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Protein

Protein RhsD

Gene

rhsD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Rhs elements have a nonessential function. They may play an important role in the natural ecology of the cell.

GO - Biological processi

  • cellular response to sulfur starvation Source: EcoCyc
  • self proteolysis Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:EG10849-MONOMER.
ECOL316407:JW0486-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein RhsD
Gene namesi
Name:rhsD
Ordered Locus Names:b0497, JW0486
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG10849. rhsD.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000222281 – 1426Protein RhsDAdd BLAST1426

Proteomic databases

PaxDbiP16919.
PRIDEiP16919.

Expressioni

Inductioni

Repressed by H-NS, induced by LeuO. Part of the rhsD-ybbC operon.1 Publication

Interactioni

Protein-protein interaction databases

BioGridi4259865. 299 interactors.
DIPiDIP-10702N.
IntActiP16919. 18 interactors.
MINTiMINT-1244837.
STRINGi511145.b0497.

Structurei

3D structure databases

ProteinModelPortaliP16919.
SMRiP16919.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domaini

Each rhs appears to consist of a highly conserved 141 kDa amino fragment followed by a highly divergent C-terminus.

Sequence similaritiesi

Belongs to the RHS family.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiENOG4105CNA. Bacteria.
COG3209. LUCA.
HOGENOMiHOG000225201.
InParanoidiP16919.
OMAiAVYYGYD.
PhylomeDBiP16919.

Family and domain databases

InterProiIPR025479. DUF4329.
IPR001826. RHS.
IPR022385. Rhs_assc_core.
IPR031325. RHS_repeat.
IPR006530. YD.
[Graphical view]
PfamiPF14220. DUF4329. 1 hit.
PF03527. RHS. 1 hit.
PF05593. RHS_repeat. 6 hits.
[Graphical view]
PRINTSiPR00394. RHSPROTEIN.
TIGRFAMsiTIGR03696. Rhs_assc_core. 1 hit.
TIGR01643. YD_repeat_2x. 7 hits.

Sequencei

Sequence statusi: Complete.

P16919-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSGKPAARQG DMTQYGGPIV QGSAGVRIGA PTGVACSVCP GGMTSGNPVN
60 70 80 90 100
PLLGAKVLPG ETDLALPGPL PFILSRTYSS YRTKTPAPVG VFGPGWKAPS
110 120 130 140 150
DIRLQLRDDG LILNDNGGRS IHFEPLLPGE AVYSRSESMW LVRGGKAAQP
160 170 180 190 200
DGHTLARLWG ALPPDIRLSP HLYLATNSAQ GPWWILGWSE RVPGAEDVLP
210 220 230 240 250
APLPPYRVLT GMADRFGRTL TYRREAAGDL AGEITGVTDG AGREFRLVLT
260 270 280 290 300
TQAQRAEEAR TSSLSSSDSS RPLSASAFPD TLPGTEYGPD RGIRLSAVWL
310 320 330 340 350
MHDPAYPESL PAAPLVRYTY TEAGELLAVY DRSNTQVRAF TYDAQHPGRM
360 370 380 390 400
VAHRYAGRPE MRYRYDDTGR VVEQLNPAGL SYRYLYEQDR ITVTDSLNRR
410 420 430 440 450
EVLHTEGGAG LKRVVKKELA DGSVTRSGYD AAGRLTAQTD AAGRRTEYGL
460 470 480 490 500
NVVSGDITDI TTPDGRETKF YYNDGNQLTA VVSPDGLESR REYDEPGRLV
510 520 530 540 550
SETSRSGETV RYRYDDAHSE LPATTTDATG STRQMTWSRY GQLLAFTDCS
560 570 580 590 600
GYQTRYEYDR FGQMTAVHRE EGISLYRRYD NRGRLTSVKD AQGRETRYEY
610 620 630 640 650
NAAGDLTAVI TPDGNRSETQ YDAWGKAVST TQGGLTRSME YDAAGRVISL
660 670 680 690 700
TNENGSHSVF SYDALDRLVQ QGGFDGRTQR YHYDLTGKLT QSEDEGLVIL
710 720 730 740 750
WYYDESDRIT HRTVNGEPAE QWQYDGHGWL TDISHLSEGH RVAVHYGYDD
760 770 780 790 800
KGRLTGECQT VENPETGELL WQHETKHAYN EQGLANRVTP DSLPPVEWLT
810 820 830 840 850
YGSGYLAGMK LGGTPLVEYT RDRLHRETVR SFGSMAGSNA AYELTSTYTP
860 870 880 890 900
AGQLQSQHLN SLVYDRDYGW SDNGDLVRIS GPRQTREYGY SATGRLESVR
910 920 930 940 950
TLAPDLDIRI PYATDPAGNR LPDPELHPDS TLTVWPDNRI AEDAHYVYRH
960 970 980 990 1000
DEYGRLTEKT DRIPAGVIRT DDERTHHYHY DSQHRLVFYT RIQHGEPLVE
1010 1020 1030 1040 1050
SRYLYDPLGR RMAKRVWRRE RDLTGWMSLS RKPEVTWYGW DGDRLTTVQT
1060 1070 1080 1090 1100
DTTRIQTVYE PGSFTPLIRV ETENGEREKA QRRSLAETLQ QEGSENGHGV
1110 1120 1130 1140 1150
VFPAELVRLL DRLEEEIRAD RVSSESRAWL AQCGLTVEQL ARQVEPEYTP
1160 1170 1180 1190 1200
ARKAHLYHCD HRGLPLALIS EDGNTAWSAE YDEWGNQLNE ENPHHVYQPY
1210 1220 1230 1240 1250
RLPGQQHDEE SGLYYNRHRY YDPLQGRYIT QDPMGLKGGW NLYQYPLNPL
1260 1270 1280 1290 1300
QQIDPMGLLQ TWDDARSGAC TGGVCGVLSR IIGPSKFDST ADAALDALKE
1310 1320 1330 1340 1350
TQNRSLCNDM EYSGIVCKDT NGKYFASKAE TDNLRKESYP LKRKCPTGTD
1360 1370 1380 1390 1400
RVAAYHTHGA DSHGDYVDEF FSSSDKNLVR SKDNNLEAFY LATPDGRFEA
1410 1420
LNNKGEYIFI RNSVPGLSSV CIPYHD
Length:1,426
Mass (Da):159,725
Last modified:December 15, 1998 - v3
Checksum:i122D697AA449BC2F
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti379G → A (PubMed:1766878).Curated1
Sequence conflicti1167A → G (PubMed:1766878).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X60999 Genomic DNA. Translation: CAA43314.1.
U82664 Genomic DNA. Translation: AAB40251.1.
U00096 Genomic DNA. Translation: AAC73599.1.
AP009048 Genomic DNA. Translation: BAE76276.1.
AF044500 Genomic DNA. Translation: AAC32467.1.
PIRiH64780.
RefSeqiNP_415030.1. NC_000913.3.
WP_000014739.1. NZ_CP014272.1.

Genome annotation databases

EnsemblBacteriaiAAC73599; AAC73599; b0497.
BAE76276; BAE76276; BAE76276.
GeneIDi945116.
KEGGiecj:JW0486.
eco:b0497.
PATRICi32116153. VBIEscCol129921_0518.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X60999 Genomic DNA. Translation: CAA43314.1.
U82664 Genomic DNA. Translation: AAB40251.1.
U00096 Genomic DNA. Translation: AAC73599.1.
AP009048 Genomic DNA. Translation: BAE76276.1.
AF044500 Genomic DNA. Translation: AAC32467.1.
PIRiH64780.
RefSeqiNP_415030.1. NC_000913.3.
WP_000014739.1. NZ_CP014272.1.

3D structure databases

ProteinModelPortaliP16919.
SMRiP16919.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259865. 299 interactors.
DIPiDIP-10702N.
IntActiP16919. 18 interactors.
MINTiMINT-1244837.
STRINGi511145.b0497.

Proteomic databases

PaxDbiP16919.
PRIDEiP16919.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73599; AAC73599; b0497.
BAE76276; BAE76276; BAE76276.
GeneIDi945116.
KEGGiecj:JW0486.
eco:b0497.
PATRICi32116153. VBIEscCol129921_0518.

Organism-specific databases

EchoBASEiEB0842.
EcoGeneiEG10849. rhsD.

Phylogenomic databases

eggNOGiENOG4105CNA. Bacteria.
COG3209. LUCA.
HOGENOMiHOG000225201.
InParanoidiP16919.
OMAiAVYYGYD.
PhylomeDBiP16919.

Enzyme and pathway databases

BioCyciEcoCyc:EG10849-MONOMER.
ECOL316407:JW0486-MONOMER.

Miscellaneous databases

PROiP16919.

Family and domain databases

InterProiIPR025479. DUF4329.
IPR001826. RHS.
IPR022385. Rhs_assc_core.
IPR031325. RHS_repeat.
IPR006530. YD.
[Graphical view]
PfamiPF14220. DUF4329. 1 hit.
PF03527. RHS. 1 hit.
PF05593. RHS_repeat. 6 hits.
[Graphical view]
PRINTSiPR00394. RHSPROTEIN.
TIGRFAMsiTIGR03696. Rhs_assc_core. 1 hit.
TIGR01643. YD_repeat_2x. 7 hits.
ProtoNetiSearch...

Entry informationi

Entry nameiRHSD_ECOLI
AccessioniPrimary (citable) accession number: P16919
Secondary accession number(s): P77232, Q2MBT0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 1, 1990
Last sequence update: December 15, 1998
Last modified: November 2, 2016
This is version 129 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.