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Protein

37S ribosomal protein YMR-31, mitochondrial

Gene

YMR31

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • structural constituent of ribosome Source: SGD

GO - Biological processi

  • 2-oxoglutarate metabolic process Source: SGD
  • mitochondrial translation Source: SGD
  • tricarboxylic acid cycle Source: SGD
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciYEAST:G3O-30495-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
37S ribosomal protein YMR-31, mitochondrial
Gene namesi
Name:YMR31
Ordered Locus Names:YFR049W
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
ProteomesiUP000002311 Componenti: Chromosome VI

Organism-specific databases

CYGDiYFR049w.
EuPathDBiFungiDB:YFR049W.
SGDiS000001945. YMR31.

Subcellular locationi

GO - Cellular componenti

  • mitochondrial oxoglutarate dehydrogenase complex Source: SGD
  • mitochondrial ribosome Source: SGD
  • mitochondrial small ribosomal subunit Source: SGD
Complete GO annotation...

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transit peptidei1 – 88Mitochondrion1 Publication
Chaini9 – 12311537S ribosomal protein YMR-31, mitochondrialPRO_0000030587Add
BLAST

Proteomic databases

MaxQBiP19955.
PaxDbiP19955.
PeptideAtlasiP19955.

Interactioni

Subunit structurei

Component of the mitochondrial small ribosomal subunit. Mature mitochondrial ribosomes consist of a small (37S) and a large (54S) subunit. The 37S subunit contains at least 33 different proteins and 1 molecule of RNA (15S). The 54S subunit contains at least 45 different proteins and 1 molecule of RNA (21S).1 Publication

Binary interactionsi

WithEntry#Exp.IntActNotes
KGD2P192623EBI-16295,EBI-12464

Protein-protein interaction databases

BioGridi31207. 25 interactions.
DIPiDIP-5447N.
IntActiP19955. 8 interactions.
MINTiMINT-484612.

Structurei

3D structure databases

ProteinModelPortaliP19955.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transit peptide

Phylogenomic databases

eggNOGiNOG46721.
HOGENOMiHOG000182011.
InParanoidiP19955.
KOiK17417.
OMAiAYEPMIK.
OrthoDBiEOG7JHMK1.

Family and domain databases

InterProiIPR020373. Ribosomal_S36_mt.
[Graphical view]
PfamiPF10937. DUF2638. 1 hit.
[Graphical view]
ProDomiPD078011. Ribosomal_YMR-31_mt. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P19955-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIATPIRLAK SAYEPMIKFV GTRHPLVKHA TEVVVHPCAT NGMLPGSKEC
60 70 80 90 100
IPVSKFMENY KPFRVVPIKH SANAGLSSSK TSVFVNRPLQ KDELASIFEL
110 120
PARFRYKPIN EHELESINSG GAW
Length:123
Mass (Da):13,689
Last modified:February 1, 1991 - v1
Checksum:i25E491375CE7A137
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X17540 Genomic DNA. Translation: CAA35577.1.
D50617 Genomic DNA. Translation: BAA09288.1.
AY558475 Genomic DNA. Translation: AAS56801.1.
BK006940 Genomic DNA. Translation: DAA12492.1.
PIRiJQ0368.
RefSeqiNP_116707.3. NM_001180014.3.

Genome annotation databases

EnsemblFungiiYFR049W; YFR049W; YFR049W.
GeneIDi850610.
KEGGisce:YFR049W.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X17540 Genomic DNA. Translation: CAA35577.1.
D50617 Genomic DNA. Translation: BAA09288.1.
AY558475 Genomic DNA. Translation: AAS56801.1.
BK006940 Genomic DNA. Translation: DAA12492.1.
PIRiJQ0368.
RefSeqiNP_116707.3. NM_001180014.3.

3D structure databases

ProteinModelPortaliP19955.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi31207. 25 interactions.
DIPiDIP-5447N.
IntActiP19955. 8 interactions.
MINTiMINT-484612.

Proteomic databases

MaxQBiP19955.
PaxDbiP19955.
PeptideAtlasiP19955.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiYFR049W; YFR049W; YFR049W.
GeneIDi850610.
KEGGisce:YFR049W.

Organism-specific databases

CYGDiYFR049w.
EuPathDBiFungiDB:YFR049W.
SGDiS000001945. YMR31.

Phylogenomic databases

eggNOGiNOG46721.
HOGENOMiHOG000182011.
InParanoidiP19955.
KOiK17417.
OMAiAYEPMIK.
OrthoDBiEOG7JHMK1.

Enzyme and pathway databases

BioCyciYEAST:G3O-30495-MONOMER.

Miscellaneous databases

NextBioi966496.
PROiP19955.

Family and domain databases

InterProiIPR020373. Ribosomal_S36_mt.
[Graphical view]
PfamiPF10937. DUF2638. 1 hit.
[Graphical view]
ProDomiPD078011. Ribosomal_YMR-31_mt. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Cloning and analysis of the nuclear genes for two mitochondrial ribosomal proteins in yeast."
    Matsushita Y., Kitakawa M., Isono K.
    Mol. Gen. Genet. 219:119-124(1989) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], PROTEIN SEQUENCE OF 9-32, SUBUNIT.
    Strain: ATCC 64665 / S288c / DC5.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  3. Cited for: GENOME REANNOTATION.
    Strain: ATCC 204508 / S288c.
  4. "Analysis of a 36.2 kb DNA sequence including the right telomere of chromosome VI from Saccharomyces cerevisiae."
    Eki T., Naitou M., Hagiwara H., Ozawa M., Sasanuma S., Sasanuma M., Tsuchiya Y., Shibata T., Hanaoka F., Murakami Y.
    Yeast 12:149-167(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: ATCC 204511 / S288c / AB972.
  5. Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  6. Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
  7. Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
  8. Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
    Strain: ATCC 76625 / YPH499.

Entry informationi

Entry nameiRT31_YEAST
AccessioniPrimary (citable) accession number: P19955
Secondary accession number(s): D6VTT2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1991
Last sequence update: February 1, 1991
Last modified: July 22, 2015
This is version 124 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 2050 molecules/cell in log phase SD medium.1 Publication

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  2. Yeast chromosome VI
    Yeast (Saccharomyces cerevisiae) chromosome VI: entries and gene names

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.