Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

P17456

- CAPSD_CRV

UniProt

P17456 - CAPSD_CRV

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein

Capsid protein

Gene

ORF2

Organism
Cymbidium ringspot virus (CymRSV)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 32-35 nm in diameter, and consisting of 180 capsid proteins.

GO - Molecular functioni

  1. RNA binding Source: UniProtKB-KW
  2. structural molecule activity Source: InterPro
Complete GO annotation...

Keywords - Ligandi

RNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Capsid protein
Alternative name(s):
Coat protein
p41
Gene namesi
ORF Names:ORF2
OrganismiCymbidium ringspot virus (CymRSV)
Taxonomic identifieri12144 [NCBI]
Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageTombusviridaeTombusvirus
Virus hostiCymbidium [TaxID: 14366]
Trifolium repens (Creeping white clover) [TaxID: 3899]
ProteomesiUP000008567: Genome

Subcellular locationi

Virion Curated

GO - Cellular componenti

  1. T=3 icosahedral viral capsid Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Capsid protein, T=3 icosahedral capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 380380Capsid proteinPRO_0000222862Add
BLAST

Interactioni

Subunit structurei

Homomultimer.Curated

Structurei

3D structure databases

ProteinModelPortaliP17456.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni1 – 9898R domain, interaction with RNAAdd
BLAST
Regioni54 – 596Involved in encapsidationBy similarity
Regioni99 – 259161S domain, virion shellAdd
BLAST
Regioni260 – 380121P domain, projectingAdd
BLAST

Sequence similaritiesi

Family and domain databases

Gene3Di2.60.120.20. 1 hit.
InterProiIPR000937. Capsid_prot_S-dom_vir.
IPR029053. Viral_coat.
[Graphical view]
PfamiPF00729. Viral_coat. 1 hit.
[Graphical view]
PRINTSiPR00233. ICOSAHEDRAL.
PROSITEiPS00555. ICOSAH_VIR_COAT_S. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P17456-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAMTTTNNNR AMTRAAKQAL PALGALATSG MGQQLFMSGV NYAIEKGKQF
60 70 80 90 100
VPNRRGGKKN RNTDMVAHPG ALSGSMAAPV AISRIVRGSK PRFIRSKGSV
110 120 130 140 150
TITHRELVGQ FNSSSALVVN GGITGNLYKI NPANAVLFPW LQTLASNFDQ
160 170 180 190 200
YMFNTLRLQY VPMCASTETG RVAIYFDKDS QDLEPVDRIE LANMRHLTET
210 220 230 240 250
APWCEGSLRV PVDSVKRFMN DNSTVDPKLI DLGQVGLATY GGPGTNAVGD
260 270 280 290 300
LFIHYTVTFY EPQPSSGLTS TLQTGTGSAN AGPTLVAVAT TATTTTVTFR
310 320 330 340 350
SPGTYLVSMV QRATTFTGVT PIALTFNSNT NTTAAGTNYS ANYNVTVPVP
360 370 380
GAQMRFVGTG FGNYTLQVTR AKITNAATLL
Length:380
Mass (Da):40,566
Last modified:October 5, 2010 - v2
Checksum:i83EB3DDDDE5CC1B5
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X15511 Genomic RNA. Translation: CAA33533.1.
PIRiJS0269. VCVGCR.
S05457.
RefSeqiNP_613262.1. NC_003532.1.

Genome annotation databases

GeneIDi935899.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X15511 Genomic RNA. Translation: CAA33533.1 .
PIRi JS0269. VCVGCR.
S05457.
RefSeqi NP_613262.1. NC_003532.1.

3D structure databases

ProteinModelPortali P17456.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 935899.

Family and domain databases

Gene3Di 2.60.120.20. 1 hit.
InterProi IPR000937. Capsid_prot_S-dom_vir.
IPR029053. Viral_coat.
[Graphical view ]
Pfami PF00729. Viral_coat. 1 hit.
[Graphical view ]
PRINTSi PR00233. ICOSAHEDRAL.
PROSITEi PS00555. ICOSAH_VIR_COAT_S. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Nucleotide sequence of the 3'-terminal region of cymbidium ringspot virus RNA."
    Grieco F., Burgyan J., Russo M.
    J. Gen. Virol. 70:2533-2538(1989) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Entry informationi

Entry nameiCAPSD_CRV
AccessioniPrimary (citable) accession number: P17456
Secondary accession number(s): Q66226
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 1, 1990
Last sequence update: October 5, 2010
Last modified: October 1, 2014
This is version 52 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3