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Protein

60S ribosomal protein L3-1

Gene

ARP1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L3-1
Alternative name(s):
Protein EMBRYO DEFECTIVE 2207
Gene namesi
Name:ARP1
Synonyms:EMB2207, RPL3A
Ordered Locus Names:At1g43170
ORF Names:F1I21.1
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G43170.

Subcellular locationi

GO - Cellular componenti

  • cell wall Source: TAIR
  • cytosol Source: TAIR
  • cytosolic large ribosomal subunit Source: TAIR
  • cytosolic ribosome Source: TAIR
  • membrane Source: TAIR
  • nucleolus Source: TAIR
  • plasma membrane Source: TAIR
  • plasmodesma Source: TAIR
  • vacuolar membrane Source: TAIR
  • vacuole Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 38938960S ribosomal protein L3-1PRO_0000077239Add
BLAST

Proteomic databases

PaxDbiP17094.
PRIDEiP17094.

PTM databases

iPTMnetiP17094.

Expressioni

Gene expression databases

ExpressionAtlasiP17094. baseline and differential.
GenevisibleiP17094. AT.

Interactioni

Protein-protein interaction databases

BioGridi26141. 14 interactions.
IntActiP17094. 8 interactions.
STRINGi3702.AT1G43170.1.

Structurei

3D structure databases

ProteinModelPortaliP17094.
SMRiP17094. Positions 9-346.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L3P family.Curated

Phylogenomic databases

eggNOGiKOG0746. Eukaryota.
COG0087. LUCA.
InParanoidiP17094.
KOiK02925.
OMAiSPTEGME.
PhylomeDBiP17094.

Family and domain databases

InterProiIPR000597. Ribosomal_L3.
IPR019926. Ribosomal_L3_CS.
IPR009000. Transl_B-barrel.
[Graphical view]
PfamiPF00297. Ribosomal_L3. 1 hit.
[Graphical view]
SUPFAMiSSF50447. SSF50447. 1 hit.
PROSITEiPS00474. RIBOSOMAL_L3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

This entry describes 1 isoform i produced by alternative splicing. AlignAdd to basket

Note: A number of isoforms are produced. According to EST sequences.

Isoform 1 (identifier: P17094-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MSHRKFEHPR HGSLGFLPRK RANRHRGKVK AFPKDDQTKP CKFTAFMGYK
60 70 80 90 100
AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPAMVVVGVV AYVKTPRGLR
110 120 130 140 150
SLNTVWAQHL SEEVRRRFYK NWAKSKKKAF TGYAKQYDSE DGKKGIQAQL
160 170 180 190 200
EKMKKYATVI RVLAHTQIRK MKGLKQKKAH MMEIQINGGT IAQKVDFAYS
210 220 230 240 250
FFEKQIPIEA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR
260 270 280 290 300
KVACIGAWHP ARVSYTVARA GQNGYHHRTE LNKKIYRLGK VGTEAHTAMT
310 320 330 340 350
EYDRTEKDVT PMGGFPHYGI VKDDYLMIKG CCVGPKKRVV TLRQSLLTQT
360 370 380
SRLALEEIKL KFIDTASIFG HGRFQTSLEK MRFYNRVTK
Length:389
Mass (Da):44,559
Last modified:January 23, 2007 - v5
Checksum:i30A10E72F0705557
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti153 – 1531M → V in AAA66160 (PubMed:2227432).Curated
Sequence conflicti326 – 3261L → F in AAA66160 (PubMed:2227432).Curated
Sequence conflicti335 – 3351P → A in AAA66160 (PubMed:2227432).Curated
Sequence conflicti373 – 3731R → Q in AAA66160 (PubMed:2227432).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M32654 mRNA. Translation: AAA66160.1.
AC005687 Genomic DNA. Translation: AAC36018.1.
CP002684 Genomic DNA. Translation: AEE31951.1.
CP002684 Genomic DNA. Translation: AEE31952.1.
CP002684 Genomic DNA. Translation: AEE31953.1.
CP002684 Genomic DNA. Translation: AEE31955.1.
CP002684 Genomic DNA. Translation: AEE31956.1.
CP002684 Genomic DNA. Translation: AEE31957.1.
CP002684 Genomic DNA. Translation: AEE31958.1.
CP002684 Genomic DNA. Translation: AEE31959.1.
AY057487 mRNA. Translation: AAL09721.1.
AF327421 mRNA. Translation: AAG42011.1.
AF361101 mRNA. Translation: AAK27726.1.
AF361809 mRNA. Translation: AAK32822.1.
AY039544 mRNA. Translation: AAK62599.1.
AY052743 mRNA. Translation: AAK96457.1.
Z25950 mRNA. Translation: CAA81111.1.
PIRiE96498.
JQ0771.
RefSeqiNP_001031146.1. NM_001036069.1. [P17094-1]
NP_001185148.1. NM_001198219.1. [P17094-1]
NP_001185149.1. NM_001198220.1. [P17094-1]
NP_001185150.1. NM_001198221.1. [P17094-1]
NP_001185151.1. NM_001198222.1. [P17094-1]
NP_001185152.1. NM_001198223.1. [P17094-1]
NP_175009.1. NM_103469.3. [P17094-1]
NP_973966.1. NM_202237.1. [P17094-1]
UniGeneiAt.21634.
At.24630.
At.48973.
At.7195.

Genome annotation databases

EnsemblPlantsiAT1G43170.1; AT1G43170.1; AT1G43170. [P17094-1]
AT1G43170.2; AT1G43170.2; AT1G43170. [P17094-1]
AT1G43170.3; AT1G43170.3; AT1G43170. [P17094-1]
AT1G43170.5; AT1G43170.5; AT1G43170. [P17094-1]
AT1G43170.6; AT1G43170.6; AT1G43170. [P17094-1]
AT1G43170.7; AT1G43170.7; AT1G43170. [P17094-1]
AT1G43170.8; AT1G43170.8; AT1G43170. [P17094-1]
AT1G43170.9; AT1G43170.9; AT1G43170. [P17094-1]
GeneIDi840916.
KEGGiath:AT1G43170.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M32654 mRNA. Translation: AAA66160.1.
AC005687 Genomic DNA. Translation: AAC36018.1.
CP002684 Genomic DNA. Translation: AEE31951.1.
CP002684 Genomic DNA. Translation: AEE31952.1.
CP002684 Genomic DNA. Translation: AEE31953.1.
CP002684 Genomic DNA. Translation: AEE31955.1.
CP002684 Genomic DNA. Translation: AEE31956.1.
CP002684 Genomic DNA. Translation: AEE31957.1.
CP002684 Genomic DNA. Translation: AEE31958.1.
CP002684 Genomic DNA. Translation: AEE31959.1.
AY057487 mRNA. Translation: AAL09721.1.
AF327421 mRNA. Translation: AAG42011.1.
AF361101 mRNA. Translation: AAK27726.1.
AF361809 mRNA. Translation: AAK32822.1.
AY039544 mRNA. Translation: AAK62599.1.
AY052743 mRNA. Translation: AAK96457.1.
Z25950 mRNA. Translation: CAA81111.1.
PIRiE96498.
JQ0771.
RefSeqiNP_001031146.1. NM_001036069.1. [P17094-1]
NP_001185148.1. NM_001198219.1. [P17094-1]
NP_001185149.1. NM_001198220.1. [P17094-1]
NP_001185150.1. NM_001198221.1. [P17094-1]
NP_001185151.1. NM_001198222.1. [P17094-1]
NP_001185152.1. NM_001198223.1. [P17094-1]
NP_175009.1. NM_103469.3. [P17094-1]
NP_973966.1. NM_202237.1. [P17094-1]
UniGeneiAt.21634.
At.24630.
At.48973.
At.7195.

3D structure databases

ProteinModelPortaliP17094.
SMRiP17094. Positions 9-346.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi26141. 14 interactions.
IntActiP17094. 8 interactions.
STRINGi3702.AT1G43170.1.

PTM databases

iPTMnetiP17094.

Proteomic databases

PaxDbiP17094.
PRIDEiP17094.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G43170.1; AT1G43170.1; AT1G43170. [P17094-1]
AT1G43170.2; AT1G43170.2; AT1G43170. [P17094-1]
AT1G43170.3; AT1G43170.3; AT1G43170. [P17094-1]
AT1G43170.5; AT1G43170.5; AT1G43170. [P17094-1]
AT1G43170.6; AT1G43170.6; AT1G43170. [P17094-1]
AT1G43170.7; AT1G43170.7; AT1G43170. [P17094-1]
AT1G43170.8; AT1G43170.8; AT1G43170. [P17094-1]
AT1G43170.9; AT1G43170.9; AT1G43170. [P17094-1]
GeneIDi840916.
KEGGiath:AT1G43170.

Organism-specific databases

TAIRiAT1G43170.

Phylogenomic databases

eggNOGiKOG0746. Eukaryota.
COG0087. LUCA.
InParanoidiP17094.
KOiK02925.
OMAiSPTEGME.
PhylomeDBiP17094.

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiP17094.

Gene expression databases

ExpressionAtlasiP17094. baseline and differential.
GenevisibleiP17094. AT.

Family and domain databases

InterProiIPR000597. Ribosomal_L3.
IPR019926. Ribosomal_L3_CS.
IPR009000. Transl_B-barrel.
[Graphical view]
PfamiPF00297. Ribosomal_L3. 1 hit.
[Graphical view]
SUPFAMiSSF50447. SSF50447. 1 hit.
PROSITEiPS00474. RIBOSOMAL_L3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Two evolutionarily divergent genes encode a cytoplasmic ribosomal protein of Arabidopsis thaliana."
    Kim Y., Zhang H., Scholl R.L.
    Gene 93:177-182(1990) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
  2. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
    Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
    , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
    Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  3. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  4. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  5. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 130-191.
    Strain: cv. Columbia.
    Tissue: Seedling.
  6. "The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome."
    Barakat A., Szick-Miranda K., Chang I.-F., Guyot R., Blanc G., Cooke R., Delseny M., Bailey-Serres J.
    Plant Physiol. 127:398-415(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY ORGANIZATION, NOMENCLATURE.

Entry informationi

Entry nameiRL31_ARATH
AccessioniPrimary (citable) accession number: P17094
Secondary accession number(s): O82401, Q42055, Q93WD0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 1, 1990
Last sequence update: January 23, 2007
Last modified: June 8, 2016
This is version 132 of the entry and version 5 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.