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P19060

- BP06_BPT4

UniProt

P19060 - BP06_BPT4

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Protein

Base plate structural protein gp6

Gene

6

Organism
Enterobacteria phage T4 (Bacteriophage T4)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli

Functioni

Structural component of the baseplate. The baseplate is a multicomponent protein complex which controls phage attachment to the host. During infection, the baseplate undergoes a conformational change from a dome-shaped to a star-shaped structure.

Protein family/group databases

TCDBi1.K.1.1.1. the gp27/5 t4-baseplate (t4-bp) family.

Names & Taxonomyi

Protein namesi
Recommended name:
Base plate structural protein gp6
Alternative name(s):
Base plate wedge protein 6
Gene product 6
Short name:
gp6
Gene namesi
Name:6
OrganismiEnterobacteria phage T4 (Bacteriophage T4)
Taxonomic identifieri10665 [NCBI]
Taxonomic lineageiVirusesdsDNA viruses, no RNA stageCaudoviralesMyoviridaeTevenvirinaeT4likevirus
Virus hostiEscherichia coli [TaxID: 562]
ProteomesiUP000009087: Genome

Subcellular locationi

GO - Cellular componenti

  1. virion Source: CACAO
Complete GO annotation...

Keywords - Cellular componenti

Viral baseplate protein, Viral tail protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 660660Base plate structural protein gp6PRO_0000164996Add
BLAST

Interactioni

Subunit structurei

Six gp6 dimers form a ring that maintains the integrity of the baseplate. The baseplate wedge of bacteriophage T4 consists of seven gene products namely, gp11, gp10, gp7, gp8, gp6, gp53, and gp25 which assemble in this order.1 Publication

Protein-protein interaction databases

DIPiDIP-48306N.

Structurei

Secondary structure

1
660
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi342 – 35211Combined sources
Turni353 – 3553Combined sources
Beta strandi359 – 3646Combined sources
Beta strandi371 – 3777Combined sources
Beta strandi379 – 3824Combined sources
Turni384 – 3885Combined sources
Beta strandi389 – 3913Combined sources
Helixi393 – 3964Combined sources
Beta strandi403 – 4097Combined sources
Beta strandi412 – 42514Combined sources
Turni426 – 4283Combined sources
Helixi433 – 45119Combined sources
Helixi461 – 4699Combined sources
Beta strandi477 – 4793Combined sources
Beta strandi482 – 4898Combined sources
Beta strandi515 – 5184Combined sources
Beta strandi535 – 5428Combined sources
Beta strandi549 – 5568Combined sources
Turni560 – 5623Combined sources
Beta strandi590 – 5967Combined sources
Turni597 – 6004Combined sources
Beta strandi601 – 6055Combined sources
Helixi606 – 6083Combined sources
Helixi613 – 6153Combined sources
Beta strandi621 – 6255Combined sources
Beta strandi630 – 6334Combined sources
Beta strandi636 – 6405Combined sources
Turni644 – 6463Combined sources
Beta strandi650 – 6534Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3H2TX-ray3.20A/B334-660[»]
3H3Welectron microscopy12.00A/B/C/D/E/F/G/H/I/J/K/L334-660[»]
3H3Yelectron microscopy16.00A/B/C/D/E/F/G/H/I/J/K/L334-660[»]
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP19060.

Sequencei

Sequence statusi: Complete.

P19060-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MANTPVNYQL TRTANAIPEI FVGGTFAEIK QNLIEWLNGQ NEFLDYDFEG
60 70 80 90 100
SRLNVLCDLL AYNTLYIQQF GNAAVYESFM RTANLRSSVV QAAQDNGYLP
110 120 130 140 150
TSKSAAQTEI MLTCTDALNR NYITIPRGTR FLAYAKDTSV NPYNFVSRED
160 170 180 190 200
VIAIRDKNNQ YFPRLKLAQG RIVRTEIIYD KLTPIIIYDK NIDRNQVKLY
210 220 230 240 250
VDGAEWINWT RKSMVHAGST STIYYMRETI DGNTEFYFGE GEISVNASEG
260 270 280 290 300
ALTANYIGGL KPTQNSTIVI EYISTNGADA NGAVGFSYAD TLTNITVINI
310 320 330 340 350
NENPNDDPDF VGADGGGDPE DIERIRELGT IKRETQQRCV TATDYDTFVS
360 370 380 390 400
ERFGSIIQAV QTFTDSTKPG YAFIAAKPKS GLYLTTVQRE DIKNYLKDYN
410 420 430 440 450
LAPITPSIIS PNYLFIKTNL KVTYALNKLQ ESEQWLEGQI IDKIDRYYTE
460 470 480 490 500
DVEIFNSSFA KSKMLTYVDD ADHSVIGSSA TIQMVREVQN FYKTPEAGIK
510 520 530 540 550
YNNQIKDRSM ESNTFSFNSG RKVVNPDTGL EEDVLYDVRI VSTDRDSKGI
560 570 580 590 600
GKVIIGPFAS GDVTENENIQ PYTGNDFNKL ANSDGRDKYY VIGEINYPAD
610 620 630 640 650
VIYWNIAKIN LTSEKFEVQT IELYSDPTDD VIFTRDGSLI VFENDLRPQY
660
LTIDLEPISQ
Length:660
Mass (Da):74,429
Last modified:November 1, 1990 - v1
Checksum:iDD233D4F26A7C1BF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X15907 Genomic DNA. Translation: CAA34021.1.
AF158101 Genomic DNA. Translation: AAD42505.1.
PIRiJQ0656. G6BPT4.
RefSeqiNP_049764.1. NC_000866.4.

Genome annotation databases

GeneIDi1258662.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X15907 Genomic DNA. Translation: CAA34021.1 .
AF158101 Genomic DNA. Translation: AAD42505.1 .
PIRi JQ0656. G6BPT4.
RefSeqi NP_049764.1. NC_000866.4.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
3H2T X-ray 3.20 A/B 334-660 [» ]
3H3W electron microscopy 12.00 A/B/C/D/E/F/G/H/I/J/K/L 334-660 [» ]
3H3Y electron microscopy 16.00 A/B/C/D/E/F/G/H/I/J/K/L 334-660 [» ]
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

DIPi DIP-48306N.

Protein family/group databases

TCDBi 1.K.1.1.1. the gp27/5 t4-baseplate (t4-bp) family.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 1258662.

Miscellaneous databases

EvolutionaryTracei P19060.

Family and domain databases

ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Nucleotide sequences of bacteriophage T4 genes 6, 7 and 8."
    Efimov V.P., Prilipov A.G., Mesyanzhinov V.V.
    Nucleic Acids Res. 18:5313-5313(1990) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: D.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  3. "Structure of the bacteriophage T4 baseplate as determined by chemical cross-linking."
    Watts N.R., Coombs D.H.
    J. Virol. 64:143-154(1990) [PubMed] [Europe PMC] [Abstract]
    Cited for: SUBUNIT.
  4. "The structure of gene product 6 of bacteriophage T4, the hinge-pin of the baseplate."
    Aksyuk A.A., Leiman P.G., Shneider M.M., Mesyanzhinov V.V., Rossmann M.G.
    Structure 17:800-808(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.2 ANGSTROMS) OF 334-660.

Entry informationi

Entry nameiBP06_BPT4
AccessioniPrimary (citable) accession number: P19060
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1990
Last sequence update: November 1, 1990
Last modified: November 26, 2014
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

External Data

Dasty 3