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Protein

HLA class I histocompatibility antigen, A-30 alpha chain

Gene

HLA-A

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Involved in the presentation of foreign antigens to the immune system.

GO - Molecular functioni

  • beta-2-microglobulin binding Source: UniProtKB
  • peptide antigen binding Source: UniProtKB
  • TAP binding Source: UniProtKB

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Host-virus interaction, Immunity

Enzyme and pathway databases

ReactomeiR-HSA-1236974. ER-Phagosome pathway.
R-HSA-1236977. Endosomal/Vacuolar pathway.
R-HSA-198933. Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell.
R-HSA-877300. Interferon gamma signaling.
R-HSA-909733. Interferon alpha/beta signaling.
R-HSA-983170. Antigen Presentation: Folding, assembly and peptide loading of class I MHC.

Names & Taxonomyi

Protein namesi
Recommended name:
HLA class I histocompatibility antigen, A-30 alpha chain
Alternative name(s):
MHC class I antigen A*30
Gene namesi
Name:HLA-A
Synonyms:HLAA
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 6

Organism-specific databases

HGNCiHGNC:4931. HLA-A.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini25 – 308ExtracellularSequence analysisAdd BLAST284
Transmembranei309 – 332HelicalSequence analysisAdd BLAST24
Topological domaini333 – 365CytoplasmicSequence analysisAdd BLAST33

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane, MHC I

Pathology & Biotechi

Organism-specific databases

MalaCardsiHLA-A.

Polymorphism and mutation databases

DMDMi1345596.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 24Add BLAST24
ChainiPRO_000001882225 – 365HLA class I histocompatibility antigen, A-30 alpha chainAdd BLAST341

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi110N-linked (GlcNAc...)By similarity1
Disulfide bondi125 ↔ 188PROSITE-ProRule annotation
Disulfide bondi227 ↔ 283PROSITE-ProRule annotation
Modified residuei343PhosphoserineBy similarity1
Modified residuei344PhosphotyrosineBy similarity1
Modified residuei349PhosphoserineBy similarity1
Modified residuei350PhosphoserineBy similarity1
Modified residuei352PhosphoserineCombined sources1
Modified residuei356PhosphoserineCombined sources1
Modified residuei359PhosphoserineCombined sources1

Post-translational modificationi

Polyubiquitinated in a post ER compartment by interaction with human herpesvirus 8 MIR1 protein. This targets the protein for rapid degradation via the ubiquitin system (By similarity).By similarity

Keywords - PTMi

Disulfide bond, Glycoprotein, Phosphoprotein, Ubl conjugation

Proteomic databases

EPDiP16188.
MaxQBiP16188.
PaxDbiP16188.
PeptideAtlasiP16188.
PRIDEiP16188.

PTM databases

iPTMnetiP16188.
SwissPalmiP16188.

Expressioni

Gene expression databases

BgeeiENSG00000206503.
CleanExiHS_HLA-A.
ExpressionAtlasiP16188. baseline and differential.
GenevisibleiP16188. HS.

Interactioni

Subunit structurei

Heterodimer of an alpha chain and a beta chain (beta-2-microglobulin). Interacts with human herpesvirus 8 MIR1 protein (By similarity).By similarity

GO - Molecular functioni

  • beta-2-microglobulin binding Source: UniProtKB
  • TAP binding Source: UniProtKB

Protein-protein interaction databases

IntActiP16188. 1 interactor.
STRINGi9606.ENSP00000366005.

Structurei

3D structure databases

ProteinModelPortaliP16188.
SMRiP16188.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini209 – 295Ig-like C1-typeAdd BLAST87

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni25 – 114Alpha-1Add BLAST90
Regioni115 – 206Alpha-2Add BLAST92
Regioni207 – 298Alpha-3Add BLAST92
Regioni299 – 308Connecting peptide10

Sequence similaritiesi

Belongs to the MHC class I family.Curated

Keywords - Domaini

Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG410II5V. Eukaryota.
ENOG4111K8F. LUCA.
HOVERGENiHBG016709.
TreeFamiTF336617.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
3.30.500.10. 1 hit.
InterProiIPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR003006. Ig/MHC_CS.
IPR003597. Ig_C1-set.
IPR011161. MHC_I-like_Ag-recog.
IPR011162. MHC_I/II-like_Ag-recog.
IPR001039. MHC_I_a_a1/a2.
IPR010579. MHC_I_a_C.
[Graphical view]
PfamiPF07654. C1-set. 1 hit.
PF00129. MHC_I. 1 hit.
PF06623. MHC_I_C. 1 hit.
[Graphical view]
PRINTSiPR01638. MHCCLASSI.
SMARTiSM00407. IGc1. 1 hit.
[Graphical view]
SUPFAMiSSF48726. SSF48726. 1 hit.
SSF54452. SSF54452. 1 hit.
PROSITEiPS50835. IG_LIKE. 1 hit.
PS00290. IG_MHC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P16188-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAVMAPRTLL LLLSGALALT HTWAGSHSMR YFSTSVSRPG SGEPRFIAVG
60 70 80 90 100
YVDDTQFVRF DSDAASQRME PRAPWIEQER PEYWDQETRN VKAQSQTDRV
110 120 130 140 150
DLGTLRGYYN QSEAGSHTIQ IMYGCDVGSD GRFLRGYEQH AYDGKDYIAL
160 170 180 190 200
NEDLRSWTAA DMAAQITQRK WEAARWAEQL RAYLEGTCVE WLRRYLENGK
210 220 230 240 250
ETLQRTDPPK THMTHHPISD HEATLRCWAL GFYPAEITLT WQRDGEDQTQ
260 270 280 290 300
DTELVETRPA GDGTFQKWAA VVVPSGEEQR YTCHVQHEGL PKPLTLRWEL
310 320 330 340 350
SSQPTIPIVG IIAGLVLLGA VITGAVVAAV MWRRKSSDRK GGSYTQAASS
360
DSAQGSDVSL TACKV
Length:365
Mass (Da):40,905
Last modified:February 1, 1996 - v2
Checksum:i521166D95FB1DC28
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti33S → F in AAA59612 (PubMed:2478623).Curated1

Polymorphismi

The following alleles of A-30 are known: A*30:01 (A30.3), A*30:02, A*30:03, A*30:04 (A30W7), A*30:06, A*30:07 and A*30:08. The sequence shown is that of A*30:01.

Natural variant

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Natural variantiVAR_00436621H → Q in allele A*30:02, allele A*30:04 and allele A*30:08. 1
Natural variantiVAR_01028433S → Y in allele A*30:08. 1
Natural variantiVAR_01665355T → A in allele A*30:06. 1
Natural variantiVAR_00436780R → G in allele A*30:03. Combined sources1
Natural variantiVAR_01673886Q → E in allele A*30:07. 1
Natural variantiVAR_01673989 – 90RN → GK in allele A*30:07. 2
Natural variantiVAR_05627189R → G.Corresponds to variant rs1059459dbSNPEnsembl.1
Natural variantiVAR_00436894Q → H in allele A*30:02, allele A*30:03, allele A*30:04, allele A*30:06 and allele A*30:07. Corresponds to variant rs1059463dbSNPEnsembl.1
Natural variantiVAR_004369100 – 101VD → EN in allele A*30:02, allele A*30:03, allele A*30:04, allele A*30:06 and allele A*30:07. 2
Natural variantiVAR_056272101D → N.Corresponds to variant rs1136688dbSNPEnsembl.1
Natural variantiVAR_056273121I → M.Corresponds to variant rs1136695dbSNPEnsembl.1
Natural variantiVAR_056274129S → P.Corresponds to variant rs1136700dbSNPEnsembl.1
Natural variantiVAR_056275131G → W.Corresponds to variant rs1136702dbSNPEnsembl.1
Natural variantiVAR_056276133F → L.Corresponds to variant rs1059488dbSNPEnsembl.1
Natural variantiVAR_056277151N → K.Corresponds to variant rs1059509dbSNPEnsembl.1
Natural variantiVAR_056278166I → T.Corresponds to variant rs1059516dbSNPEnsembl.1
Natural variantiVAR_004370175 – 176RW → HV in allele A*30:04 and allele A*30:06. 2
Natural variantiVAR_004371176W → R in allele A*30:02, allele A*30:03 and allele A*30:07. 1
Natural variantiVAR_004372180L → W in allele A*30:04 and allele A*30:06. 1
Natural variantiVAR_056279205R → H.Corresponds to variant rs17185861dbSNPEnsembl.1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M30576 Genomic DNA. Translation: AAA59612.1.
U07234 mRNA. Translation: AAA70162.1.
X61702 mRNA. Translation: CAA43871.1.
M93657 Genomic DNA. Translation: AAA58650.1.
Z34921 Genomic DNA. Translation: CAA84401.1.
AH005195 Genomic DNA. Translation: AAB53658.1.
U24261 mRNA. Translation: AAB50434.1.
X83770 Genomic DNA. Translation: CAA58723.1.
X83771 Genomic DNA. Translation: CAA58724.1.
AH006045 Genomic DNA. Translation: AAC14191.1.
AH006148 Genomic DNA. Translation: AAC18600.1.
AJ249308
, AJ249309, AJ249310, AJ249311, AJ249312, AJ249313, AJ249314, AJ249315 Genomic DNA. Translation: CAB57306.1.
PIRiI38519.
I54307.
I56039.
UniGeneiHs.181244.
Hs.713441.

Genome annotation databases

EnsembliENST00000376809; ENSP00000366005; ENSG00000206503.
ENST00000396634; ENSP00000379873; ENSG00000206503.
UCSCiuc003nol.3. human.

Keywords - Coding sequence diversityi

Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M30576 Genomic DNA. Translation: AAA59612.1.
U07234 mRNA. Translation: AAA70162.1.
X61702 mRNA. Translation: CAA43871.1.
M93657 Genomic DNA. Translation: AAA58650.1.
Z34921 Genomic DNA. Translation: CAA84401.1.
AH005195 Genomic DNA. Translation: AAB53658.1.
U24261 mRNA. Translation: AAB50434.1.
X83770 Genomic DNA. Translation: CAA58723.1.
X83771 Genomic DNA. Translation: CAA58724.1.
AH006045 Genomic DNA. Translation: AAC14191.1.
AH006148 Genomic DNA. Translation: AAC18600.1.
AJ249308
, AJ249309, AJ249310, AJ249311, AJ249312, AJ249313, AJ249314, AJ249315 Genomic DNA. Translation: CAB57306.1.
PIRiI38519.
I54307.
I56039.
UniGeneiHs.181244.
Hs.713441.

3D structure databases

ProteinModelPortaliP16188.
SMRiP16188.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiP16188. 1 interactor.
STRINGi9606.ENSP00000366005.

PTM databases

iPTMnetiP16188.
SwissPalmiP16188.

Polymorphism and mutation databases

DMDMi1345596.

Proteomic databases

EPDiP16188.
MaxQBiP16188.
PaxDbiP16188.
PeptideAtlasiP16188.
PRIDEiP16188.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000376809; ENSP00000366005; ENSG00000206503.
ENST00000396634; ENSP00000379873; ENSG00000206503.
UCSCiuc003nol.3. human.

Organism-specific databases

GeneCardsiHLA-A.
HGNCiHGNC:4931. HLA-A.
MalaCardsiHLA-A.
MIMi142800. gene.
neXtProtiNX_P16188.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiENOG410II5V. Eukaryota.
ENOG4111K8F. LUCA.
HOVERGENiHBG016709.
TreeFamiTF336617.

Enzyme and pathway databases

ReactomeiR-HSA-1236974. ER-Phagosome pathway.
R-HSA-1236977. Endosomal/Vacuolar pathway.
R-HSA-198933. Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell.
R-HSA-877300. Interferon gamma signaling.
R-HSA-909733. Interferon alpha/beta signaling.
R-HSA-983170. Antigen Presentation: Folding, assembly and peptide loading of class I MHC.

Miscellaneous databases

ChiTaRSiHLA-A. human.
SOURCEiSearch...

Gene expression databases

BgeeiENSG00000206503.
CleanExiHS_HLA-A.
ExpressionAtlasiP16188. baseline and differential.
GenevisibleiP16188. HS.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
3.30.500.10. 1 hit.
InterProiIPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR003006. Ig/MHC_CS.
IPR003597. Ig_C1-set.
IPR011161. MHC_I-like_Ag-recog.
IPR011162. MHC_I/II-like_Ag-recog.
IPR001039. MHC_I_a_a1/a2.
IPR010579. MHC_I_a_C.
[Graphical view]
PfamiPF07654. C1-set. 1 hit.
PF00129. MHC_I. 1 hit.
PF06623. MHC_I_C. 1 hit.
[Graphical view]
PRINTSiPR01638. MHCCLASSI.
SMARTiSM00407. IGc1. 1 hit.
[Graphical view]
SUPFAMiSSF48726. SSF48726. 1 hit.
SSF54452. SSF54452. 1 hit.
PROSITEiPS50835. IG_LIKE. 1 hit.
PS00290. IG_MHC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry namei1A30_HUMAN
AccessioniPrimary (citable) accession number: P16188
Secondary accession number(s): O19598
, O62921, P30452, Q9UIP7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 1, 1990
Last sequence update: February 1, 1996
Last modified: November 2, 2016
This is version 141 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 6
    Human chromosome 6: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.