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Protein

Coat protein

Gene
N/A
Organism
Potato virus X (strain X3) (PVX)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Required for genome encapsidation. Forms ribonucleoprotein complexes along with TGB1 helicase and viral RNA.

GO - Molecular functioni

Keywordsi

Molecular functionRibonucleoprotein

Names & Taxonomyi

Protein namesi
Recommended name:
Coat protein
Alternative name(s):
Capsid protein
Short name:
CP
OrganismiPotato virus X (strain X3) (PVX)
Taxonomic identifieri12185 [NCBI]
Taxonomic lineageiVirusesssRNA virusesssRNA positive-strand viruses, no DNA stageTymoviralesAlphaflexiviridaePotexvirus
Virus hostiBrassica campestris (Field mustard) [TaxID: 3711]
Solanum tuberosum (Potato) [TaxID: 4113]
Proteomesi
  • UP000008687 Componenti: Genome

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Capsid protein, Helical capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002226281 – 237Coat proteinAdd BLAST237

Structurei

3D structure databases

SMRiP17782.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the potexvirus capsid protein family.Curated

Phylogenomic databases

OrthoDBiVOG090000QE.

Family and domain databases

InterProiView protein in InterPro
IPR000052. Pltvir_coat.
PfamiView protein in Pfam
PF00286. Flexi_CP. 1 hit.
PRINTSiPR00232. POTXCARLCOAT.
PROSITEiView protein in PROSITE
PS00418. POTEX_CARLAVIRUS_COAT. 1 hit.

Sequencei

Sequence statusi: Complete.

P17782-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSAPASTTQA TGSTTSTTTK TAGATPATAS GLFTIPDGDF FSTARAIVAS
60 70 80 90 100
NAVATNEDLS KIEAIWKDMK VPTDTMAQAA WDLVRHCADV GSSAQTEMID
110 120 130 140 150
TGPYSNGISR ARLAAAIKEV CTLRQFCMKY APVVWNWMLT NNSPPANWQA
160 170 180 190 200
QGFKPEHKFA AFDFFNGVTN PAAIMPKEGL IRPPSEAEMN AAQTAAFVKI
210 220 230
TKARAQSNDF ASLDAAVTRG RITGTTTAEA VVTLPPP
Length:237
Mass (Da):25,081
Last modified:August 1, 1990 - v1
Checksum:i9266B957792B92FA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D00344 Genomic RNA. Translation: BAA00253.1.
PIRiJA0106. VCWGPV.
RefSeqiYP_002332933.1. NC_011620.1.

Genome annotation databases

GeneIDi7065758.
KEGGivg:7065758.

Similar proteinsi

Entry informationi

Entry nameiCAPSD_PVXX3
AccessioniPrimary (citable) accession number: P17782
Entry historyiIntegrated into UniProtKB/Swiss-Prot: August 1, 1990
Last sequence update: August 1, 1990
Last modified: March 15, 2017
This is version 72 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families