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P16970

- ABCD3_RAT

UniProt

P16970 - ABCD3_RAT

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Protein

ATP-binding cassette sub-family D member 3

Gene
Abcd3, Pmp70, Pxmp1
Organism
Rattus norvegicus (Rat)
Status
Reviewed - Annotation score: 5 out of 5 - Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi473 – 4808ATP Reviewed prediction

GO - Molecular functioni

  1. ATPase activity, coupled to transmembrane movement of substances Source: RGD
  2. ATP binding Source: RGD
  3. protein binding Source: RGD
  4. protein self-association Source: RGD

GO - Biological processi

  1. peroxisomal long-chain fatty acid import Source: RGD
  2. response to drug Source: RGD
  3. response to organic cyclic compound Source: RGD
Complete GO annotation...

Keywords - Biological processi

Transport

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
ATP-binding cassette sub-family D member 3
Alternative name(s):
70 kDa peroxisomal membrane protein
Short name:
PMP70
Gene namesi
Name:Abcd3
Synonyms:Pmp70, Pxmp1
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Unplaced

Organism-specific databases

RGDi2007. Abcd3.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei84 – 10421Helical; Reviewed predictionAdd
BLAST
Transmembranei126 – 14621Helical; Reviewed predictionAdd
BLAST
Transmembranei224 – 24421Helical; Reviewed predictionAdd
BLAST
Transmembranei313 – 33321Helical; Reviewed predictionAdd
BLAST

GO - Cellular componenti

  1. integral component of membrane Source: RGD
  2. mitochondrion Source: UniProtKB
  3. peroxisomal membrane Source: HGNC
  4. peroxisome Source: UniProtKB
Complete GO annotation...

Keywords - Cellular componenti

Membrane, Peroxisome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11Removed1 Publication
Chaini2 – 659658ATP-binding cassette sub-family D member 3PRO_0000093311Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi12 – 121N-linked (GlcNAc...) Reviewed prediction
Modified residuei61 – 611N6-acetyllysine By similarity
Glycosylationi106 – 1061N-linked (GlcNAc...) Reviewed prediction
Glycosylationi206 – 2061N-linked (GlcNAc...) Reviewed prediction
Modified residuei260 – 2601N6-acetyllysine By similarity
Modified residuei399 – 3991N6-acetyllysine By similarity
Modified residuei533 – 5331N6-acetyllysine By similarity
Modified residuei659 – 6591Phosphoserine By similarity

Keywords - PTMi

Acetylation, Glycoprotein, Phosphoprotein

Proteomic databases

PaxDbiP16970.
PRIDEiP16970.

PTM databases

PhosphoSiteiP16970.

Expressioni

Gene expression databases

GenevestigatoriP16970.

Interactioni

Subunit structurei

Homodimer or heterodimer Reviewed prediction. Interacts with PEX19 By similarity.

Protein-protein interaction databases

BioGridi247310. 2 interactions.
STRINGi10116.ENSRNOP00000016739.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini85 – 372288ABC transmembrane type-1Add
BLAST
Domaini434 – 659226ABC transporterAdd
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni2 – 199198Interaction with PEX19 By similarityAdd
BLAST
Regioni2 – 124123Targeting to peroxisomes By similarityAdd
BLAST

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiCOG4178.
HOGENOMiHOG000206081.
HOVERGENiHBG050438.
InParanoidiP16970.
KOiK05677.
PhylomeDBiP16970.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR003593. AAA+_ATPase.
IPR011527. ABC1_TM_dom.
IPR010509. ABC_Peroxi_TM.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR005283. FA_transporter.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF06472. ABC_membrane_2. 1 hit.
PF00005. ABC_tran. 1 hit.
[Graphical view]
SMARTiSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
SSF90123. SSF90123. 1 hit.
TIGRFAMsiTIGR00954. 3a01203. 1 hit.
PROSITEiPS50929. ABC_TM1F. 1 hit.
PS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P16970-1 [UniParc]FASTAAdd to Basket

« Hide

MAAFSKYLTA RNSSLAGAAF LLFCLLHKRR RALGLHGKKS GKPPLQNNEK    50
EGKKERAVVD KVFLSRLSQI LKIMVPRTFC KETGYLILIA VMLVSRTYCD 100
VWMIQNGTLI ESGIIGRSSK DFKRYLFNFI AAMPLISLVN NFLKYGLNEL 150
KLCFRVRLTR YLYEEYLQAF TYYKMGNLDN RIANPDQLLT QDVEKFCNSV 200
VDLYSNLSKP FLDIVLYIFK LTSAIGAQGP ASMMAYLLVS GLFLTRLRRP 250
IGKMTIMEQK YEGEYRFVNS RLITNSEEIA FYNGNKREKQ TIHSVFRKLV 300
EHLHNFIFFR FSMGFIDSII AKYIATVVGY LVVSRPFLDL AHPRHLHSTH 350
SELLEDYYQS GRMLLRMSQA LGRIVLAGRE MTRLAGFTAR ITELMQVLKD 400
LNHGKYERTM VSQQDKGIEG AQASPLIPGA GEIINADNII KFDHVPLATP 450
NGDILIQDLS FEVRSGANVL ICGPNGCGKS SLFRVLGELW PLFGGHLTKP 500
ERGKLFYVPQ RPYMTLGTLR DQVIYPDGKE DQKKKGISDQ VLKGYLDNVQ 550
LGHILEREGG WDSVQDWMDV LSGGEKQRMA MARLFYHKPQ FAILDECTSA 600
VSVDVEDYIY SHCRKVGITL FTVSHRKSLW KHHEYYLHMD GRGNYEFKKI 650
TEDTVEFGS 659
Length:659
Mass (Da):75,316
Last modified:January 23, 2007 - v3
Checksum:iCA567F3DBE80B169
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
D90038 mRNA. Translation: BAA14086.1.
PIRiA35723.
RefSeqiNP_036936.1. NM_012804.1.
UniGeneiRn.7024.

Genome annotation databases

GeneIDi25270.
KEGGirno:25270.
UCSCiRGD:2007. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
D90038 mRNA. Translation: BAA14086.1 .
PIRi A35723.
RefSeqi NP_036936.1. NM_012804.1.
UniGenei Rn.7024.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 247310. 2 interactions.
STRINGi 10116.ENSRNOP00000016739.

PTM databases

PhosphoSitei P16970.

Proteomic databases

PaxDbi P16970.
PRIDEi P16970.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 25270.
KEGGi rno:25270.
UCSCi RGD:2007. rat.

Organism-specific databases

CTDi 5825.
RGDi 2007. Abcd3.

Phylogenomic databases

eggNOGi COG4178.
HOGENOMi HOG000206081.
HOVERGENi HBG050438.
InParanoidi P16970.
KOi K05677.
PhylomeDBi P16970.

Miscellaneous databases

NextBioi 605953.
PROi P16970.

Gene expression databases

Genevestigatori P16970.

Family and domain databases

Gene3Di 3.40.50.300. 1 hit.
InterProi IPR003593. AAA+_ATPase.
IPR011527. ABC1_TM_dom.
IPR010509. ABC_Peroxi_TM.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR005283. FA_transporter.
IPR027417. P-loop_NTPase.
[Graphical view ]
Pfami PF06472. ABC_membrane_2. 1 hit.
PF00005. ABC_tran. 1 hit.
[Graphical view ]
SMARTi SM00382. AAA. 1 hit.
[Graphical view ]
SUPFAMi SSF52540. SSF52540. 1 hit.
SSF90123. SSF90123. 1 hit.
TIGRFAMsi TIGR00954. 3a01203. 1 hit.
PROSITEi PS50929. ABC_TM1F. 1 hit.
PS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The 70-kDa peroxisomal membrane protein is a member of the Mdr (P-glycoprotein)-related ATP-binding protein superfamily."
    Kamijo K., Taketani S., Yokota S., Osumi T., Hashimoto T.
    J. Biol. Chem. 265:4534-4540(1990) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], PARTIAL PROTEIN SEQUENCE.
    Strain: Wistar.
    Tissue: Liver.
  2. "Alkaline density gradient floatation of membranes: polypeptide composition of the mammalian peroxisomal membrane."
    Gouveia A.M.M., Reguenga C., Oliveira M.E.M., Eckerskorn C., Sa-Miranda C., Azevedo J.E.
    Anal. Biochem. 274:270-277(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 2-15 AND 283-296.
    Tissue: Liver.

Entry informationi

Entry nameiABCD3_RAT
AccessioniPrimary (citable) accession number: P16970
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 1, 1990
Last sequence update: January 23, 2007
Last modified: June 11, 2014
This is version 130 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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