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Protein

Coat protein

Gene
N/A
Organism
Turnip yellow mosaic virus (isolate Australia)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Coat protein
Alternative name(s):
Virion protein
OrganismiTurnip yellow mosaic virus (isolate Australia)
Taxonomic identifieri12155 [NCBI]
Taxonomic lineageiVirusesssRNA virusesssRNA positive-strand viruses, no DNA stageTymoviralesTymoviridaeTymovirus
Virus hostiBrassica [TaxID: 3705]
Cardamine lilacina [TaxID: 82359]
Malva parviflora (Little mallow) (Cheeseweed mallow) [TaxID: 145753]
Proteomesi
  • UP000008268 Componenti: Genome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Capsid protein, T=3 icosahedral capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 189189Coat proteinPRO_0000222932Add
BLAST

Interactioni

Subunit structurei

The virus coat is composed of 180 copies of the coat protein arranged in a icosahedral shell.

Structurei

Secondary structure

1
189
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi24 – 263Combined sources
Beta strandi30 – 4516Combined sources
Beta strandi47 – 526Combined sources
Helixi53 – 553Combined sources
Helixi57 – 637Combined sources
Beta strandi66 – 8015Combined sources
Turni82 – 865Combined sources
Beta strandi90 – 978Combined sources
Helixi104 – 1096Combined sources
Beta strandi110 – 1123Combined sources
Beta strandi114 – 1163Combined sources
Beta strandi119 – 1224Combined sources
Beta strandi129 – 1313Combined sources
Helixi134 – 1363Combined sources
Beta strandi140 – 1456Combined sources
Beta strandi150 – 1589Combined sources
Beta strandi169 – 18214Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2FZ1X-ray2.90A/B/C1-189[»]
2FZ2X-ray2.90A/B/C1-189[»]
ProteinModelPortaliP20125.
SMRiP20125. Positions 1-189.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP20125.

Family & Domainsi

Sequence similaritiesi

Belongs to the tymoviruses coat protein family.Curated

Family and domain databases

Gene3Di2.60.120.20. 1 hit.
InterProiIPR000574. Tymo_coat.
IPR029053. Viral_coat.
[Graphical view]
PfamiPF00983. Tymo_coat. 1 hit.
[Graphical view]
ProDomiPD003886. Tymo_coat. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

P20125-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEIDKELAPQ DRTVTVATVL PTVPGPSPFT IKQPFQSEVL FAGTKDAEAS
60 70 80 90 100
LTIANIDSVS TLTTFYRHAS LESLWVTIHP TLQAPAFPTT VGVCWVPANS
110 120 130 140 150
PVTPTQITKT YGGQIFCIGG AINTLSPLIV KCPLEMMNPR VKDSIQYLDS
160 170 180
PKLLISITAQ PTAPPASTCI ITVSGTLSMH SPLITDTST
Length:189
Mass (Da):20,152
Last modified:February 1, 1991 - v1
Checksum:i923E7C25DA8FFA08
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
J04373 Genomic RNA. Translation: AAA46593.1.
PIRiJQ0111. VCWPTM.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
J04373 Genomic RNA. Translation: AAA46593.1.
PIRiJQ0111. VCWPTM.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2FZ1X-ray2.90A/B/C1-189[»]
2FZ2X-ray2.90A/B/C1-189[»]
ProteinModelPortaliP20125.
SMRiP20125. Positions 1-189.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Miscellaneous databases

EvolutionaryTraceiP20125.

Family and domain databases

Gene3Di2.60.120.20. 1 hit.
InterProiIPR000574. Tymo_coat.
IPR029053. Viral_coat.
[Graphical view]
PfamiPF00983. Tymo_coat. 1 hit.
[Graphical view]
ProDomiPD003886. Tymo_coat. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetiSearch...

Entry informationi

Entry nameiCOAT_TYMVA
AccessioniPrimary (citable) accession number: P20125
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1991
Last sequence update: February 1, 1991
Last modified: October 14, 2015
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.