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P20126 (POLR_EPMV) Reviewed, UniProtKB/Swiss-Prot

Last modified September 21, 2011. Version 66. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length1839 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).

Sequence similarities

Belongs to the tymovirus NS35 RNA replicase polyprotein family.

Contains 1 RdRp catalytic domain.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 18391839RNA replicase polyprotein
PRO_0000222934

Regions

Domain1567 – 1673107RdRp catalytic
Nucleotide binding965 – 9728ATP By similarity

Sequences

Sequence LengthMass (Da)Tools
P20126 [UniParc].

Last modified February 1, 1996. Version 2.
Checksum: FD8DC1F5115E7861

FASTA1,839204,732
        10         20         30         40         50         60 
MAFQSALEAL NSTTHRDAST NPILNSVVEP LRDSLSLYPW LLPKEAVPHL LSWGIPNSGL 

        70         80         90        100        110        120 
GVTPHPHPIH KTVETFLLFN HWHALARLPS TVMFMKPSKF QKLAALNPKF QELINFRLTA 

       130        140        150        160        170        180 
ADTTRYPSTS LTFPSNSICF MHDALMYFSP AQIVDLFTQS PALETLYCSL IVPPESHFTD 

       190        200        210        220        230        240 
LSLFPEIYTY KISGQTLHYI PENHHSGSYN QPLQAPSWLK ISSILSPSLA LSVTKLESWG 

       250        260        270        280        290        300 
PVHSILIQRG LPPKPSLSAR PPVLPNQPPR ATTPNSQNQL LHQTSQLFFQ LQQPQLSLVS 

       310        320        330        340        350        360 
FRIPDCVELP QATFLRQPLR HRLVPTSVYN ALFTYTRAVR TLRTSDPAGF VRTQSNKPEH 

       370        380        390        400        410        420 
AWVTPNAWDN LQTLSVNAPH RPQVCYHFFS SPVARLKLHF AQHWRAYLLA LTPFLTTSPL 

       430        440        450        460        470        480 
LLPLFNFNTP FPLPRLLSLF RRSVSSPRLL HSILPSQLRG AAIPNRPLPL WVTKLHHFLD 

       490        500        510        520        530        540 
SHSLLPTPPI RPRIELQRLP LMSLIPKPKI VLPLLSLLLS SPTIYIHFFQ AQTPQQLHDN 

       550        560        570        580        590        600 
YHLHLHPSRF ELSWTLQSYH VTQAQSFLPL LLPAPTQAQA SNPAPRPPAF HAIPLPPQPS 

       610        620        630        640        650        660 
TSSSPPLQEP TLSPHLIHPP LTREPSPLNG CACDSALLPS TAAMTSAEHP TPLNPPTPSP 

       670        680        690        700        710        720 
TPDVPPPDSP GNPSLLKQVP PEANLHPIHN PDLPSSTTLP SGALTLVPAK TPSIYANPTP 

       730        740        750        760        770        780 
PSSHPFTPLA DDPTAVGPCL PFHVLHPADY FPLSAEFLTR TRHVPPSSLS HPKLNCLLTC 

       790        800        810        820        830        840 
FSELSGHSES DLWLSLQSIL PDSQLQNPEV STLGLSTDIL TALCFIYHSS VTLHAPSGVY 

       850        860        870        880        890        900 
HYGIASSSTV YVIHYQPGPP PHFSLSPRLA ASAPRCNPTN SRLVRQALRF KLNGEFLPFT 

       910        920        930        940        950        960 
QAYAHESSIT HAKNLISNMK NGFDGIMSSL TDSSKGPSPR EKLTTLDSLI DVAAPREVSL 

       970        980        990       1000       1010       1020 
IHIAGFAGCG KTHPIQKLLQ TSPFHDFRIS CPTNELRSEW KRDMQPTAEN VWRFSTWESS 

      1030       1040       1050       1060       1070       1080 
LLKHSEILVI DEIYKLPRGY LDLSILADPT LSLVIILGDP LQGEYHSTSP HSSNHFLPSE 

      1090       1100       1110       1120       1130       1140 
VHRFKSYIDC YCFWSHRIPK QIASLFGVVC HNTNEGFVRA LTSHPPNSKN LTNATNTALS 

      1150       1160       1170       1180       1190       1200 
LQQMGHHAIT ISARRVTFTE AHTILLDRHT NLLSPNNCLV ALTRSRTGVY FVGNLHLASN 

      1210       1220       1230       1240       1250       1260 
SFGTNYMFSQ ALCQGTIDLN NVFPHIMPHL PKMYEPIRSR SNRFVSGSLN FRPTTNSRLL 

      1270       1280       1290       1300       1310       1320 
SSLTKPTHLP PHIPTNHSLD VLVSNPVLLG ETLDPRLEVL HLPPTRLPLH LDLLPTVPSS 

      1330       1340       1350       1360       1370       1380 
SSFSSVDHLF PTPISPAICG YTFENLAAFF LPAHDPDLKE VLINDQKSNQ FPYLDAPFEL 

      1390       1400       1410       1420       1430       1440 
SCQPSSLLAP IHKPASDPTL LPGSIKKRLR FRASSSPYSI TPSDQLLGQH LFSSLCLAYG 

      1450       1460       1470       1480       1490       1500 
RNPNSVLPFQ PELFSECICI NDYAQLSSKT QATIVANHQR SDPDWRLTAV RIFAKAQHKV 

      1510       1520       1530       1540       1550       1560 
NDASIFSGWK ACQTLALMHG YIILVLGPVK KYQRIFDSKD RPPHIYYHCG KTPSQLSQWC 

      1570       1580       1590       1600       1610       1620 
QTHLSGSSYI ANDYTAFDQS QHGEAVVLEC LKMRRLSIPD SLIQLHSHLK CSVDTQFGPL 

      1630       1640       1650       1660       1670       1680 
TCMRLTGEPG TYDDNSDYNL AVIYSQYSLN GHPILISGDD SVLCGTPPPS PLWPTLKKML 

      1690       1700       1710       1720       1730       1740 
HLRFKIERTS HPLFCGYYVS PHGAARNPYA LFAKLMICVD DKSLHDKKLS YLSEFSTGHL 

      1750       1760       1770       1780       1790       1800 
AGDLVTSILP SHLLPYQSAV HDFFCRNCTP AEKILLSLDP IPESKILQLI LKVRWASQAF 

      1810       1820       1830 
FSYLPQKARE LLVARSSLPS LYSNPKVSQL ESELLPFSQ 

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References

[1]"Nucleotide sequence of the genome of eggplant mosaic tymovirus."
Osorio-Keese M.E., Keese P., Gibbs A.
Virology 172:547-554(1989) [PubMed: 2800336] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
J04374 Genomic RNA. Translation: AAA43039.1.
PIRRRWPEM. JQ0102.
RefSeqNP_040968.1. NC_001480.1.

3D structure databases

ProteinModelPortalP20126.
ModBaseSearch...

Protein family/group databases

MEROPSC21.001.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID1493960.

Family and domain databases

InterProIPR000606. Helicase_domain_viral-like.
IPR008043. Peptidase_C21.
IPR007094. RNA-dir_pol_PSvirus.
IPR002588. Tymovirus_MeTrfase.
IPR001788. Tymovirus_RNA-dep_RNA_pol.
[Graphical view]
PfamPF05381. Peptidase_C21. 1 hit.
PF00978. RdRP_2. 1 hit.
PF01443. Viral_helicase1. 1 hit.
PF01660. Vmethyltransf. 1 hit.
[Graphical view]
PROSITEPS50507. RDRP_SSRNA_POS. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry namePOLR_EPMV
AccessionPrimary (citable) accession number: P20126
Entry history
Integrated into UniProtKB/Swiss-Prot: February 1, 1991
Last sequence update: February 1, 1996
Last modified: September 21, 2011
This is version 66 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families