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Protein

60S ribosomal protein L9

Gene

Rpl9

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • cellular response to nerve growth factor stimulus Source: RGD
  • cytoplasmic translation Source: GO_Central

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L9
Gene namesi
Name:Rpl9
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componentsi: Chromosome 1, Chromosome 14, Chromosome 3

Organism-specific databases

RGDi62049. Rpl9.

Subcellular locationi

GO - Cellular componenti

  • cytosolic large ribosomal subunit Source: RGD

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001311001 – 19260S ribosomal protein L9Add BLAST192

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei121N6-acetyllysineBy similarity1

Keywords - PTMi

Acetylation

Proteomic databases

PaxDbiP17077.
PRIDEiP17077.

PTM databases

iPTMnetiP17077.
PhosphoSitePlusiP17077.

Expressioni

Gene expression databases

BgeeiENSRNOG00000026716.
GenevisibleiP17077. RN.

Interactioni

Protein-protein interaction databases

BioGridi247930. 1 interactor.
IntActiP17077. 2 interactors.
STRINGi10116.ENSRNOP00000041817.

Structurei

3D structure databases

ProteinModelPortaliP17077.
SMRiP17077.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3255. Eukaryota.
COG0097. LUCA.
GeneTreeiENSGT00390000015224.
HOGENOMiHOG000039905.
HOVERGENiHBG000942.
InParanoidiP17077.
KOiK02940.
OMAiWQGGRKH.
OrthoDBiEOG091G0R6Z.
PhylomeDBiP17077.
TreeFamiTF300033.

Family and domain databases

Gene3Di3.90.930.12. 2 hits.
InterProiView protein in InterPro
IPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR002359. Ribosomal_L6_CS2.
PANTHERiPTHR11655. PTHR11655. 1 hit.
PfamiView protein in Pfam
PF00347. Ribosomal_L6. 2 hits.
PIRSFiPIRSF002162. Ribosomal_L6. 1 hit.
SUPFAMiSSF56053. SSF56053. 2 hits.
PROSITEiView protein in PROSITE
PS00700. RIBOSOMAL_L6_2. 1 hit.

Sequencei

Sequence statusi: Complete.

P17077-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKTILSNQTV DIPENVDITL KGRTVIVKGP RGTLRRDFNH INVELSLLGK
60 70 80 90 100
KKKRLRVDKW WGNRKELATV RTICSHVQNM IKGVTLGFRY KMRSVYAHFP
110 120 130 140 150
INVVIQENGS LVEIRNFLGE KYIRRVRMRT GVACSVSQAQ KDELILEGND
160 170 180 190
IELVSNSAAL IQQATTVKNK DIRKFLDGIY VSEKGTVQQP DE
Length:192
Mass (Da):21,893
Last modified:August 1, 1990 - v1
Checksum:i024F3ABA12F77D30
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X51706 mRNA. Translation: CAA36002.1.
BC086561 mRNA. Translation: AAH86561.1.
PIRiJH0222. R5RT9.
RefSeqiNP_001007599.3. NM_001007598.3.
XP_002725578.1. XM_002725532.5.
XP_002729193.1. XM_002729147.2.
XP_003748822.1. XM_003748774.4.
XP_003753735.1. XM_003753687.1.
UniGeneiRn.107914.
Rn.201359.

Genome annotation databases

EnsembliENSRNOT00000038927; ENSRNOP00000032635; ENSRNOG00000026716.
ENSRNOT00000042201; ENSRNOP00000041817; ENSRNOG00000030476.
ENSRNOT00000052231; ENSRNOP00000069650; ENSRNOG00000028449.
ENSRNOT00000076245; ENSRNOP00000068363; ENSRNOG00000026716.
GeneIDi100360449.
100364457.
29257.
KEGGirno:100360449.
rno:100364457.
rno:29257.
UCSCiRGD:62049. rat.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRL9_RAT
AccessioniPrimary (citable) accession number: P17077
Entry historyiIntegrated into UniProtKB/Swiss-Prot: August 1, 1990
Last sequence update: August 1, 1990
Last modified: June 7, 2017
This is version 130 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families