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Protein

60S ribosomal protein L9

Gene

Rpl9

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • cellular response to nerve growth factor stimulus Source: RGD
  • translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-RNO-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-RNO-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-RNO-72689. Formation of a pool of free 40S subunits.
R-RNO-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-RNO-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-RNO-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L9
Gene namesi
Name:Rpl9
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componentsi: Chromosome 1, Chromosome 14, Chromosome 3

Organism-specific databases

RGDi62049. Rpl9.

Subcellular locationi

GO - Cellular componenti

  • cytosolic large ribosomal subunit Source: RGD
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 19219260S ribosomal protein L9PRO_0000131100Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei121 – 1211N6-acetyllysineBy similarity

Keywords - PTMi

Acetylation

Proteomic databases

PaxDbiP17077.
PRIDEiP17077.

PTM databases

iPTMnetiP17077.
PhosphoSiteiP17077.

Expressioni

Gene expression databases

GenevisibleiP17077. RN.

Interactioni

Protein-protein interaction databases

BioGridi247930. 1 interaction.
IntActiP17077. 2 interactions.
STRINGi10116.ENSRNOP00000041817.

Structurei

3D structure databases

ProteinModelPortaliP17077.
SMRiP17077. Positions 1-184.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L6P family.Curated

Phylogenomic databases

eggNOGiKOG3255. Eukaryota.
COG0097. LUCA.
GeneTreeiENSGT00390000015224.
HOGENOMiHOG000039905.
HOVERGENiHBG000942.
InParanoidiP17077.
KOiK02940.
OMAiLRVRKWF.
OrthoDBiEOG7353Z4.
PhylomeDBiP17077.
TreeFamiTF300033.

Family and domain databases

Gene3Di3.90.930.12. 2 hits.
InterProiIPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR002359. Ribosomal_L6_CS2.
[Graphical view]
PANTHERiPTHR11655. PTHR11655. 1 hit.
PfamiPF00347. Ribosomal_L6. 2 hits.
[Graphical view]
PIRSFiPIRSF002162. Ribosomal_L6. 1 hit.
SUPFAMiSSF56053. SSF56053. 2 hits.
PROSITEiPS00700. RIBOSOMAL_L6_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P17077-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKTILSNQTV DIPENVDITL KGRTVIVKGP RGTLRRDFNH INVELSLLGK
60 70 80 90 100
KKKRLRVDKW WGNRKELATV RTICSHVQNM IKGVTLGFRY KMRSVYAHFP
110 120 130 140 150
INVVIQENGS LVEIRNFLGE KYIRRVRMRT GVACSVSQAQ KDELILEGND
160 170 180 190
IELVSNSAAL IQQATTVKNK DIRKFLDGIY VSEKGTVQQP DE
Length:192
Mass (Da):21,893
Last modified:August 1, 1990 - v1
Checksum:i024F3ABA12F77D30
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X51706 mRNA. Translation: CAA36002.1.
BC086561 mRNA. Translation: AAH86561.1.
PIRiJH0222. R5RT9.
RefSeqiNP_001007599.3. NM_001007598.3.
XP_002725578.1. XM_002725532.4.
XP_002729193.1. XM_002729147.2.
XP_003748822.1. XM_003748774.3.
XP_003753735.1. XM_003753687.1.
UniGeneiRn.107914.
Rn.201359.

Genome annotation databases

EnsembliENSRNOT00000038927; ENSRNOP00000032635; ENSRNOG00000026716.
ENSRNOT00000042201; ENSRNOP00000041817; ENSRNOG00000030476.
ENSRNOT00000052231; ENSRNOP00000069650; ENSRNOG00000028449.
ENSRNOT00000076245; ENSRNOP00000068363; ENSRNOG00000026716.
GeneIDi100360449.
100364457.
29257.
KEGGirno:100360449.
rno:100364457.
rno:29257.
UCSCiRGD:62049. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X51706 mRNA. Translation: CAA36002.1.
BC086561 mRNA. Translation: AAH86561.1.
PIRiJH0222. R5RT9.
RefSeqiNP_001007599.3. NM_001007598.3.
XP_002725578.1. XM_002725532.4.
XP_002729193.1. XM_002729147.2.
XP_003748822.1. XM_003748774.3.
XP_003753735.1. XM_003753687.1.
UniGeneiRn.107914.
Rn.201359.

3D structure databases

ProteinModelPortaliP17077.
SMRiP17077. Positions 1-184.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi247930. 1 interaction.
IntActiP17077. 2 interactions.
STRINGi10116.ENSRNOP00000041817.

PTM databases

iPTMnetiP17077.
PhosphoSiteiP17077.

Proteomic databases

PaxDbiP17077.
PRIDEiP17077.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000038927; ENSRNOP00000032635; ENSRNOG00000026716.
ENSRNOT00000042201; ENSRNOP00000041817; ENSRNOG00000030476.
ENSRNOT00000052231; ENSRNOP00000069650; ENSRNOG00000028449.
ENSRNOT00000076245; ENSRNOP00000068363; ENSRNOG00000026716.
GeneIDi100360449.
100364457.
29257.
KEGGirno:100360449.
rno:100364457.
rno:29257.
UCSCiRGD:62049. rat.

Organism-specific databases

CTDi6133.
RGDi62049. Rpl9.

Phylogenomic databases

eggNOGiKOG3255. Eukaryota.
COG0097. LUCA.
GeneTreeiENSGT00390000015224.
HOGENOMiHOG000039905.
HOVERGENiHBG000942.
InParanoidiP17077.
KOiK02940.
OMAiLRVRKWF.
OrthoDBiEOG7353Z4.
PhylomeDBiP17077.
TreeFamiTF300033.

Enzyme and pathway databases

ReactomeiR-RNO-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-RNO-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-RNO-72689. Formation of a pool of free 40S subunits.
R-RNO-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-RNO-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-RNO-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

NextBioi608568.
PROiP17077.

Gene expression databases

GenevisibleiP17077. RN.

Family and domain databases

Gene3Di3.90.930.12. 2 hits.
InterProiIPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR002359. Ribosomal_L6_CS2.
[Graphical view]
PANTHERiPTHR11655. PTHR11655. 1 hit.
PfamiPF00347. Ribosomal_L6. 2 hits.
[Graphical view]
PIRSFiPIRSF002162. Ribosomal_L6. 1 hit.
SUPFAMiSSF56053. SSF56053. 2 hits.
PROSITEiPS00700. RIBOSOMAL_L6_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The primary structure of rat ribosomal protein L9."
    Suzuki K., Olvera J., Wool I.G.
    Gene 93:297-300(1990) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], PROTEIN SEQUENCE OF 1-45.
    Strain: Sprague-Dawley.
    Tissue: Liver.
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Ovary.

Entry informationi

Entry nameiRL9_RAT
AccessioniPrimary (citable) accession number: P17077
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 1, 1990
Last sequence update: August 1, 1990
Last modified: May 11, 2016
This is version 120 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.