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Protein

HLA class I histocompatibility antigen, A-30 alpha chain

Gene

HLA-A

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Involved in the presentation of foreign antigens to the immune system.

GO - Molecular functioni

  • beta-2-microglobulin binding Source: UniProtKB
  • peptide antigen binding Source: UniProtKB
  • TAP binding Source: UniProtKB

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Host-virus interaction, Immunity

Enzyme and pathway databases

ReactomeiR-HSA-1236974. ER-Phagosome pathway.
R-HSA-1236977. Endosomal/Vacuolar pathway.
R-HSA-198933. Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell.
R-HSA-877300. Interferon gamma signaling.
R-HSA-909733. Interferon alpha/beta signaling.
R-HSA-983170. Antigen Presentation: Folding, assembly and peptide loading of class I MHC.

Names & Taxonomyi

Protein namesi
Recommended name:
HLA class I histocompatibility antigen, A-30 alpha chain
Alternative name(s):
MHC class I antigen A*30
Gene namesi
Name:HLA-A
Synonyms:HLAA
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 6

Organism-specific databases

HGNCiHGNC:4931. HLA-A.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini25 – 308284ExtracellularSequence analysisAdd
BLAST
Transmembranei309 – 33224HelicalSequence analysisAdd
BLAST
Topological domaini333 – 36533CytoplasmicSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane, MHC I

Pathology & Biotechi

Organism-specific databases

MalaCardsiHLA-A.

Polymorphism and mutation databases

DMDMi1345596.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2424Add
BLAST
Chaini25 – 365341HLA class I histocompatibility antigen, A-30 alpha chainPRO_0000018822Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi110 – 1101N-linked (GlcNAc...)By similarity
Disulfide bondi125 ↔ 188PROSITE-ProRule annotation
Disulfide bondi227 ↔ 283PROSITE-ProRule annotation
Modified residuei343 – 3431PhosphoserineBy similarity
Modified residuei344 – 3441PhosphotyrosineBy similarity
Modified residuei349 – 3491PhosphoserineBy similarity
Modified residuei350 – 3501PhosphoserineBy similarity
Modified residuei352 – 3521PhosphoserineCombined sources
Modified residuei356 – 3561PhosphoserineCombined sources
Modified residuei359 – 3591PhosphoserineCombined sources

Post-translational modificationi

Polyubiquitinated in a post ER compartment by interaction with human herpesvirus 8 MIR1 protein. This targets the protein for rapid degradation via the ubiquitin system (By similarity).By similarity

Keywords - PTMi

Disulfide bond, Glycoprotein, Phosphoprotein, Ubl conjugation

Proteomic databases

EPDiP16188.
MaxQBiP16188.
PaxDbiP16188.
PeptideAtlasiP16188.
PRIDEiP16188.

PTM databases

iPTMnetiP16188.
SwissPalmiP16188.

Expressioni

Gene expression databases

BgeeiENSG00000206503.
CleanExiHS_HLA-A.
ExpressionAtlasiP16188. baseline and differential.
GenevisibleiP16188. HS.

Interactioni

Subunit structurei

Heterodimer of an alpha chain and a beta chain (beta-2-microglobulin). Interacts with human herpesvirus 8 MIR1 protein (By similarity).By similarity

GO - Molecular functioni

  • beta-2-microglobulin binding Source: UniProtKB
  • TAP binding Source: UniProtKB

Protein-protein interaction databases

IntActiP16188. 1 interaction.
STRINGi9606.ENSP00000366005.

Structurei

3D structure databases

ProteinModelPortaliP16188.
SMRiP16188. Positions 25-298.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini209 – 29587Ig-like C1-typeAdd
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni25 – 11490Alpha-1Add
BLAST
Regioni115 – 20692Alpha-2Add
BLAST
Regioni207 – 29892Alpha-3Add
BLAST
Regioni299 – 30810Connecting peptide

Sequence similaritiesi

Belongs to the MHC class I family.Curated

Keywords - Domaini

Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG410II5V. Eukaryota.
ENOG4111K8F. LUCA.
HOVERGENiHBG016709.
TreeFamiTF336617.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
3.30.500.10. 1 hit.
InterProiIPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR003006. Ig/MHC_CS.
IPR003597. Ig_C1-set.
IPR011161. MHC_I-like_Ag-recog.
IPR011162. MHC_I/II-like_Ag-recog.
IPR001039. MHC_I_a_a1/a2.
IPR010579. MHC_I_a_C.
[Graphical view]
PfamiPF07654. C1-set. 1 hit.
PF00129. MHC_I. 1 hit.
PF06623. MHC_I_C. 1 hit.
[Graphical view]
PRINTSiPR01638. MHCCLASSI.
SMARTiSM00407. IGc1. 1 hit.
[Graphical view]
SUPFAMiSSF48726. SSF48726. 1 hit.
SSF54452. SSF54452. 1 hit.
PROSITEiPS50835. IG_LIKE. 1 hit.
PS00290. IG_MHC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P16188-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAVMAPRTLL LLLSGALALT HTWAGSHSMR YFSTSVSRPG SGEPRFIAVG
60 70 80 90 100
YVDDTQFVRF DSDAASQRME PRAPWIEQER PEYWDQETRN VKAQSQTDRV
110 120 130 140 150
DLGTLRGYYN QSEAGSHTIQ IMYGCDVGSD GRFLRGYEQH AYDGKDYIAL
160 170 180 190 200
NEDLRSWTAA DMAAQITQRK WEAARWAEQL RAYLEGTCVE WLRRYLENGK
210 220 230 240 250
ETLQRTDPPK THMTHHPISD HEATLRCWAL GFYPAEITLT WQRDGEDQTQ
260 270 280 290 300
DTELVETRPA GDGTFQKWAA VVVPSGEEQR YTCHVQHEGL PKPLTLRWEL
310 320 330 340 350
SSQPTIPIVG IIAGLVLLGA VITGAVVAAV MWRRKSSDRK GGSYTQAASS
360
DSAQGSDVSL TACKV
Length:365
Mass (Da):40,905
Last modified:February 1, 1996 - v2
Checksum:i521166D95FB1DC28
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti33 – 331S → F in AAA59612 (PubMed:2478623).Curated

Polymorphismi

The following alleles of A-30 are known: A*30:01 (A30.3), A*30:02, A*30:03, A*30:04 (A30W7), A*30:06, A*30:07 and A*30:08. The sequence shown is that of A*30:01.

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti21 – 211H → Q in allele A*30:02, allele A*30:04 and allele A*30:08.
VAR_004366
Natural varianti33 – 331S → Y in allele A*30:08.
VAR_010284
Natural varianti55 – 551T → A in allele A*30:06.
VAR_016653
Natural varianti80 – 801R → G in allele A*30:03. Combined sources
VAR_004367
Natural varianti86 – 861Q → E in allele A*30:07.
VAR_016738
Natural varianti89 – 902RN → GK in allele A*30:07.
VAR_016739
Natural varianti89 – 891R → G.
Corresponds to variant rs1059459 [ dbSNP | Ensembl ].
VAR_056271
Natural varianti94 – 941Q → H in allele A*30:02, allele A*30:03, allele A*30:04, allele A*30:06 and allele A*30:07.
Corresponds to variant rs1059463 [ dbSNP | Ensembl ].
VAR_004368
Natural varianti100 – 1012VD → EN in allele A*30:02, allele A*30:03, allele A*30:04, allele A*30:06 and allele A*30:07.
VAR_004369
Natural varianti101 – 1011D → N.
Corresponds to variant rs1136688 [ dbSNP | Ensembl ].
VAR_056272
Natural varianti121 – 1211I → M.
Corresponds to variant rs1136695 [ dbSNP | Ensembl ].
VAR_056273
Natural varianti129 – 1291S → P.
Corresponds to variant rs1136700 [ dbSNP | Ensembl ].
VAR_056274
Natural varianti131 – 1311G → W.
Corresponds to variant rs1136702 [ dbSNP | Ensembl ].
VAR_056275
Natural varianti133 – 1331F → L.
Corresponds to variant rs1059488 [ dbSNP | Ensembl ].
VAR_056276
Natural varianti151 – 1511N → K.
Corresponds to variant rs1059509 [ dbSNP | Ensembl ].
VAR_056277
Natural varianti166 – 1661I → T.
Corresponds to variant rs1059516 [ dbSNP | Ensembl ].
VAR_056278
Natural varianti175 – 1762RW → HV in allele A*30:04 and allele A*30:06.
VAR_004370
Natural varianti176 – 1761W → R in allele A*30:02, allele A*30:03 and allele A*30:07.
VAR_004371
Natural varianti180 – 1801L → W in allele A*30:04 and allele A*30:06.
VAR_004372
Natural varianti205 – 2051R → H.
Corresponds to variant rs17185861 [ dbSNP | Ensembl ].
VAR_056279

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M30576 Genomic DNA. Translation: AAA59612.1.
U07234 mRNA. Translation: AAA70162.1.
X61702 mRNA. Translation: CAA43871.1.
M93657 Genomic DNA. Translation: AAA58650.1.
Z34921 Genomic DNA. Translation: CAA84401.1.
AH005195 Genomic DNA. Translation: AAB53658.1.
U24261 mRNA. Translation: AAB50434.1.
X83770 Genomic DNA. Translation: CAA58723.1.
X83771 Genomic DNA. Translation: CAA58724.1.
AH006045 Genomic DNA. Translation: AAC14191.1.
AH006148 Genomic DNA. Translation: AAC18600.1.
AJ249308
, AJ249309, AJ249310, AJ249311, AJ249312, AJ249313, AJ249314, AJ249315 Genomic DNA. Translation: CAB57306.1.
PIRiI38519.
I54307.
I56039.
UniGeneiHs.181244.
Hs.713441.

Genome annotation databases

EnsembliENST00000376809; ENSP00000366005; ENSG00000206503.
ENST00000396634; ENSP00000379873; ENSG00000206503.
UCSCiuc003nol.3. human.

Keywords - Coding sequence diversityi

Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M30576 Genomic DNA. Translation: AAA59612.1.
U07234 mRNA. Translation: AAA70162.1.
X61702 mRNA. Translation: CAA43871.1.
M93657 Genomic DNA. Translation: AAA58650.1.
Z34921 Genomic DNA. Translation: CAA84401.1.
AH005195 Genomic DNA. Translation: AAB53658.1.
U24261 mRNA. Translation: AAB50434.1.
X83770 Genomic DNA. Translation: CAA58723.1.
X83771 Genomic DNA. Translation: CAA58724.1.
AH006045 Genomic DNA. Translation: AAC14191.1.
AH006148 Genomic DNA. Translation: AAC18600.1.
AJ249308
, AJ249309, AJ249310, AJ249311, AJ249312, AJ249313, AJ249314, AJ249315 Genomic DNA. Translation: CAB57306.1.
PIRiI38519.
I54307.
I56039.
UniGeneiHs.181244.
Hs.713441.

3D structure databases

ProteinModelPortaliP16188.
SMRiP16188. Positions 25-298.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiP16188. 1 interaction.
STRINGi9606.ENSP00000366005.

PTM databases

iPTMnetiP16188.
SwissPalmiP16188.

Polymorphism and mutation databases

DMDMi1345596.

Proteomic databases

EPDiP16188.
MaxQBiP16188.
PaxDbiP16188.
PeptideAtlasiP16188.
PRIDEiP16188.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000376809; ENSP00000366005; ENSG00000206503.
ENST00000396634; ENSP00000379873; ENSG00000206503.
UCSCiuc003nol.3. human.

Organism-specific databases

GeneCardsiHLA-A.
HGNCiHGNC:4931. HLA-A.
MalaCardsiHLA-A.
MIMi142800. gene.
neXtProtiNX_P16188.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiENOG410II5V. Eukaryota.
ENOG4111K8F. LUCA.
HOVERGENiHBG016709.
TreeFamiTF336617.

Enzyme and pathway databases

ReactomeiR-HSA-1236974. ER-Phagosome pathway.
R-HSA-1236977. Endosomal/Vacuolar pathway.
R-HSA-198933. Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell.
R-HSA-877300. Interferon gamma signaling.
R-HSA-909733. Interferon alpha/beta signaling.
R-HSA-983170. Antigen Presentation: Folding, assembly and peptide loading of class I MHC.

Miscellaneous databases

ChiTaRSiHLA-A. human.
SOURCEiSearch...

Gene expression databases

BgeeiENSG00000206503.
CleanExiHS_HLA-A.
ExpressionAtlasiP16188. baseline and differential.
GenevisibleiP16188. HS.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
3.30.500.10. 1 hit.
InterProiIPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR003006. Ig/MHC_CS.
IPR003597. Ig_C1-set.
IPR011161. MHC_I-like_Ag-recog.
IPR011162. MHC_I/II-like_Ag-recog.
IPR001039. MHC_I_a_a1/a2.
IPR010579. MHC_I_a_C.
[Graphical view]
PfamiPF07654. C1-set. 1 hit.
PF00129. MHC_I. 1 hit.
PF06623. MHC_I_C. 1 hit.
[Graphical view]
PRINTSiPR01638. MHCCLASSI.
SMARTiSM00407. IGc1. 1 hit.
[Graphical view]
SUPFAMiSSF48726. SSF48726. 1 hit.
SSF54452. SSF54452. 1 hit.
PROSITEiPS50835. IG_LIKE. 1 hit.
PS00290. IG_MHC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry namei1A30_HUMAN
AccessioniPrimary (citable) accession number: P16188
Secondary accession number(s): O19598
, O62921, P30452, Q9UIP7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 1, 1990
Last sequence update: February 1, 1996
Last modified: September 7, 2016
This is version 139 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 6
    Human chromosome 6: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.