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P16993

- NCAP_BUNGE

UniProt

P16993 - NCAP_BUNGE

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Protein

Nucleoprotein

Gene

N

Organism
Bunyavirus germiston
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Encapsidates the genome protecting it from nucleases. The encapsidated genomic RNA is termed the nucleocapsid (NC) and serves as template for transcription and replication. Seems to participate in the nuclear relocalization of host PABP1, thereby inhibiting host cellular translation (By similarity).By similarity

GO - Molecular functioni

  1. RNA binding Source: UniProtKB-KW

GO - Biological processi

  1. suppression by virus of host gene expression Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein

Keywords - Biological processi

Eukaryotic host gene expression shutoff by virus, Eukaryotic host translation shutoff by virus, Host gene expression shutoff by virus, Host-virus interaction

Keywords - Ligandi

RNA-binding, Viral nucleoprotein

Names & Taxonomyi

Protein namesi
Recommended name:
Nucleoprotein
Alternative name(s):
Nucleocapsid protein
Short name:
Protein N
Gene namesi
Name:N
OrganismiBunyavirus germiston
Taxonomic identifieri11574 [NCBI]
Taxonomic lineageiVirusesssRNA negative-strand virusesBunyaviridaeOrthobunyavirus
Virus hostiCulex [TaxID: 53527]

Subcellular locationi

Virion
Note: Internal protein of virus particle.

GO - Cellular componenti

  1. helical viral capsid Source: UniProtKB-KW
  2. ribonucleoprotein complex Source: UniProtKB-KW
  3. viral nucleocapsid Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Capsid protein, Helical capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 233233NucleoproteinPRO_0000221989Add
BLAST

Interactioni

Subunit structurei

Homomultimerizes to form the nucleocapsid. Binds to viral genomic RNA. Interacts with host PABP1.By similarity

Family & Domainsi

Sequence similaritiesi

Family and domain databases

InterProiIPR001784. Bunya_nucleocap.
[Graphical view]
PfamiPF00952. Bunya_nucleocap. 1 hit.
[Graphical view]
PIRSFiPIRSF003947. N_OrthobunV. 1 hit.
ProDomiPD001909. Bunya_nucleocap. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative initiation. Align

Isoform N (identifier: P16993-1) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MLELEFEDVP NNIGSTFDPE SGYTNFQRNY LPGVTLDQIR IFYIKGREIK
60 70 80 90 100
NSLSKRSEWE VTLNLGGWKV PVLNTNFPGN RNNAVPDYGL TFHRISGYLA
110 120 130 140 150
RYLLGKYLAE TEPEKLIMRT KIVNPLAEKN GITWESGPEV YLSFFPGAEM
160 170 180 190 200
FLGTFRFYPL AIGIYKVQRK EMDPKFLEKT MRQRYLGIDA QTWTTTKLGE
210 220 230
VEAALKVVSG LGWKKTNVSS AAREFLSKFG IRM
Length:233
Mass (Da):26,703
Last modified:August 1, 1990 - v1
Checksum:i56456B22F30E2185
GO
Isoform NSS (identifier: P16992-1) [UniParc]FASTAAdd to Basket

The sequence of this isoform can be found in the external entry P16992.
Isoforms of the same protein are often annotated in two different entries if their sequences differ significantly.

Note: Produced by alternative initiation in the N gene, but encoded on another frame.

Length:109
Mass (Da):11,891
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
M19420 Genomic RNA. Translation: AAA87603.1.

Keywords - Coding sequence diversityi

Alternative initiation

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
M19420 Genomic RNA. Translation: AAA87603.1 .

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Family and domain databases

InterProi IPR001784. Bunya_nucleocap.
[Graphical view ]
Pfami PF00952. Bunya_nucleocap. 1 hit.
[Graphical view ]
PIRSFi PIRSF003947. N_OrthobunV. 1 hit.
ProDomi PD001909. Bunya_nucleocap. 1 hit.
[Graphical view ] [Entries sharing at least one domain ]
ProtoNeti Search...

Publicationsi

  1. "The S segment of the Germiston virus RNA genome can code for three proteins."
    Gerbaud S., Vialat P., Pardigon N., Wychowski C., Girard M., Bouloy M.
    Virus Res. 8:1-13(1987) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Entry informationi

Entry nameiNCAP_BUNGE
AccessioniPrimary (citable) accession number: P16993
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 1, 1990
Last sequence update: August 1, 1990
Last modified: October 1, 2014
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3