P19128 (COAT_CAYMV) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names	Recommended name: Coat protein Alternative name(s): Virion protein
Organism	Cacao yellow mosaic virus
Taxonomic identifier	12150 [NCBI]
Taxonomic lineage	Viruses › ssRNA positive-strand viruses, no DNA stage › Tymovirales › Tymoviridae › Tymovirus
Virus host	Theobroma cacao (Cacao) (Cocoa) [TaxID: 3641]

Protein attributes

Sequence length	188 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Subunit structure	The virus coat is composed of 180 copies of the coat protein arranged in a icosahedral shell.
Subcellular location	Virion Potential.
Sequence similarities	Belongs to the tymoviruses coat protein family.

Ontologies

Keywords
Cellular component	Virion
Molecular function	Capsid protein T=3 icosahedral capsid protein
Gene Ontology (GO)
Cellular component	viral capsid Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	structural molecule activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 188	188	Coat protein		PRO_0000222926

Sequences

	Sequence		Length	Mass (Da)
	P19128 [UniParc]. Last modified November 1, 1990. Version 1. Checksum: 24CBF7F2BF9DAB37	FASTA	188	19,788
	10 20 30 40 50 60 MSSDLILAPQ PLINTKASEL PSQSGSPPPE IVYPFQFTIA SLGVEPTADF VSIAAQAAIT 70 80 90 100 110 120 AYTSLYRHAI LTDLQAIIHP NGYAPAFPTS VALAWVPYNS TATAAKILDV FGGQEFCVGG 130 140 150 160 170 180 SINSTSPIIV PCPLTNINPI IKDSVTYTDT PKLLIYSTAP SYSTSATCTL TIRGKVRLHS PLLSSSSS

References

[1]	"Nucleotide sequence of the virion protein gene of cacao yellow mosaic tymovirus." Ding S.W., Mackenzie A., Torronen M., Gibbs A. Nucleic Acids Res. 18:5886-5886(1990) [PubMed: 2216783] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	X54354 Genomic RNA. Translation: CAA38239.1.
PIR	S11490.
3D structure databases
ProteinModelPortal	P19128.
SMR	P19128. Positions 14-187.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Family and domain databases
InterPro	IPR000574. Tymo_coat. [Graphical view]
Pfam	PF00983. Tymo_coat. 1 hit. [Graphical view]
ProDom	PD003886. Tymo_coat. 1 hit. [Graphical view] [Entries sharing at least one domain]
ProtoNet	Search...

Entry information

Entry name

COAT_CAYMV

Accession

Primary (citable) accession number: P19128

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 1, 1990
Last sequence update:	November 1, 1990
Last modified:	May 31, 2011
This is version 46 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Viral Protein Annotation Program