Reviewed,
UniProtKB/Swiss-Prot P16234 (PGFRA_HUMAN)
Last modified
June 16, 2009.
Version 110.
History...
Clusters with 100%,
90%,
50% identity |
Documents (8) |
Third-party data |
Customize display | text xml rdf/xml gff fasta |
Names and origin
| Protein names | Recommended name: Alpha-type platelet-derived growth factor receptor EC=2.7.10.1 Alternative name(s): PDGF-R-alpha CD140 antigen-like family member A CD140a antigen CD_antigen=CD140a | ||
| Gene names |
| ||
| Organism | Homo sapiens (Human) | ||
| Taxonomic identifier | 9606 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 1089 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at protein level. |
General annotation (Comments)
| Function | Receptor that binds both PDGFA and PDGFB and has a tyrosine-protein kinase activity. |
| Catalytic activity | ATP + a [protein]-L-tyrosine = ADP + a [protein]-L-tyrosine phosphate. |
| Subunit structure | Homodimer, and heterodimer with PDGFRB. Interacts with the SH2 domain of SHB via phosphorylated Tyr-720 By similarity. Interacts with the SH2 domain of SHF via phosphorylated Tyr-720. |
| Subcellular location | |
| Tissue specificity | Expressed in primary and metastatic colon tumors and in normal colon tissue. Tumors may express a different isoform to that found in normal tissue. |
| Involvement in disease | A fusion of PDGFRA and FIP1L1 (FIP1L1-PDGFRA), due to an interstitial chromosomal deletion, is the cause of some cases of hypereosinophilic syndrome (HES) [MIM:607685]. HES is a rare hematologic disorder characterized by sustained overproduction of eosinophils in the bone marrow, eosinophilia, tissue infiltration and organ damage. Ref.6 |
| Sequence similarities | Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. Contains 5 Ig-like C2-type (immunoglobulin-like) domains. Contains 1 protein kinase domain. |
Ontologies
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: P16234-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: P16234-2) The sequence of this isoform differs from the canonical sequence as follows: 210-218: ATSELDLEM → GTCIISFLL 219-1089: Missing. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||
Molecule processing | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Signal peptide | 1 – 23 | 23 | |||||||||
| Chain | 24 – 1089 | 1066 | Alpha-type platelet-derived growth factor receptor | PRO_0000016760 | |||||||
Regions | |||||||||||
| Topological domain | 24 – 524 | 501 | Extracellular Potential | ||||||||
| Transmembrane | 525 – 549 | 25 | Potential | ||||||||
| Topological domain | 550 – 1089 | 540 | Cytoplasmic Potential | ||||||||
| Domain | 24 – 113 | 90 | Ig-like C2-type 1 | ||||||||
| Domain | 117 – 201 | 85 | Ig-like C2-type 2 | ||||||||
| Domain | 202 – 306 | 105 | Ig-like C2-type 3 | ||||||||
| Domain | 319 – 410 | 92 | Ig-like C2-type 4 | ||||||||
| Domain | 414 – 517 | 104 | Ig-like C2-type 5 | ||||||||
| Domain | 593 – 954 | 362 | Protein kinase | ||||||||
| Nucleotide binding | 599 – 607 | 9 | ATP By similarity | ||||||||
| Compositional bias | 1041 – 1087 | 47 | Ser-rich | ||||||||
Sites | |||||||||||
| Active site | 818 | 1 | Proton acceptor By similarity | ||||||||
| Binding site | 627 | 1 | ATP By similarity | ||||||||
| Site | 578 – 579 | 2 | Breakpoint for interstitial deletion to form the FIP1L1-PDGFRA fusion protein | ||||||||
Amino acid modifications | |||||||||||
| Modified residue | 720 | 1 | Phosphotyrosine Probable | ||||||||
| Modified residue | 762 | 1 | Phosphotyrosine Ref.10 | ||||||||
| Modified residue | 768 | 1 | Phosphotyrosine Ref.10 | ||||||||
| Modified residue | 849 | 1 | Phosphotyrosine; by autocatalysis By similarity | ||||||||
| Modified residue | 1018 | 1 | Phosphotyrosine Ref.10 | ||||||||
| Glycosylation | 42 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 76 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 103 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 179 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 353 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 359 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 458 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 468 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Disulfide bond | 49 ↔ 100 | By similarity | |||||||||
| Disulfide bond | 150 ↔ 189 | By similarity | |||||||||
| Disulfide bond | 235 ↔ 290 | By similarity | |||||||||
| Disulfide bond | 435 ↔ 501 | By similarity | |||||||||
Natural variations | |||||||||||
| Alternative sequence | 210 – 218 | 9 | ATSELDLEM → GTCIISFLL in isoform 2. | VSP_007833 | |||||||
| Alternative sequence | 219 – 1089 | 871 | Missing in isoform 2. | VSP_007834 | |||||||
| Natural variant | 79 | 1 | G → D: dbSNP rs36035373. Ref.12 | VAR_042032 | |||||||
| Natural variant | 426 | 1 | G → D Ref.12 | VAR_042033 | |||||||
| Natural variant | 478 | 1 | S → P: dbSNP rs35597368. Ref.12 Ref.4 | VAR_034378 | |||||||
| Natural variant | 764 | 1 | R → C Ref.12 | VAR_042034 | |||||||
| Natural variant | 829 | 1 | G → R in a glioblastoma multiforme sample; somatic mutation. Ref.12 | VAR_042035 | |||||||
| Natural variant | 996 | 1 | E → K in a metastatic melanoma sample; somatic mutation. Ref.12 | VAR_042036 | |||||||
| Natural variant | 1071 | 1 | D → N in a lung neuroendocrine carcinoma sample; somatic mutation. Ref.12 | VAR_042037 | |||||||
Sequences
| ||||||||||||||||||||||||
References
| « Hide 'large scale' references | |
| [1] | "cDNA cloning and expression of the human A-type platelet-derived growth factor (PDGF) receptor establishes structural similarity to the B-type PDGF receptor." Claesson-Welsh L., Eriksson A., Westermark B., Heldin C.H. Proc. Natl. Acad. Sci. U.S.A. 86:4917-4921(1989) [PubMed: 2544881] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). Tissue: Foreskin. |
| [2] | "Isolation of a novel receptor cDNA establishes the existence of two PDGF receptor genes." Matsui T., Heidaran M., Miki T., Popescu N., la Rochelle W., Kraus M., Pierce J., Aaronson S. Science 243:800-804(1989) [PubMed: 2536956] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). Tissue: Brain. |
| [3] | "Structure, organization, and transcription units of the human alpha-platelet-derived growth factor receptor gene, PDGFRA." Kawagishi J., Ku T. Genomics 30:224-232(1995) [PubMed: 8586421] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. Tissue: Blood. |
| [4] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed: 14702039] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1), VARIANT PRO-478. Tissue: Trachea. |
| [5] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). Tissue: Placenta. |
| [6] | "Discovery of a fusion kinase in EOL-1 cells and idiopathic hypereosinophilic syndrome." Griffin J.H., Leung J., Bruner R.J., Caligiuri M.A., Briesewitz R. Proc. Natl. Acad. Sci. U.S.A. 100:7830-7835(2003) [PubMed: 12808148] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 579-1089, DISEASE, IDENTIFICATION BY MASS SPECTROMETRY OF FIP1L1-PDGFRA FUSION PROTEIN. Tissue: Eosinophil. |
| [7] | "Receptor tyrosine kinases expressed in metastatic colon cancer." Craven R.J., Xu L.H., Weiner T.M., Fridell Y.-W., Dent G.A., Srivastava S., Varnum B., Liu E.T., Cance W.G. Int. J. Cancer 60:791-797(1995) [PubMed: 7896447] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 823-876, TISSUE SPECIFICITY. Tissue: Colon tumor. |
| [8] | "Shf, a Shb-like adapter protein, is involved in PDGF-alpha-receptor regulation of apoptosis." Lindholm C.K., Frantz J.D., Shoelson S.E., Welsh M. Biochem. Biophys. Res. Commun. 278:537-543(2000) [PubMed: 11095946] [Abstract] Cited for: INTERACTION WITH SHF, PROBABLE PHOSPHORYLATION AT TYR-720. |
| [9] | "A tyrosine kinase created by fusion of the PDGFRA and FIP1L1 genes as a therapeutic target of imatinib in idiopathic hypereosinophilic syndrome." Cools J., DeAngelo D.J., Gotlib J., Stover E.H., Legare R.D., Cortes J., Kutok J., Clark J., Galinsky I., Griffin J.D., Cross N.C., Tefferi A., Malone J., Alam R., Schrier S.L., Schmid J., Rose M., Vandenberghe P. Gilliland D.G.N. Engl. J. Med. 348:1201-1214(2003) [PubMed: 12660384] [Abstract] Cited for: INVOLVEMENT IN HES. |
| [10] | "Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer." Rikova K., Guo A., Zeng Q., Possemato A., Yu J., Haack H., Nardone J., Lee K., Reeves C., Li Y., Hu Y., Tan Z., Stokes M., Sullivan L., Mitchell J., Wetzel R., Macneill J., Ren J.M. Comb M.J.Cell 131:1190-1203(2007) [PubMed: 18083107] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-762; TYR-768; TYR-849 AND TYR-1018, MASS SPECTROMETRY. |
| [11] | "Structural determinants of the Na+/H+ exchanger regulatory factor interaction with the beta 2 adrenergic and platelet-derived growth factor receptors." Karthikeyan S., Leung T., Ladias J.A.A. J. Biol. Chem. 277:18973-18978(2002) [PubMed: 11882663] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (2.2 ANGSTROMS) OF 1185-1189 IN COMPLEX WITH SLC9A3R1 AND PDGFRB. |
| [12] | "Patterns of somatic mutation in human cancer genomes." Greenman C., Stephens P., Smith R., Dalgliesh G.L., Hunter C., Bignell G., Davies H., Teague J., Butler A., Stevens C., Edkins S., O'Meara S., Vastrik I., Schmidt E.E., Avis T., Barthorpe S., Bhamra G., Buck G. Stratton M.R.Nature 446:153-158(2007) [PubMed: 17344846] [Abstract] Cited for: VARIANTS [LARGE SCALE ANALYSIS] ASP-79; ASP-426; PRO-478; CYS-764; ARG-829; LYS-996 AND ASN-1071. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| M22734 mRNA. Translation: AAA60048.1. M21574 mRNA. Translation: AAA96715.1. D50017 Genomic DNA. Translation: BAA08742.1. AK316578 mRNA. Translation: BAG38166.1. BC015186 mRNA. Translation: AAH15186.1. AY229892 mRNA. Translation: AAP69563.1. Different initiation. | ||||||||||
| IPI | IPI00027721. IPI00336178. | |||||||||
| PIR | PFHUGA. A40162. | |||||||||
| RefSeq | NP_006197.1. | |||||||||
| UniGene | Hs.74615 | |||||||||
3D structure databases | ||||||||||
| ||||||||||
| ModBase | Search... | |||||||||
Protein-protein interaction databases | ||||||||||
| DIP | DIP:5736N. | |||||||||
PTM databases | ||||||||||
| PhosphoSite | P16234. | |||||||||
Proteomic databases | ||||||||||
| PRIDE | P16234. | |||||||||
Genome annotation databases | ||||||||||
| Ensembl | ENSG00000134853. Homo sapiens. [Contig view] | |||||||||
| GeneID | 5156. | |||||||||
| KEGG | hsa:5156. | |||||||||
Organism-specific databases | ||||||||||
| GeneCards | GC04P054806. | |||||||||
| H-InvDB | HIX0004218. | |||||||||
| HGNC | HGNC:8803. PDGFRA. | |||||||||
| HPA | CAB018143. | |||||||||
| MIM | 173490. gene. 607685. phenotype. | |||||||||
| Orphanet | 44890. Gastrointestinal stromal tumor. 3260. Idiopathic hypereosinophilic syndrome. 513. Leukemia, lymphoblastic, acute. | |||||||||
| PharmGKB | PA33147. | |||||||||
| GenAtlas | Search... | |||||||||
Phylogenomic databases | ||||||||||
| HOGENOM | P16234. | |||||||||
| HOVERGEN | P16234. | |||||||||
| OMA | P16234. VARMRVD. | |||||||||
Enzyme and pathway databases | ||||||||||
| BRENDA | 2.7.10.1. 247. | |||||||||
| Pathway_Interaction_DB | pdgfrapathway. PDGFR-alpha signaling pathway. | |||||||||
Gene expression databases | ||||||||||
| ArrayExpress | P16234. | |||||||||
| Bgee | P16234. | |||||||||
| CleanEx | HS_PDGFRA. | |||||||||
| GermOnline | ENSG00000134853. Homo sapiens. | |||||||||
Family and domain databases | ||||||||||
| InterPro | IPR013151. Ig. IPR007110. Ig-like. IPR013783. Ig-like_fold. IPR013098. Ig_I-set. IPR003599. Ig_sub. IPR003598. Ig_sub2. IPR015776. Platelet-der_grow_fac_rcpt_a. IPR000719. Prot_kinase_core. IPR017441. Protein_kinase_ATP_BS. IPR001824. Recept_tyr_kinase-III_CS. IPR001245. Tyr_pkinase. IPR008266. Tyr_pkinase_AS. IPR016243. TyrPK_CSF1-R. IPR009134. VEGFR_N. [Graphical view] | |||||||||
| Gene3D | G3DSA:2.60.40.10. Ig-like_fold. 2 hits. | |||||||||
| PANTHER | PTHR23256:SF207. PDGFR_alpha. 1 hit. | |||||||||
| Pfam | PF07679. I-set. 1 hit. PF00047. ig. 2 hits. PF07714. Pkinase_Tyr. 1 hit. [Graphical view] | |||||||||
| PIRSF | PIRSF000615. TyrPK_CSF1-R. 1 hit. | |||||||||
| PRINTS | PR01832. VEGFRECEPTOR. | |||||||||
| ProDom | PD000001. Prot_kinase. 2 hits. [Graphical view] [Entries sharing at least one domain] | |||||||||
| SMART | SM00409. IG. 2 hits. SM00408. IGc2. 1 hit. SM00219. TyrKc. 1 hit. [Graphical view] | |||||||||
| PROSITE | PS50835. IG_LIKE. 2 hits. PS00107. PROTEIN_KINASE_ATP. 1 hit. PS50011. PROTEIN_KINASE_DOM. 1 hit. PS00109. PROTEIN_KINASE_TYR. 1 hit. PS00240. RECEPTOR_TYR_KIN_III. 1 hit. [Graphical view] | |||||||||
| ProtoNet | Search... | |||||||||
Other Resources | ||||||||||
| DrugBank | DB00102. Becaplermin. DB00619. Imatinib. DB01268. Sunitinib. | |||||||||
| NextBio | 19946. | |||||||||
| SOURCE | Search... | |||||||||
Entry information
| Entry name | PGFRA_HUMAN | ||||||||
| Accession | Primary (citable) accession number: P16234 Secondary accession number(s): B2RE69, Q96KZ7 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HPI (Human Proteome Initiative) | ||||||||
Relevant documents
| Human cell differentiation molecules CD nomenclature of surface proteins of human leucocytes and list of entries |
| Human chromosome 4 Human chromosome 4: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| Human and mouse protein kinases Human and mouse protein kinases: classification and index |
| SIMILARITY comments Index of protein domains and families |

Clusters with


