNA-bd_dom.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete nucleotide sequence of the virus SSV1 of the archaebacterium Sulfolobus shibatae."
    Palm P., Schleper C., Grampp B., Yeats S., McWilliam P., Reiter W.-D., Zillig W.
    Virology 185:242-250(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Crystal structure of F-93 from Sulfolobus spindle-shaped virus 1, a winged-helix DNA binding protein."
    Kraft P., Oeckinghaus A., Kummel D., Gauss G.H., Gilmore J., Wiedenheft B., Young M., Lawrence C.M.
    J. Virol. 78:11544-11550(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.7 ANGSTROMS) OF 2-93, SUBUNIT, PUTATIVE FUNCTION.

Entry informationi

Entry nameiF93_SSV1
AccessioniPrimary (citable) accession number: P20222
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1991
Last sequence update: February 1, 1991
Last modified: December 9, 2015
This is version 69 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.