P19955 (RT31_YEAST) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
37S ribosomal protein YMR-31, mitochondrial

Gene names

Name:	YMR31
Ordered Locus Names:	YFR049W

Organism

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) [Reference proteome]

Taxonomic identifier

559292 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Fungi › Dikarya › Ascomycota › saccharomyceta › Saccharomycotina › Saccharomycetes › Saccharomycetales › Saccharomycetaceae › Saccharomyces › Saccharomyces cerevisiae

Protein attributes

Sequence length	123 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Evidence at protein level

General annotation (Comments)

Subunit structure	Component of the mitochondrial small ribosomal subunit. Mature mitochondrial ribosomes consist of a small (37S) and a large (54S) subunit. The 37S subunit contains at least 33 different proteins and 1 molecule of RNA (15S). The 54S subunit contains at least 45 different proteins and 1 molecule of RNA (21S). Ref.1
Subcellular location	Mitochondrion Ref.6 Ref.8.
Miscellaneous	Present with 2050 molecules/cell in log phase SD medium.

Ontologies

Keywords
Cellular component	Mitochondrion
Domain	Transit peptide
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome Direct protein sequencing Reference proteome
Gene Ontology (GO)
Biological_process	cytoplasmic translation Traceable author statement PubMed 9445368. Source: SGD
Cellular_component	mitochondrial small ribosomal subunit Traceable author statement PubMed 9445368. Source: SGD
Molecular_function	structural constituent of ribosome Traceable author statement PubMed 9445368. Source: SGD
Complete GO annotation...

Binary interactions

With	Entry	#Exp.	IntAct	Notes
KGD2	P19262	3	EBI-16295,EBI-12464

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Transit peptide	1 – 8	8	Mitochondrion Ref.1
	Chain	9 – 123	115	37S ribosomal protein YMR-31, mitochondrial		PRO_0000030587

Sequences

	Sequence		Length	Mass (Da)
	P19955 [UniParc]. Last modified February 1, 1991. Version 1. Checksum: 25E491375CE7A137	FASTA	123	13,689
	10 20 30 40 50 60 MIATPIRLAK SAYEPMIKFV GTRHPLVKHA TEVVVHPCAT NGMLPGSKEC IPVSKFMENY 70 80 90 100 110 120 KPFRVVPIKH SANAGLSSSK TSVFVNRPLQ KDELASIFEL PARFRYKPIN EHELESINSG GAW

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Cloning and analysis of the nuclear genes for two mitochondrial ribosomal proteins in yeast." Matsushita Y., Kitakawa M., Isono K. Mol. Gen. Genet. 219:119-124(1989) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], PROTEIN SEQUENCE OF 9-32, SUBUNIT. Strain: ATCC 64665 / S288c / DC5.
[2]	"Analysis of the nucleotide sequence of chromosome VI from Saccharomyces cerevisiae." Murakami Y., Naitou M., Hagiwara H., Shibata T., Ozawa M., Sasanuma S., Sasanuma M., Tsuchiya Y., Soeda E., Yokoyama K., Yamazaki M., Tashiro H., Eki T. Nat. Genet. 10:261-268(1995) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 204511 / S288c / AB972.
[3]	Saccharomyces Genome Database Submitted (DEC-2009) to the EMBL/GenBank/DDBJ databases Cited for: GENOME REANNOTATION. Strain: ATCC 204508 / S288c.
[4]	"Analysis of a 36.2 kb DNA sequence including the right telomere of chromosome VI from Saccharomyces cerevisiae." Eki T., Naitou M., Hagiwara H., Ozawa M., Sasanuma S., Sasanuma M., Tsuchiya Y., Shibata T., Hanaoka F., Murakami Y. Yeast 12:149-167(1996) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. Strain: ATCC 204511 / S288c / AB972.
[5]	"Approaching a complete repository of sequence-verified protein-encoding clones for Saccharomyces cerevisiae." Hu Y., Rolfs A., Bhullar B., Murthy T.V.S., Zhu C., Berger M.F., Camargo A.A., Kelley F., McCarron S., Jepson D., Richardson A., Raphael J., Moreira D., Taycher E., Zuo D., Mohr S., Kane M.F., Williamson J. , Simpson A.J.G., Bulyk M.L., Harlow E., Marsischky G., Kolodner R.D., LaBaer J. Genome Res. 17:536-543(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. Strain: ATCC 204508 / S288c.
[6]	"Global analysis of protein localization in budding yeast." Huh W.-K., Falvo J.V., Gerke L.C., Carroll A.S., Howson R.W., Weissman J.S., O'Shea E.K. Nature 425:686-691(2003) [PubMed] [Europe PMC] [Abstract] Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
[7]	"Global analysis of protein expression in yeast." Ghaemmaghami S., Huh W.-K., Bower K., Howson R.W., Belle A., Dephoure N., O'Shea E.K., Weissman J.S. Nature 425:737-741(2003) [PubMed] [Europe PMC] [Abstract] Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
[8]	"The proteome of Saccharomyces cerevisiae mitochondria." Sickmann A., Reinders J., Wagner Y., Joppich C., Zahedi R.P., Meyer H.E., Schoenfisch B., Perschil I., Chacinska A., Guiard B., Rehling P., Pfanner N., Meisinger C. Proc. Natl. Acad. Sci. U.S.A. 100:13207-13212(2003) [PubMed] [Europe PMC] [Abstract] Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS], MASS SPECTROMETRY. Strain: ATCC 76625 / YPH499.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	X17540 Genomic DNA. Translation: CAA35577.1. D50617 Genomic DNA. Translation: BAA09288.1. AY558475 Genomic DNA. Translation: AAS56801.1. BK006940 Genomic DNA. Translation: DAA12492.1.
PIR	JQ0368.
RefSeq	NP_116707.3. NM_001180014.3.
3D structure databases
ProteinModelPortal	P19955.
ModBase	Search...
Protein-protein interaction databases
DIP	DIP-5447N.
IntAct	P19955. 8 interactions.
MINT	MINT-484612.
STRING	4932.YFR049W.
Proteomic databases
PaxDb	P19955.
PeptideAtlas	P19955.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblFungi	YFR049W; YFR049W; YFR049W.
GeneID	850610.
KEGG	sce:YFR049W. sce:YFR051C.
Organism-specific databases
CYGD	YFR049w.
SGD	S000001945. YMR31.
Phylogenomic databases
eggNOG	NOG46721.
HOGENOM	HOG000182011.
OMA	AYEPMIK.
OrthoDB	EOG4VT971.
Gene expression databases
Genevestigator	P19955.
GermOnline	YFR049W. Saccharomyces cerevisiae.
Family and domain databases
InterPro	IPR020373. Ribosomal_S36_mt. [Graphical view]
Pfam	PF10937. DUF2638. 1 hit. [Graphical view]
ProDom	PD078011. Ribosomal_YMR-31_mt. 1 hit. [Graphical view] [Entries sharing at least one domain]
ProtoNet	Search...
Other
NextBio	966496.

Entry information

Entry name

RT31_YEAST

Accession

Primary (citable) accession number: P19955
Secondary accession number(s): D6VTT2

Entry history

Integrated into UniProtKB/Swiss-Prot:	February 1, 1991
Last sequence update:	February 1, 1991
Last modified:	April 3, 2013
This is version 106 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Fungal Protein Annotation Program