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Protein

Enterobactin biosynthesis protein YbdZ

Gene

ybdZ

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Involved in the biosynthesis of the siderophore enterobactin (enterochelin), which is a macrocyclic trimeric lactone of N-(2,3-dihydroxybenzoyl)-serine. Plays a role in the catalytic function of EntF. It is required for adenylation of amino acids in non-ribosomal peptide biosynthesis.1 Publication

GO - Biological processi

Keywordsi

Biological processEnterobactin biosynthesis

Enzyme and pathway databases

BioCyciEcoCyc:MONOMER0-2659

Names & Taxonomyi

Protein namesi
Recommended name:
Enterobactin biosynthesis protein YbdZ1 Publication
Gene namesi
Name:ybdZ1 Publication
Ordered Locus Names:b4511, JW0577
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14353 ybdZ

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc

Pathology & Biotechi

Disruption phenotypei

Cells lacking this gene are not able to produce enough enterobactin for efficient growth.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001686731 – 72Enterobactin biosynthesis protein YbdZAdd BLAST72

Proteomic databases

PaxDbiP18393
PRIDEiP18393

Interactioni

Protein-protein interaction databases

IntActiP18393, 1 interactor
STRINGi316385.ECDH10B_0653

Structurei

Secondary structure

172
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi6 – 8Combined sources3
Beta strandi14 – 18Combined sources5
Beta strandi24 – 28Combined sources5
Beta strandi38 – 44Combined sources7
Helixi46 – 56Combined sources11
Turni62 – 66Combined sources5

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
5JA1X-ray3.00B1-72[»]
ProteinModelPortaliP18393
SMRiP18393
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the MbtH-like family.Curated

Phylogenomic databases

eggNOGiENOG41085A6 Bacteria
COG3251 LUCA
HOGENOMiHOG000249284
InParanoidiP18393
OMAiNWTDIRP
PhylomeDBiP18393

Family and domain databases

InterProiView protein in InterPro
IPR005153 MbtH-like_dom
IPR038020 MbtH-like_sf
IPR037407 MLP_fam
PANTHERiPTHR38444 PTHR38444, 1 hit
PfamiView protein in Pfam
PF03621 MbtH, 1 hit
SMARTiView protein in SMART
SM00923 MbtH, 1 hit
SUPFAMiSSF160582 SSF160582, 1 hit

Sequencei

Sequence statusi: Complete.

P18393-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAFSNPFDDP QGAFYILRNA QGQFSLWPQQ CVLPAGWDIV CQPQSQASCQ
60 70
QWLEAHWRTL TPTNFTQLQE AQ
Length:72
Mass (Da):8,271
Last modified:November 1, 1990 - v1
Checksum:i164E0B87E00F1BB8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
J04216 Genomic DNA Translation: AAA23758.1
M60177 Genomic DNA No translation available.
U00096 Genomic DNA Translation: ABD18641.1
AP009048 Genomic DNA Translation: BAE76340.1
PIRiB31958 Q3ECFS
RefSeqiWP_000885798.1, NZ_LN832404.1
YP_588441.1, NC_000913.3

Genome annotation databases

EnsemblBacteriaiABD18641; ABD18641; b4511
BAE76340; BAE76340; BAE76340
GeneIDi1450243
KEGGiecj:JW0577
eco:b4511
PATRICifig|1411691.4.peg.1685

Similar proteinsi

Entry informationi

Entry nameiYBDZ_ECOLI
AccessioniPrimary (citable) accession number: P18393
Secondary accession number(s): Q2EEQ6, Q2MBL6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1990
Last sequence update: November 1, 1990
Last modified: March 28, 2018
This is version 113 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome
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Main funding by: National Institutes of Health