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P18067

- RAB7A_CANFA

UniProt

P18067 - RAB7A_CANFA

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Protein
Ras-related protein Rab-7a
Gene
RAB7A, RAB7
Organism
Canis familiaris (Dog) (Canis lupus familiaris)
Status
Reviewed - Annotation score: 5 out of 5 - Experimental evidence at transcript leveli

Functioni

Key regulator in endo-lysosomal trafficking. Governs early-to-late endosomal maturation, microtubule minus-end as well as plus-end directed endosomal migration and positioning, and endosome-lysosome transport through different protein-protein interaction cascades. Plays a central role, not only in endosomal traffic, but also in many other cellular and physiological events, such as growth-factor-mediated cell signaling, nutrient-transportor mediated nutrient uptake, neurotrophin transport in the axons of neurons and lipid metabolism. Also involved in regulation of some specialized endosomal membrane trafficking, such as maturation of melanosomes, pathogen-induced phagosomes (or vacuoles) and autophagosomes. Plays a role in the maturation and acidification of phagosomes that engulf pathogens, such as S.aureus and Mycobacteria. Plays a role in the fusion of phagosomes with lysosomes By similarity. Plays important roles in microbial pathogen infection and survival, as well as in participating in the life cycle of viruses. Microbial pathogens possess survival strategies governed by RAB7A, sometimes by employing RAB7A function (e.g. Salmonella) and sometimes by excluding RAB7A function (e.g. Mycobacterium). In concert with RAC1, plays a role in regulating the formation of RBs (ruffled borders) in osteoclasts. Controls the endosomal trafficking and neurite outgrowth signaling of NTRK1/TRKA. Regulates the endocytic trafficking of the EGF-EGFR complex by regulating its lysosomal degradation.3 Publications

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi15 – 228GTP By similarity
Nucleotide bindingi34 – 407GTP By similarity
Nucleotide bindingi63 – 675GTP By similarity
Nucleotide bindingi125 – 1284GTP By similarity
Nucleotide bindingi156 – 1572GTP By similarity

GO - Molecular functioni

  1. GTP binding Source: UniProtKB-KW
  2. GTPase activity Source: Ensembl

GO - Biological processi

  1. early endosome to late endosome transport Source: UniProtKB
  2. endosome to lysosome transport Source: Ensembl
  3. epidermal growth factor catabolic process Source: UniProtKB
  4. phagosome acidification Source: UniProtKB
  5. phagosome-lysosome fusion Source: UniProtKB
  6. protein targeting to lysosome Source: Ensembl
  7. small GTPase mediated signal transduction Source: InterPro
Complete GO annotation...

Keywords - Biological processi

Protein transport, Transport

Keywords - Ligandi

GTP-binding, Nucleotide-binding

Enzyme and pathway databases

ReactomeiREACT_221251. MHC class II antigen presentation.

Names & Taxonomyi

Protein namesi
Recommended name:
Ras-related protein Rab-7a
Gene namesi
Name:RAB7A
Synonyms:RAB7
OrganismiCanis familiaris (Dog) (Canis lupus familiaris)
Taxonomic identifieri9615 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCarnivoraCaniformiaCanidaeCanis
ProteomesiUP000002254: Chromosome 20

Subcellular locationi

Late endosome. Lysosome By similarity. Cytoplasmic vesiclephagosome By similarity. Cytoplasmic vesiclephagosome membrane; Lipid-anchor; Cytoplasmic side By similarity. Melanosome By similarity
Note: Colocalizes with OSBPL1A at the late endosome. Found in the ruffled border (a late endosomal-like compartment in the plasma membrane) of bone-resorbing osteoclasts. Recruited to phagosomes containing S.aureus or Mycobacterium By similarity.

GO - Cellular componenti

  1. Golgi apparatus Source: Ensembl
  2. late endosome Source: UniProtKB
  3. lysosome Source: UniProtKB-SubCell
  4. melanosome Source: UniProtKB-SubCell
  5. phagocytic vesicle Source: UniProtKB
  6. phagocytic vesicle membrane Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasmic vesicle, Endosome, Lysosome, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 207207Ras-related protein Rab-7a
PRO_0000121120Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei72 – 721Phosphoserine By similarity
Lipidationi205 – 2051S-geranylgeranyl cysteine By similarity
Modified residuei207 – 2071Cysteine methyl ester By similarity
Lipidationi207 – 2071S-geranylgeranyl cysteine By similarity

Keywords - PTMi

Lipoprotein, Methylation, Phosphoprotein, Prenylation

Proteomic databases

PaxDbiP18067.
PRIDEiP18067.

Interactioni

Subunit structurei

Interacts with NTRK1/TRKA, RILP, PSMA7, RNF115 and FYCO1. Interacts with the PIK3C3/VPS34-PIK3R4 complex. The GTP-bound form interacts with OSBPL1A and RAC1 By similarity. Interacts with CLN3. Interacts with CHM, the substrate-binding subunit of the Rab geranylgeranyltransferase complex By similarity. Interacts with C9orf72 By similarity.

Protein-protein interaction databases

IntActiP18067. 2 interactions.
MINTiMINT-8387239.
STRINGi9615.ENSCAFP00000034211.

Structurei

3D structure databases

ProteinModelPortaliP18067.
SMRiP18067. Positions 7-190.

Family & Domainsi

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi37 – 459Effector region By similarity

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG1100.
GeneTreeiENSGT00700000104345.
HOGENOMiHOG000233968.
HOVERGENiHBG009351.
InParanoidiP18067.
KOiK07897.
OMAiDYPDPIK.
OrthoDBiEOG7G4QG8.
TreeFamiTF105605.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR001806. Small_GTPase.
IPR003579. Small_GTPase_Rab_type.
[Graphical view]
PfamiPF00071. Ras. 1 hit.
[Graphical view]
PRINTSiPR00449. RASTRNSFRMNG.
SMARTiSM00175. RAB. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR00231. small_GTP. 1 hit.
PROSITEiPS51419. RAB. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P18067-1 [UniParc]FASTAAdd to Basket

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MTSRKKVLLK VIILGDSGVG KTSLMNQYVN KKFSNQYKAT IGADFLTKEV    50
MVDDRLVTMQ IWDTAGQERF QSLGVAFYRG ADCCVLVFDV TAPNTFKTLD 100
SWRDEFLIQA SPRDPENFPF VVLGNKIDLE NRQVATKRAQ AWCYSKNNIP 150
YFETSAKEAI NVEQAFQTIA RNALKQETEV ELYNEFPEPI KLDKNDRAKT 200
SAESCSC 207
Length:207
Mass (Da):23,520
Last modified:November 1, 1990 - v1
Checksum:iE3AF33B16A67296D
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
M35522 mRNA. Translation: AAA30890.1.
PIRiB30413.
RefSeqiNP_001003316.1. NM_001003316.1.
XP_005632072.1. XM_005632015.1.
UniGeneiCfa.29293.

Genome annotation databases

EnsembliENSCAFT00000038482; ENSCAFP00000034211; ENSCAFG00000004157.
GeneIDi404007.
KEGGicfa:404007.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
M35522 mRNA. Translation: AAA30890.1 .
PIRi B30413.
RefSeqi NP_001003316.1. NM_001003316.1.
XP_005632072.1. XM_005632015.1.
UniGenei Cfa.29293.

3D structure databases

ProteinModelPortali P18067.
SMRi P18067. Positions 7-190.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

IntActi P18067. 2 interactions.
MINTi MINT-8387239.
STRINGi 9615.ENSCAFP00000034211.

Chemistry

BindingDBi P18067.

Proteomic databases

PaxDbi P18067.
PRIDEi P18067.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSCAFT00000038482 ; ENSCAFP00000034211 ; ENSCAFG00000004157 .
GeneIDi 404007.
KEGGi cfa:404007.

Organism-specific databases

CTDi 7879.

Phylogenomic databases

eggNOGi COG1100.
GeneTreei ENSGT00700000104345.
HOGENOMi HOG000233968.
HOVERGENi HBG009351.
InParanoidi P18067.
KOi K07897.
OMAi DYPDPIK.
OrthoDBi EOG7G4QG8.
TreeFami TF105605.

Enzyme and pathway databases

Reactomei REACT_221251. MHC class II antigen presentation.

Miscellaneous databases

NextBioi 20817494.

Family and domain databases

Gene3Di 3.40.50.300. 1 hit.
InterProi IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR001806. Small_GTPase.
IPR003579. Small_GTPase_Rab_type.
[Graphical view ]
Pfami PF00071. Ras. 1 hit.
[Graphical view ]
PRINTSi PR00449. RASTRNSFRMNG.
SMARTi SM00175. RAB. 1 hit.
[Graphical view ]
SUPFAMi SSF52540. SSF52540. 1 hit.
TIGRFAMsi TIGR00231. small_GTP. 1 hit.
PROSITEi PS51419. RAB. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Localization of low molecular weight GTP binding proteins to exocytic and endocytic compartments."
    Chavrier P., Parton R.G., Hauri H.P., Simons K., Zerial M.
    Cell 62:317-329(1990) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
  2. "Molecular cloning of YPT1/SEC4-related cDNAs from an epithelial cell line."
    Chavrier P., Vingron M., Sander C., Simons K., Zerial M.
    Mol. Cell. Biol. 10:6578-6585(1990) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: Cocker spaniel.
    Tissue: Kidney.
  3. "Rab 7: an important regulator of late endocytic membrane traffic."
    Feng Y., Press B., Wandinger-Ness A.
    J. Cell Biol. 131:1435-1452(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION.
  4. "Mutant Rab7 causes the accumulation of cathepsin D and cation-independent mannose 6-phosphate receptor in an early endocytic compartment."
    Press B., Feng Y., Hoflack B., Wandinger-Ness A.
    J. Cell Biol. 140:1075-1089(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION.
  5. "rab7 activity affects epidermal growth factor:epidermal growth factor receptor degradation by regulating endocytic trafficking from the late endosome."
    Ceresa B.P., Bahr S.J.
    J. Biol. Chem. 281:1099-1106(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION.

Entry informationi

Entry nameiRAB7A_CANFA
AccessioniPrimary (citable) accession number: P18067
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1990
Last sequence update: November 1, 1990
Last modified: September 3, 2014
This is version 122 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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