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P19060

- BP06_BPT4

UniProt

P19060 - BP06_BPT4

Protein

Base plate structural protein gp6

Gene

6

Organism
Enterobacteria phage T4 (Bacteriophage T4)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 60 (01 Oct 2014)
      Sequence version 1 (01 Nov 1990)
      Previous versions | rss
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    Functioni

    Structural component of the baseplate. The baseplate is a multicomponent protein complex which controls phage attachment to the host. During infection, the baseplate undergoes a conformational change from a dome-shaped to a star-shaped structure.

    Protein family/group databases

    TCDBi1.K.1.1.1. the gp27/5 t4-baseplate (t4-bp) family.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Base plate structural protein gp6
    Alternative name(s):
    Base plate wedge protein 6
    Gene product 6
    Short name:
    gp6
    Gene namesi
    Name:6
    OrganismiEnterobacteria phage T4 (Bacteriophage T4)
    Taxonomic identifieri10665 [NCBI]
    Taxonomic lineageiVirusesdsDNA viruses, no RNA stageCaudoviralesMyoviridaeTevenvirinaeT4likevirus
    Virus hostiEscherichia coli [TaxID: 562]
    ProteomesiUP000009087: Genome

    Subcellular locationi

    GO - Cellular componenti

    1. virion Source: CACAO

    Keywords - Cellular componenti

    Viral baseplate protein, Viral tail protein, Virion

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 660660Base plate structural protein gp6PRO_0000164996Add
    BLAST

    Interactioni

    Subunit structurei

    Six gp6 dimers form a ring that maintains the integrity of the baseplate. The baseplate wedge of bacteriophage T4 consists of seven gene products namely, gp11, gp10, gp7, gp8, gp6, gp53, and gp25 which assemble in this order.1 Publication

    Protein-protein interaction databases

    DIPiDIP-48306N.

    Structurei

    Secondary structure

    1
    660
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Helixi342 – 35211
    Turni353 – 3553
    Beta strandi359 – 3646
    Beta strandi371 – 3777
    Beta strandi379 – 3824
    Turni384 – 3885
    Beta strandi389 – 3913
    Helixi393 – 3964
    Beta strandi403 – 4097
    Beta strandi412 – 42514
    Turni426 – 4283
    Helixi433 – 45119
    Helixi461 – 4699
    Beta strandi477 – 4793
    Beta strandi482 – 4898
    Beta strandi515 – 5184
    Beta strandi535 – 5428
    Beta strandi549 – 5568
    Turni560 – 5623
    Beta strandi590 – 5967
    Turni597 – 6004
    Beta strandi601 – 6055
    Helixi606 – 6083
    Helixi613 – 6153
    Beta strandi621 – 6255
    Beta strandi630 – 6334
    Beta strandi636 – 6405
    Turni644 – 6463
    Beta strandi650 – 6534

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    3H2TX-ray3.20A/B334-660[»]
    3H3Welectron microscopy12.00A/B/C/D/E/F/G/H/I/J/K/L334-660[»]
    3H3Yelectron microscopy16.00A/B/C/D/E/F/G/H/I/J/K/L334-660[»]
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiP19060.

    Sequencei

    Sequence statusi: Complete.

    P19060-1 [UniParc]FASTAAdd to Basket

    « Hide

    MANTPVNYQL TRTANAIPEI FVGGTFAEIK QNLIEWLNGQ NEFLDYDFEG    50
    SRLNVLCDLL AYNTLYIQQF GNAAVYESFM RTANLRSSVV QAAQDNGYLP 100
    TSKSAAQTEI MLTCTDALNR NYITIPRGTR FLAYAKDTSV NPYNFVSRED 150
    VIAIRDKNNQ YFPRLKLAQG RIVRTEIIYD KLTPIIIYDK NIDRNQVKLY 200
    VDGAEWINWT RKSMVHAGST STIYYMRETI DGNTEFYFGE GEISVNASEG 250
    ALTANYIGGL KPTQNSTIVI EYISTNGADA NGAVGFSYAD TLTNITVINI 300
    NENPNDDPDF VGADGGGDPE DIERIRELGT IKRETQQRCV TATDYDTFVS 350
    ERFGSIIQAV QTFTDSTKPG YAFIAAKPKS GLYLTTVQRE DIKNYLKDYN 400
    LAPITPSIIS PNYLFIKTNL KVTYALNKLQ ESEQWLEGQI IDKIDRYYTE 450
    DVEIFNSSFA KSKMLTYVDD ADHSVIGSSA TIQMVREVQN FYKTPEAGIK 500
    YNNQIKDRSM ESNTFSFNSG RKVVNPDTGL EEDVLYDVRI VSTDRDSKGI 550
    GKVIIGPFAS GDVTENENIQ PYTGNDFNKL ANSDGRDKYY VIGEINYPAD 600
    VIYWNIAKIN LTSEKFEVQT IELYSDPTDD VIFTRDGSLI VFENDLRPQY 650
    LTIDLEPISQ 660
    Length:660
    Mass (Da):74,429
    Last modified:November 1, 1990 - v1
    Checksum:iDD233D4F26A7C1BF
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X15907 Genomic DNA. Translation: CAA34021.1.
    AF158101 Genomic DNA. Translation: AAD42505.1.
    PIRiJQ0656. G6BPT4.
    RefSeqiNP_049764.1. NC_000866.4.

    Genome annotation databases

    GeneIDi1258662.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X15907 Genomic DNA. Translation: CAA34021.1 .
    AF158101 Genomic DNA. Translation: AAD42505.1 .
    PIRi JQ0656. G6BPT4.
    RefSeqi NP_049764.1. NC_000866.4.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    3H2T X-ray 3.20 A/B 334-660 [» ]
    3H3W electron microscopy 12.00 A/B/C/D/E/F/G/H/I/J/K/L 334-660 [» ]
    3H3Y electron microscopy 16.00 A/B/C/D/E/F/G/H/I/J/K/L 334-660 [» ]
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    DIPi DIP-48306N.

    Protein family/group databases

    TCDBi 1.K.1.1.1. the gp27/5 t4-baseplate (t4-bp) family.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 1258662.

    Miscellaneous databases

    EvolutionaryTracei P19060.

    Family and domain databases

    ProtoNeti Search...

    Publicationsi

    1. "Nucleotide sequences of bacteriophage T4 genes 6, 7 and 8."
      Efimov V.P., Prilipov A.G., Mesyanzhinov V.V.
      Nucleic Acids Res. 18:5313-5313(1990) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
      Strain: D.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    3. "Structure of the bacteriophage T4 baseplate as determined by chemical cross-linking."
      Watts N.R., Coombs D.H.
      J. Virol. 64:143-154(1990) [PubMed] [Europe PMC] [Abstract]
      Cited for: SUBUNIT.
    4. "The structure of gene product 6 of bacteriophage T4, the hinge-pin of the baseplate."
      Aksyuk A.A., Leiman P.G., Shneider M.M., Mesyanzhinov V.V., Rossmann M.G.
      Structure 17:800-808(2009) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (3.2 ANGSTROMS) OF 334-660.

    Entry informationi

    Entry nameiBP06_BPT4
    AccessioniPrimary (citable) accession number: P19060
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 1, 1990
    Last sequence update: November 1, 1990
    Last modified: October 1, 2014
    This is version 60 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programViral Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Reference proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references

    External Data

    Dasty 3