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Protein

Protein RhsC

Gene

rhsC

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Rhs elements have a nonessential function. They may play an important role in the natural ecology of the cell.

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:EG10848-MONOMER.
ECOL316407:JW0689-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein RhsC
Gene namesi
Name:rhsC
Ordered Locus Names:b0700, JW0689
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG10848. rhsC.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 13971397Protein RhsCPRO_0000022227Add
BLAST

Proteomic databases

PaxDbiP16918.
PRIDEiP16918.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
ppiBP238694EBI-546818,EBI-555935

Protein-protein interaction databases

DIPiDIP-10701N.
IntActiP16918. 33 interactions.
MINTiMINT-1305459.
STRINGi511145.b0700.

Structurei

3D structure databases

ProteinModelPortaliP16918.
SMRiP16918. Positions 48-107, 386-496, 529-707.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati330 – 352231Add
BLAST
Repeati353 – 374222Add
BLAST
Repeati375 – 417433Add
BLAST
Repeati418 – 438214Add
BLAST
Repeati439 – 460225Add
BLAST
Repeati461 – 481216Add
BLAST
Repeati482 – 502217Add
BLAST
Repeati503 – 525238Add
BLAST
Repeati526 – 546219Add
BLAST
Repeati547 – 5672110Add
BLAST
Repeati568 – 5882111Add
BLAST
Repeati589 – 6092112Add
BLAST
Repeati610 – 6292013Add
BLAST
Repeati630 – 6502114Add
BLAST
Repeati651 – 6712115Add
BLAST
Repeati672 – 6912016Add
BLAST
Repeati692 – 7112017Add
BLAST
Repeati712 – 7342318Add
BLAST
Repeati735 – 7582419Add
BLAST
Repeati808 – 8282120Add
BLAST
Repeati829 – 8502221Add
BLAST
Repeati851 – 8712122Add
BLAST
Repeati872 – 8942323Add
BLAST
Repeati895 – 9303624Add
BLAST
Repeati931 – 9592925Add
BLAST
Repeati960 – 9842526Add
BLAST
Repeati985 – 10193527Add
BLAST
Repeati1162 – 11862528Add
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni330 – 118685728 X approximate tandem repeatsAdd
BLAST

Domaini

Each rhs appears to consist of a highly conserved 141 kDa amino fragment followed by a highly divergent C-terminus.

Sequence similaritiesi

Belongs to the RHS family.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiENOG4105CNA. Bacteria.
COG3209. LUCA.
HOGENOMiHOG000225201.
InParanoidiP16918.
OMAiAATHQKY.
OrthoDBiEOG693GJV.
PhylomeDBiP16918.

Family and domain databases

InterProiIPR001826. RHS.
IPR022385. Rhs_assc_core.
IPR031325. RHS_repeat.
IPR006530. YD.
[Graphical view]
PfamiPF03527. RHS. 1 hit.
PF05593. RHS_repeat. 7 hits.
[Graphical view]
PRINTSiPR00394. RHSPROTEIN.
TIGRFAMsiTIGR03696. Rhs_assc_core. 1 hit.
TIGR01643. YD_repeat_2x. 6 hits.

Sequencei

Sequence statusi: Complete.

P16918-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSGKPAARQG DMTQYGGSIV QGSAGVRIGA PTGVACSVCP GGVTSGHPVN
60 70 80 90 100
PLLGAKVLPG ETDIALPGPL PFILSRTYSS YRTKTPAPVG SLGPGWKMPA
110 120 130 140 150
DIRLQLRDNT LILSDNGGRS LYFEHLFPGE DGYSRSESLW LVRGGVAKLD
160 170 180 190 200
EGHRLAALWQ ALPEELRLSP HRYLATNSPQ GPWWLLGWCE RVPEADEVLP
210 220 230 240 250
APLPPYRVLT GLVDRFGRTQ TFHREAAGEF SGEITGVTDG AGRHFRLVLT
260 270 280 290 300
TQAQRAEEAR QQAISGGTEP SAFPDTLPGY TEYGRDNGIR LSAVWLTHDP
310 320 330 340 350
EYPENLPAAP LVRYGWTPRG ELAAVYDRSN TQVRSFTYDD KYRGRMVAHR
360 370 380 390 400
HTGRPEICYR YDSDGRVTEQ LNPAGLSYTY QYEKDRITIT DSLNRREVLH
410 420 430 440 450
TQGEGGLKRV VKKEHADGSV TQSQFDAVGR LRAQTDAAGR TTEYSPDVVT
460 470 480 490 500
GLITRITTPD GRASAFYYNH HSQLTSATGP DGLEIRREYD EWGRLIQETA
510 520 530 540 550
PDGDITRYRY DNPHSDLPCA TEDATGSRKT MTWSRYGQLL SFTDCSGYVT
560 570 580 590 600
RYDHDRFGQV TAVHREEGLS QYRAYDSRGQ LIAVKDTQGH ETRYEYNAAG
610 620 630 640 650
DLTTVIAPDG SRNGTQYDAW GKAICTTQGG LTRSMEYDAA GRVIRLTSEN
660 670 680 690 700
GSHTTFRYDV LDRLIQETGF DGRTQRYHHD LTGKLIRSED EGLVTHWHYD
710 720 730 740 750
EADRLTHRTV NGETAERWQY DERGWLTDIS HISEGHRVTV HYGYDSKGRL
760 770 780 790 800
ASEHLTVHHP QTNELLWQHE TRHAYNAQGL ANRCIPDSLP AVEWLTYGSG
810 820 830 840 850
WLSGMKLGDT PLVEYTRDRL HRETLRSFGR YELTTAYTPA GQLQSQHLNS
860 870 880 890 900
LLSDRDYTWN DNGELIRISS PRQTRSYSYS TTGRLTGVHT TAANLDIRIP
910 920 930 940 950
YTTDPAGNRL PDPELHPDSA LSMWPDNRIA RDAHYLYRYD RHGRLTEKTD
960 970 980 990 1000
LIPEGVIRTD DERTHRYHYD SQHRLVHYTR TQYAEPLVES RYLYDPLGRR
1010 1020 1030 1040 1050
VAKRVWRRER DLTGWMSLSR KPQVTWYGWD GDRLTTIQND RTRIQTIYQP
1060 1070 1080 1090 1100
GSFTPLIRVE TATGELAKTQ RRSLADTLQQ SGGEDGGSVV FPPVLVQMLD
1110 1120 1130 1140 1150
RLESEILADR VSEESRRWLA SCGLTVAQMQ SQMDPVYTPA RKIHLYHCDH
1160 1170 1180 1190 1200
RGLPLALIST EGTTAWYAEY DEWGNLLNEE NPHQLQQLIR LPGQQYDEES
1210 1220 1230 1240 1250
GLYYNRHRYY DPLQGRYITQ DPIGLKGGWN FYQYPLNPIS NIDPLGLETL
1260 1270 1280 1290 1300
KCIKPLHSMG GTGERSGPDI WGNPFYHQYL CVPDGKGDYT CGGQDQRGES
1310 1320 1330 1340 1350
KGDGLWGPGK ASNDTKEAAG RCDLVETDNS CVENCLKGKF KEVRPRYSVL
1360 1370 1380 1390
PDIFTPINLG LFKNCQDWSN DSLETCKMKC SGNNIGRFIR FVFTGVM
Length:1,397
Mass (Da):157,776
Last modified:November 1, 1997 - v4
Checksum:i0AC56AEE77E15C30
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L19044 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAC73794.1.
AP009048 Genomic DNA. Translation: BAA35359.1.
L02373 Genomic DNA. Translation: AAC63072.1.
PIRiC64805.
E65145.
RefSeqiNP_415229.1. NC_000913.3.
WP_000015200.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73794; AAC73794; b0700.
BAA35359; BAA35359; BAA35359.
GeneIDi945306.
KEGGiecj:JW0689.
eco:b0700.
PATRICi32116597. VBIEscCol129921_0731.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L19044 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAC73794.1.
AP009048 Genomic DNA. Translation: BAA35359.1.
L02373 Genomic DNA. Translation: AAC63072.1.
PIRiC64805.
E65145.
RefSeqiNP_415229.1. NC_000913.3.
WP_000015200.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP16918.
SMRiP16918. Positions 48-107, 386-496, 529-707.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-10701N.
IntActiP16918. 33 interactions.
MINTiMINT-1305459.
STRINGi511145.b0700.

Proteomic databases

PaxDbiP16918.
PRIDEiP16918.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73794; AAC73794; b0700.
BAA35359; BAA35359; BAA35359.
GeneIDi945306.
KEGGiecj:JW0689.
eco:b0700.
PATRICi32116597. VBIEscCol129921_0731.

Organism-specific databases

EchoBASEiEB0841.
EcoGeneiEG10848. rhsC.

Phylogenomic databases

eggNOGiENOG4105CNA. Bacteria.
COG3209. LUCA.
HOGENOMiHOG000225201.
InParanoidiP16918.
OMAiAATHQKY.
OrthoDBiEOG693GJV.
PhylomeDBiP16918.

Enzyme and pathway databases

BioCyciEcoCyc:EG10848-MONOMER.
ECOL316407:JW0689-MONOMER.

Miscellaneous databases

PROiP16918.

Family and domain databases

InterProiIPR001826. RHS.
IPR022385. Rhs_assc_core.
IPR031325. RHS_repeat.
IPR006530. YD.
[Graphical view]
PfamiPF03527. RHS. 1 hit.
PF05593. RHS_repeat. 7 hits.
[Graphical view]
PRINTSiPR00394. RHSPROTEIN.
TIGRFAMsiTIGR03696. Rhs_assc_core. 1 hit.
TIGR01643. YD_repeat_2x. 6 hits.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Rhs elements of Escherichia coli K-12: complex composites of shared and unique components that have different evolutionary histories."
    Zhao S., Sandt C.H., Feulner G., Vlazny D.A., Gray J.A., Hill C.W.
    J. Bacteriol. 175:2799-2808(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: K12.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  5. "rhs gene family of Escherichia coli K-12."
    Sadosky A.B., Davidson A., Lin R.J., Hill C.W.
    J. Bacteriol. 171:636-642(1989) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-100.
    Strain: K12.
  6. "Structure of the rhsA locus from Escherichia coli K-12 and comparison of rhsA with other members of the rhs multigene family."
    Feulner G., Gray J.A., Kirschman J.A., Lehner A.F., Sadosky A.B., Vlazny D.A., Zhang J., Zhao S., Hill C.W.
    J. Bacteriol. 172:446-456(1990) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1221-1397.
    Strain: K12.
  7. "Rhs elements of Escherichia coli: a family of genetic composites each encoding a large mosaic protein."
    Hill C.W., Sandt C.H., Vlazny D.A.
    Mol. Microbiol. 12:865-871(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: REVIEW.

Entry informationi

Entry nameiRHSC_ECOLI
AccessioniPrimary (citable) accession number: P16918
Secondary accession number(s): P77194
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 1, 1990
Last sequence update: November 1, 1997
Last modified: November 11, 2015
This is version 131 of the entry and version 4 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.