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P17456

- CAPSD_CRV

UniProt

P17456 - CAPSD_CRV

Protein

Capsid protein

Gene

ORF2

Organism
Cymbidium ringspot virus (CymRSV)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 52 (01 Oct 2014)
      Sequence version 2 (05 Oct 2010)
      Previous versions | rss
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    Functioni

    Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 32-35 nm in diameter, and consisting of 180 capsid proteins.

    GO - Molecular functioni

    1. RNA binding Source: UniProtKB-KW
    2. structural molecule activity Source: InterPro

    Keywords - Ligandi

    RNA-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Capsid protein
    Alternative name(s):
    Coat protein
    p41
    Gene namesi
    ORF Names:ORF2
    OrganismiCymbidium ringspot virus (CymRSV)
    Taxonomic identifieri12144 [NCBI]
    Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageTombusviridaeTombusvirus
    Virus hostiCymbidium [TaxID: 14366]
    Trifolium repens (Creeping white clover) [TaxID: 3899]
    ProteomesiUP000008567: Genome

    Subcellular locationi

    Virion Curated

    GO - Cellular componenti

    1. T=3 icosahedral viral capsid Source: UniProtKB-KW

    Keywords - Cellular componenti

    Capsid protein, T=3 icosahedral capsid protein, Virion

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 380380Capsid proteinPRO_0000222862Add
    BLAST

    Interactioni

    Subunit structurei

    Homomultimer.Curated

    Structurei

    3D structure databases

    ProteinModelPortaliP17456.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Region

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Regioni1 – 9898R domain, interaction with RNAAdd
    BLAST
    Regioni54 – 596Involved in encapsidationBy similarity
    Regioni99 – 259161S domain, virion shellAdd
    BLAST
    Regioni260 – 380121P domain, projectingAdd
    BLAST

    Sequence similaritiesi

    Family and domain databases

    Gene3Di2.60.120.20. 1 hit.
    InterProiIPR000937. Capsid_prot_S-dom_vir.
    IPR029053. Viral_coat.
    [Graphical view]
    PfamiPF00729. Viral_coat. 1 hit.
    [Graphical view]
    PRINTSiPR00233. ICOSAHEDRAL.
    PROSITEiPS00555. ICOSAH_VIR_COAT_S. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P17456-1 [UniParc]FASTAAdd to Basket

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    MAMTTTNNNR AMTRAAKQAL PALGALATSG MGQQLFMSGV NYAIEKGKQF    50
    VPNRRGGKKN RNTDMVAHPG ALSGSMAAPV AISRIVRGSK PRFIRSKGSV 100
    TITHRELVGQ FNSSSALVVN GGITGNLYKI NPANAVLFPW LQTLASNFDQ 150
    YMFNTLRLQY VPMCASTETG RVAIYFDKDS QDLEPVDRIE LANMRHLTET 200
    APWCEGSLRV PVDSVKRFMN DNSTVDPKLI DLGQVGLATY GGPGTNAVGD 250
    LFIHYTVTFY EPQPSSGLTS TLQTGTGSAN AGPTLVAVAT TATTTTVTFR 300
    SPGTYLVSMV QRATTFTGVT PIALTFNSNT NTTAAGTNYS ANYNVTVPVP 350
    GAQMRFVGTG FGNYTLQVTR AKITNAATLL 380
    Length:380
    Mass (Da):40,566
    Last modified:October 5, 2010 - v2
    Checksum:i83EB3DDDDE5CC1B5
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X15511 Genomic RNA. Translation: CAA33533.1.
    PIRiJS0269. VCVGCR.
    S05457.
    RefSeqiNP_613262.1. NC_003532.1.

    Genome annotation databases

    GeneIDi935899.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X15511 Genomic RNA. Translation: CAA33533.1 .
    PIRi JS0269. VCVGCR.
    S05457.
    RefSeqi NP_613262.1. NC_003532.1.

    3D structure databases

    ProteinModelPortali P17456.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 935899.

    Family and domain databases

    Gene3Di 2.60.120.20. 1 hit.
    InterProi IPR000937. Capsid_prot_S-dom_vir.
    IPR029053. Viral_coat.
    [Graphical view ]
    Pfami PF00729. Viral_coat. 1 hit.
    [Graphical view ]
    PRINTSi PR00233. ICOSAHEDRAL.
    PROSITEi PS00555. ICOSAH_VIR_COAT_S. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Nucleotide sequence of the 3'-terminal region of cymbidium ringspot virus RNA."
      Grieco F., Burgyan J., Russo M.
      J. Gen. Virol. 70:2533-2538(1989) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

    Entry informationi

    Entry nameiCAPSD_CRV
    AccessioniPrimary (citable) accession number: P17456
    Secondary accession number(s): Q66226
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: August 1, 1990
    Last sequence update: October 5, 2010
    Last modified: October 1, 2014
    This is version 52 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programViral Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3