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P17456 (CAPSD_CRV) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 51. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Capsid protein
Alternative name(s):
Coat protein
p41
Gene names
ORF Names:ORF2
OrganismCymbidium ringspot virus (CymRSV) [Complete proteome]
Taxonomic identifier12144 [NCBI]
Taxonomic lineageVirusesssRNA positive-strand viruses, no DNA stageTombusviridaeTombusvirus
Virus hostCymbidium [TaxID: 14366]
Trifolium repens (Creeping white clover) [TaxID: 3899]

Protein attributes

Sequence length380 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 32-35 nm in diameter, and consisting of 180 capsid proteins.

Subunit structure

Homomultimer Potential.

Subcellular location

Virion Potential.

Sequence similarities

Belongs to the icosahedral plant coat protein family.

Ontologies

Keywords
   Cellular componentCapsid protein
T=3 icosahedral capsid protein
Virion
   LigandRNA-binding
   Technical termComplete proteome
Gene Ontology (GO)
   Cellular_componentT=3 icosahedral viral capsid

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionRNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

structural molecule activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 380380Capsid protein
PRO_0000222862

Regions

Region1 – 9898R domain, interaction with RNA
Region54 – 596Involved in encapsidation By similarity
Region99 – 259161S domain, virion shell
Region260 – 380121P domain, projecting

Sequences

Sequence LengthMass (Da)Tools
P17456 [UniParc].

Last modified October 5, 2010. Version 2.
Checksum: 83EB3DDDDE5CC1B5

FASTA38040,566
        10         20         30         40         50         60 
MAMTTTNNNR AMTRAAKQAL PALGALATSG MGQQLFMSGV NYAIEKGKQF VPNRRGGKKN 

        70         80         90        100        110        120 
RNTDMVAHPG ALSGSMAAPV AISRIVRGSK PRFIRSKGSV TITHRELVGQ FNSSSALVVN 

       130        140        150        160        170        180 
GGITGNLYKI NPANAVLFPW LQTLASNFDQ YMFNTLRLQY VPMCASTETG RVAIYFDKDS 

       190        200        210        220        230        240 
QDLEPVDRIE LANMRHLTET APWCEGSLRV PVDSVKRFMN DNSTVDPKLI DLGQVGLATY 

       250        260        270        280        290        300 
GGPGTNAVGD LFIHYTVTFY EPQPSSGLTS TLQTGTGSAN AGPTLVAVAT TATTTTVTFR 

       310        320        330        340        350        360 
SPGTYLVSMV QRATTFTGVT PIALTFNSNT NTTAAGTNYS ANYNVTVPVP GAQMRFVGTG 

       370        380 
FGNYTLQVTR AKITNAATLL 

« Hide

References

[1]"Nucleotide sequence of the 3'-terminal region of cymbidium ringspot virus RNA."
Grieco F., Burgyan J., Russo M.
J. Gen. Virol. 70:2533-2538(1989) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
X15511 Genomic RNA. Translation: CAA33533.1.
PIRVCVGCR. JS0269.
S05457.
RefSeqNP_613262.1. NC_003532.1.

3D structure databases

ProteinModelPortalP17456.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID935899.

Family and domain databases

Gene3D2.60.120.20. 1 hit.
InterProIPR000937. Capsid_prot_S-dom_vir.
IPR029053. Viral_coat.
[Graphical view]
PfamPF00729. Viral_coat. 1 hit.
[Graphical view]
PRINTSPR00233. ICOSAHEDRAL.
PROSITEPS00555. ICOSAH_VIR_COAT_S. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameCAPSD_CRV
AccessionPrimary (citable) accession number: P17456
Secondary accession number(s): Q66226
Entry history
Integrated into UniProtKB/Swiss-Prot: August 1, 1990
Last sequence update: October 5, 2010
Last modified: July 9, 2014
This is version 51 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families