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Protein

Double gene block protein 1

Gene

ORF2

Organism
Turnip crinkle virus (TCV)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Cell-to-cell movement. Displays RNA-binding activity (By similarity).By similarity

GO - Molecular functioni

  1. RNA binding Source: UniProtKB-KW

GO - Biological processi

  1. transmission of virus Source: InterPro
  2. transport of virus in host, cell to cell Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Viral movement protein

Keywords - Biological processi

Transport

Keywords - Ligandi

RNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Double gene block protein 1
Short name:
DGBp1
Alternative name(s):
Movement protein P8
Gene namesi
ORF Names:ORF2
OrganismiTurnip crinkle virus (TCV)
Taxonomic identifieri11988 [NCBI]
Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageTombusviridaeCarmovirus
Virus hostiBrassica napus subsp. rapifera [TaxID: 3709]
Hypomyces [TaxID: 5130]
Moricandia arvensis (Purple mistress) (Brassica arvensis) [TaxID: 180540]
ProteomesiUP000007403 Componenti: Genome UP000009133 Componenti: Genome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7272Double gene block protein 1PRO_0000222897Add
BLAST

Interactioni

Subunit structurei

Interacts with Arabidopsis thaliana RCD1.1 Publication

Family & Domainsi

Sequence similaritiesi

Family and domain databases

InterProiIPR007982. Tombusvirus_movement.
[Graphical view]
PfamiPF05318. Tombus_movement. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P17461-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDPERIPYNS LSDSDATGKR KKGGEKSAKK RLVASHAASS VLNKKRNEGS
60 70
ASHGGTWVIV ADKVEVSINF NF
Length:72
Mass (Da):7,774
Last modified:August 1, 1990 - v1
Checksum:i64E6CB66C0468E07
GO

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti17 – 171T → P in strain: Infectious clone UK.
Natural varianti41 – 411V → A in strain: Infectious clone UK.
Natural varianti47 – 471N → D in strain: Infectious clone UK.

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M22445 Genomic RNA. Translation: AAA96970.1.
AY312063 Genomic RNA. Translation: AAP78487.1.
PIRiJA0112. WMVETC.
RefSeqiNP_620722.1. NC_003821.3.

Genome annotation databases

GeneIDi944393.
KEGGivg:944393.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M22445 Genomic RNA. Translation: AAA96970.1.
AY312063 Genomic RNA. Translation: AAP78487.1.
PIRiJA0112. WMVETC.
RefSeqiNP_620722.1. NC_003821.3.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi944393.
KEGGivg:944393.

Family and domain databases

InterProiIPR007982. Tombusvirus_movement.
[Graphical view]
PfamiPF05318. Tombus_movement. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
  2. Ryabov E.V.
    Submitted (JUN-2003) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
    Strain: Infectious clone UK.
  3. "An Arabidopsis thaliana protein interacts with a movement protein of Turnip crinkle virus in yeast cells and in vitro."
    Lin B., Heaton L.A.
    J. Gen. Virol. 82:1245-1251(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: INTERACTION WITH ARABIDOPSIS THALIANA RCD1.

Entry informationi

Entry nameiMP1_TCV
AccessioniPrimary (citable) accession number: P17461
Secondary accession number(s): Q7TD20
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 1, 1990
Last sequence update: August 1, 1990
Last modified: April 1, 2015
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.