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Protein

Enterobactin biosynthesis protein YbdZ

Gene

ybdZ

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Involved in the biosynthesis of the siderophore enterobactin (enterochelin), which is a macrocyclic trimeric lactone of N-(2,3-dihydroxybenzoyl)-serine. Plays a role in the catalytic function of EntF. It is required for adenylation of amino acids in non-ribosomal peptide biosynthesis.1 Publication

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Enterobactin biosynthesis

Enzyme and pathway databases

BioCyciEcoCyc:MONOMER0-2659.
ECOL316407:JW0577-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Enterobactin biosynthesis protein YbdZ1 Publication
Gene namesi
Name:ybdZ1 Publication
Ordered Locus Names:b4511, JW0577
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14353. ybdZ.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc
Complete GO annotation...

Pathology & Biotechi

Disruption phenotypei

Cells lacking this gene are not able to produce enough enterobactin for efficient growth.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001686731 – 72Enterobactin biosynthesis protein YbdZAdd BLAST72

Proteomic databases

PaxDbiP18393.
PRIDEiP18393.

Interactioni

Protein-protein interaction databases

IntActiP18393. 1 interactor.
STRINGi511145.b4511.

Structurei

Secondary structure

172
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi6 – 8Combined sources3
Beta strandi14 – 18Combined sources5
Beta strandi24 – 28Combined sources5
Beta strandi38 – 44Combined sources7
Helixi46 – 56Combined sources11
Turni62 – 66Combined sources5

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
5JA1X-ray3.00B1-72[»]
ProteinModelPortaliP18393.
SMRiP18393.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the MbtH-like family.Curated

Phylogenomic databases

eggNOGiENOG41085A6. Bacteria.
COG3251. LUCA.
HOGENOMiHOG000249284.
InParanoidiP18393.
OMAiHWQDMRP.
PhylomeDBiP18393.

Family and domain databases

InterProiIPR005153. MbtH.
[Graphical view]
PfamiPF03621. MbtH. 1 hit.
[Graphical view]
SMARTiSM00923. MbtH. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P18393-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAFSNPFDDP QGAFYILRNA QGQFSLWPQQ CVLPAGWDIV CQPQSQASCQ
60 70
QWLEAHWRTL TPTNFTQLQE AQ
Length:72
Mass (Da):8,271
Last modified:November 1, 1990 - v1
Checksum:i164E0B87E00F1BB8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
J04216 Genomic DNA. Translation: AAA23758.1.
M60177 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: ABD18641.1.
AP009048 Genomic DNA. Translation: BAE76340.1.
PIRiB31958. Q3ECFS.
RefSeqiWP_000885798.1. NZ_LN832404.1.
YP_588441.1. NC_000913.3.

Genome annotation databases

EnsemblBacteriaiABD18641; ABD18641; b4511.
BAE76340; BAE76340; BAE76340.
GeneIDi1450243.
KEGGiecj:JW0577.
eco:b4511.
PATRICi32116344. VBIEscCol129921_0612.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
J04216 Genomic DNA. Translation: AAA23758.1.
M60177 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: ABD18641.1.
AP009048 Genomic DNA. Translation: BAE76340.1.
PIRiB31958. Q3ECFS.
RefSeqiWP_000885798.1. NZ_LN832404.1.
YP_588441.1. NC_000913.3.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
5JA1X-ray3.00B1-72[»]
ProteinModelPortaliP18393.
SMRiP18393.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiP18393. 1 interactor.
STRINGi511145.b4511.

Proteomic databases

PaxDbiP18393.
PRIDEiP18393.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABD18641; ABD18641; b4511.
BAE76340; BAE76340; BAE76340.
GeneIDi1450243.
KEGGiecj:JW0577.
eco:b4511.
PATRICi32116344. VBIEscCol129921_0612.

Organism-specific databases

EchoBASEiEB4099.
EcoGeneiEG14353. ybdZ.

Phylogenomic databases

eggNOGiENOG41085A6. Bacteria.
COG3251. LUCA.
HOGENOMiHOG000249284.
InParanoidiP18393.
OMAiHWQDMRP.
PhylomeDBiP18393.

Enzyme and pathway databases

BioCyciEcoCyc:MONOMER0-2659.
ECOL316407:JW0577-MONOMER.

Miscellaneous databases

PROiP18393.

Family and domain databases

InterProiIPR005153. MbtH.
[Graphical view]
PfamiPF03621. MbtH. 1 hit.
[Graphical view]
SMARTiSM00923. MbtH. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYBDZ_ECOLI
AccessioniPrimary (citable) accession number: P18393
Secondary accession number(s): Q2EEQ6, Q2MBL6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1990
Last sequence update: November 1, 1990
Last modified: November 30, 2016
This is version 107 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.