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P18162 (MCP_IRV1) Reviewed, UniProtKB/Swiss-Prot

Last modified October 16, 2013. Version 61. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Major capsid protein

Short name=MCP
Alternative name(s):
P50
Gene names
Name:MCP
OrganismTipula iridescent virus (TIV) (Insect iridescent virus type 1)
Taxonomic identifier10490 [NCBI]
Taxonomic lineageVirusesdsDNA viruses, no RNA stageIridoviridaeIridovirus
Virus hostTipula [TaxID: 41043]

Protein attributes

Sequence length464 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Major capsid protein that self assembles to form an icosahedral capsid. Represents around 50% of the total virion protein mass By similarity.

Subunit structure

Homotrimer By similarity.

Subcellular location

Virion Potential.

Post-translational modification

The N-terminus is blocked.

Sequence similarities

Belongs to the NCLDV major capsid protein family.

Ontologies

Keywords
   Cellular componentCapsid protein
Virion
   Developmental stageLate protein
   Technical termDirect protein sequencing
Gene Ontology (GO)
   Cellular_componentviral capsid

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionstructural molecule activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 464464Major capsid protein
PRO_0000222380

Sequences

Sequence LengthMass (Da)Tools
P18162 [UniParc].

Last modified November 1, 1990. Version 1.
Checksum: BCDD65F326270910

FASTA46450,833
        10         20         30         40         50         60 
MSMSSSNITS GFIDIATFDE IEKYMYGGPT ATAYFVREIR KSTWFTQVPV PLSRNTGNAA 

        70         80         90        100        110        120 
FGQEWSVSIS RAGDYLLQTW LRVNIPPVTL SGLLGNTYSL RWTKNLMHNL IREATITFND 

       130        140        150        160        170        180 
LVAARFDNYH LDFWSAFTVP ASKRNGYDNM IGNVSSLINP VAPGGTLGSV GGINLNLPLP 

       190        200        210        220        230        240 
FFFSRDTGVA LPTAALPYNE MQINFNFRDW HELLILTNSA LVPPASPYVP IVVGTHISAA 

       250        260        270        280        290        300 
PVLGPVQVWA NYAIVSNEER RRMGCAIRDI LIEQVQTAPR QNYVPLTNAS PTFDIRFSHA 

       310        320        330        340        350        360 
IKALFFAVRN KTSAAEWSNY ATSSPVVTGA TVNYEPTGSF DPIANTTLIY ENTNRLGAMG 

       370        380        390        400        410        420 
SDYFSLINPF YHAPTIPSFI GYHLYSYSLH FYDLDPMGST NYGKLTNVSV VPQASPAAIA 

       430        440        450        460 
AAGGTGGQAG SDYPQNYEFV ILAVNNNIVR ISGGETPQNY IAVC 

« Hide

References

[1]"Molecular cloning, characterization, and expression of the Tipula iridescent virus capsid gene."
Tajbakhsh S., Lee P.E., Watson D.C., Seligy V.L.
J. Virol. 64:125-136(1990) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], PARTIAL PROTEIN SEQUENCE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
M33542 Genomic DNA. Translation: AAA46245.1.
PIRVCXFTI. A33558.

3D structure databases

ProteinModelPortalP18162.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

Gene3D2.70.9.10. 1 hit.
2.70.9.20. 1 hit.
InterProIPR016114. ASFV_p72.
IPR016111. Hexon_subdom4.
IPR007542. Virus_major_coat_C.
IPR016112. VP_dsDNA_II.
[Graphical view]
PfamPF04451. Capsid_NCLDV. 1 hit.
[Graphical view]
SUPFAMSSF49749. SSF49749. 2 hits.
ProtoNetSearch...

Entry information

Entry nameMCP_IRV1
AccessionPrimary (citable) accession number: P18162
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1990
Last sequence update: November 1, 1990
Last modified: October 16, 2013
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families