Homeobox protein CDX-1 - Mus musculus (Mouse)

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.

Contribute

Send feedback

Read comments (?) or add your own

P18111 (CDX1_MOUSE) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 116. History...

Clusters with 100%, 90%, 50% identity |

Documents (2) |

Third-party data

text xml rdf/xml gff fasta

Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents Customize order

Names and origin

Protein names

Recommended name:
Homeobox protein CDX-1

Alternative name(s):
Caudal-type homeobox protein 1

Gene names

Name:	Cdx1
Synonyms:	Cdx-1

Organism

Mus musculus (Mouse) [Reference proteome]

Taxonomic identifier

10090 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus

Protein attributes

Sequence length	268 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Function	Could play a role in the terminal differentiation of the intestine.
Subcellular location	Nucleus.
Tissue specificity	Intestinal epithelium.
Sequence similarities	Belongs to the Caudal homeobox family. Contains 1 homeobox DNA-binding domain.

Ontologies

Keywords
Cellular component	Nucleus
Domain	Homeobox
Ligand	DNA-binding
Molecular function	Developmental protein
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	anterior/posterior pattern specification Inferred from mutant phenotype PubMed 11784046 PubMed 7585967. Source: MGI bone morphogenesis Inferred from mutant phenotype PubMed 11784046. Source: MGI positive regulation of transcription from RNA polymerase II promoter Inferred from direct assay PubMed 7585967. Source: MGI transcription from RNA polymerase II promoter Inferred from electronic annotation. Source: GOC
Cellular_component	nucleus Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	RNA polymerase II distal enhancer sequence-specific DNA binding Inferred from electronic annotation. Source: Ensembl RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription Inferred from electronic annotation. Source: Ensembl
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

1 – 268

268

Homeobox protein CDX-1

PRO_0000048847

Regions

DNA binding

154 – 213

Homeobox

Compositional bias

144 – 149

Poly-Gly

Compositional bias

217 – 221

Poly-Gln

Experimental info

Sequence conflict

P → Q in AAH19986. Ref.3

Sequence conflict

146

G → C in AAA37412. Ref.2

Sequence conflict

157

Y → S in AAA37412. Ref.2

Sequences

Sequence

Length

Mass (Da)

Tools

P18111 [UniParc].

Last modified November 1, 1995. Version 2.
Checksum: 85F45B2A3E12B2AE
Show »

FASTA

268

28,436

        10         20         30         40         50         60 
MYVGYVLDKD SPVYPGPARP SSLGLGPPTY APPGPAPAPP QYPDFAGYTH VEPAPAPPPT 

        70         80         90        100        110        120 
WAAPFPAPKD DWAAAYGPGP TASAASPAPL AFGPPPDFSP VPAPPGPGPG ILAQSLGAPG 

       130        140        150        160        170        180 
APSSPGAPRR TPYEWMRRSV AAAGGGGSGK TRTKDKYRVV YTDHQRLELE KEFHYSRYIT 

       190        200        210        220        230        240 
IRRKSELAAN LGLTERQVKI WFQNRRAKER KVNKKKQQQQ QPLPPTQLPL PLDGTPTPSG 

       250        260 
PPLGSLCPTN AGLLGTPSPV PVKEEFLP

« Hide

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Isolation and characterization of the murine homeobox gene Cdx-1. Regulation of expression in intestinal epithelial cells." Hu Y., Kazenwadel J., James R. J. Biol. Chem. 268:27214-27225(1993) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA]. Strain: BALB/c.
[2]	"A mouse gene homologous to the Drosophila gene caudal is expressed in epithelial cells from the embryonic intestine." Duprey P., Chowdhury K., Dressler G.R., Balling R., Simon D., Guenet J.-L., Gruss P. Genes Dev. 2:1647-1654(1988) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. Tissue: Embryonic intestine.
[3]	"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: FVB/N. Tissue: Colon.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	M37163 mRNA. Translation: AAA37412.1. Sequence problems. M80463 Unassigned DNA. Translation: AAA16447.1. Sequence problems. BC019986 mRNA. Translation: AAH19986.1.
PIR	A49303.
RefSeq	NP_034010.3. NM_009880.3.
UniGene	Mm.144448.
3D structure databases
ProteinModelPortal	P18111.
SMR	P18111. Positions 158-213.
ModBase	Search...
MobiDB	Search...
Protein-protein interaction databases
BioGrid	198663. 6 interactions.
STRING	10090.ENSMUSP00000025521.
PTM databases
PhosphoSite	P18111.
Proteomic databases
PRIDE	P18111.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSMUST00000025521; ENSMUSP00000025521; ENSMUSG00000024619.
GeneID	12590.
KEGG	mmu:12590.
UCSC	uc008fbj.2. mouse.
Organism-specific databases
CTD	1044.
MGI	MGI:88360. Cdx1.
Phylogenomic databases
eggNOG	NOG291290.
GeneTree	ENSGT00530000063388.
HOGENOM	HOG000115975.
HOVERGEN	HBG005302.
InParanoid	P18111.
KO	K09312.
OMA	YSHVEPG.
OrthoDB	EOG71P2BK.
TreeFam	TF351605.
Gene expression databases
Bgee	P18111.
CleanEx	MM_CDX1.
Genevestigator	P18111.
Family and domain databases
Gene3D	1.10.10.60. 1 hit.
InterPro	IPR006820. Caudal_activation_dom. IPR017970. Homeobox_CS. IPR001356. Homeobox_dom. IPR020479. Homeobox_metazoa. IPR009057. Homeodomain-like. IPR000047. HTH_motif. [Graphical view]
Pfam	PF04731. Caudal_act. 1 hit. PF00046. Homeobox. 1 hit. [Graphical view]
PRINTS	PR00024. HOMEOBOX. PR00031. HTHREPRESSR.
SMART	SM00389. HOX. 1 hit. [Graphical view]
SUPFAM	SSF46689. SSF46689. 1 hit.
PROSITE	PS00027. HOMEOBOX_1. 1 hit. PS50071. HOMEOBOX_2. 1 hit. [Graphical view]
ProtoNet	Search...
Other
NextBio	281734.
PRO	P18111.
SOURCE	Search...

Entry information

Entry name

CDX1_MOUSE

Accession

Primary (citable) accession number: P18111
Secondary accession number(s): Q8VCF7

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 1, 1990
Last sequence update:	November 1, 1995
Last modified:	February 19, 2014
This is version 116 of the entry and version 2 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Chordata Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

MGD cross-references

Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot

Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents

Preferred order of sections

Names and origin

Protein attributes

General annotation (Comments)

Ontologies

Sequence annotation (Features)

Molecule processing

Regions

Experimental info

Sequences

References

Cross-references

Sequence databases

3D structure databases

Protein-protein interaction databases

PTM databases

Proteomic databases

Protocols and materials databases

Genome annotation databases

Organism-specific databases

Phylogenomic databases

Gene expression databases

Family and domain databases

Other

Entry information

Relevant documents