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Protein

Coat protein

Gene
N/A
Organism
Turnip yellow mosaic virus (isolate Australia)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Coat protein
Alternative name(s):
Virion protein
OrganismiTurnip yellow mosaic virus (isolate Australia)
Taxonomic identifieri12155 [NCBI]
Taxonomic lineageiVirusesssRNA virusesssRNA positive-strand viruses, no DNA stageTymoviralesTymoviridaeTymovirus
Virus hostiBrassica [TaxID: 3705]
Cardamine lilacina [TaxID: 82359]
Malva parviflora (Little mallow) (Cheeseweed mallow) [TaxID: 145753]
Proteomesi
  • UP000008268 Componenti: Genome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Capsid protein, T=3 icosahedral capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002229321 – 189Coat proteinAdd BLAST189

Interactioni

Subunit structurei

The virus coat is composed of 180 copies of the coat protein arranged in a icosahedral shell.

Structurei

Secondary structure

1189
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi24 – 26Combined sources3
Beta strandi30 – 45Combined sources16
Beta strandi47 – 52Combined sources6
Helixi53 – 55Combined sources3
Helixi57 – 63Combined sources7
Beta strandi66 – 80Combined sources15
Turni82 – 86Combined sources5
Beta strandi90 – 97Combined sources8
Helixi104 – 109Combined sources6
Beta strandi110 – 112Combined sources3
Beta strandi114 – 116Combined sources3
Beta strandi119 – 122Combined sources4
Beta strandi129 – 131Combined sources3
Helixi134 – 136Combined sources3
Beta strandi140 – 145Combined sources6
Beta strandi150 – 158Combined sources9
Beta strandi169 – 182Combined sources14

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2FZ1X-ray2.90A/B/C1-189[»]
2FZ2X-ray2.90A/B/C1-189[»]
ProteinModelPortaliP20125.
SMRiP20125.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP20125.

Family & Domainsi

Sequence similaritiesi

Belongs to the tymoviruses coat protein family.Curated

Family and domain databases

Gene3Di2.60.120.20. 1 hit.
InterProiIPR000574. Tymo_coat.
IPR029053. Viral_coat.
[Graphical view]
PfamiPF00983. Tymo_coat. 1 hit.
[Graphical view]
ProDomiPD003886. Tymo_coat. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

P20125-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEIDKELAPQ DRTVTVATVL PTVPGPSPFT IKQPFQSEVL FAGTKDAEAS
60 70 80 90 100
LTIANIDSVS TLTTFYRHAS LESLWVTIHP TLQAPAFPTT VGVCWVPANS
110 120 130 140 150
PVTPTQITKT YGGQIFCIGG AINTLSPLIV KCPLEMMNPR VKDSIQYLDS
160 170 180
PKLLISITAQ PTAPPASTCI ITVSGTLSMH SPLITDTST
Length:189
Mass (Da):20,152
Last modified:February 1, 1991 - v1
Checksum:i923E7C25DA8FFA08
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
J04373 Genomic RNA. Translation: AAA46593.1.
PIRiJQ0111. VCWPTM.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
J04373 Genomic RNA. Translation: AAA46593.1.
PIRiJQ0111. VCWPTM.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2FZ1X-ray2.90A/B/C1-189[»]
2FZ2X-ray2.90A/B/C1-189[»]
ProteinModelPortaliP20125.
SMRiP20125.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Miscellaneous databases

EvolutionaryTraceiP20125.

Family and domain databases

Gene3Di2.60.120.20. 1 hit.
InterProiIPR000574. Tymo_coat.
IPR029053. Viral_coat.
[Graphical view]
PfamiPF00983. Tymo_coat. 1 hit.
[Graphical view]
ProDomiPD003886. Tymo_coat. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetiSearch...

Entry informationi

Entry nameiCOAT_TYMVA
AccessioniPrimary (citable) accession number: P20125
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1991
Last sequence update: February 1, 1991
Last modified: November 2, 2016
This is version 62 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.