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Protein

Coat protein

Gene
N/A
Organism
Clover yellow mosaic virus (CYMV)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Required for genome encapsidation. Forms ribonucleoprotein complexes along with TGB1 helicase and viral RNA.

GO - Molecular functioni

Keywordsi

Molecular functionRibonucleoprotein

Names & Taxonomyi

Protein namesi
Recommended name:
Coat protein
Alternative name(s):
Capsid protein
Short name:
CP
OrganismiClover yellow mosaic virus (CYMV)
Taxonomic identifieri12177 [NCBI]
Taxonomic lineageiVirusesssRNA virusesssRNA positive-strand viruses, no DNA stageTymoviralesAlphaflexiviridaePotexvirus
Virus hostiChenopodium album (Fat-hen) [TaxID: 3559]
Malus pumila (Paradise apple) [TaxID: 283210]
Medicago sativa (Alfalfa) [TaxID: 3879]
Pisum sativum (Garden pea) [TaxID: 3888]
Stellaria media (Common chickweed) (Alsine media) [TaxID: 13274]
Trifolium [TaxID: 3898]
Vicia sativa (Spring vetch) (Tare) [TaxID: 3908]

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Capsid protein, Helical capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002226341 – 212Coat proteinAdd BLAST212

Family & Domainsi

Sequence similaritiesi

Belongs to the potexvirus capsid protein family.Curated

Family and domain databases

InterProiView protein in InterPro
IPR000052. Pltvir_coat.
PfamiView protein in Pfam
PF00286. Flexi_CP. 1 hit.
PRINTSiPR00232. POTXCARLCOAT.
PROSITEiView protein in PROSITE
PS00418. POTEX_CARLAVIRUS_COAT. 1 hit.

Sequencei

Sequence statusi: Complete.

P16486-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTDTKKTLFS APTDEQLDTL TLTIESNLVP SISELEAIAK DWKTLGLQEA
60 70 80 90 100
DFTANAIKIA WFCYHSGSSE SVQVQGNSTS DKIPLYQLAG VVRQHSTLRR
110 120 130 140 150
FCRYFAKVIW NYALRKNQPP ANWASQNYKE ADRFAAFDFF EGVSSSAALS
160 170 180 190 200
PPGGLIREPS PNERMANETN KNVHLYQTAS RGSNLATTST VATKGAYSTN
210
ASNAGFPYHR PE
Length:212
Mass (Da):23,438
Last modified:August 1, 1990 - v1
Checksum:i30D6B8773F5D6E17
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D00485 Genomic RNA. Translation: BAA00375.1.
RefSeqiNP_077083.1. NC_001753.1.

Genome annotation databases

GeneIDi1494004.
KEGGivg:1494004.

Similar proteinsi

Entry informationi

Entry nameiCAPSD_CYMV
AccessioniPrimary (citable) accession number: P16486
Secondary accession number(s): P16484
Entry historyiIntegrated into UniProtKB/Swiss-Prot: August 1, 1990
Last sequence update: August 1, 1990
Last modified: November 30, 2016
This is version 70 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families