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Protein

50S ribosomal protein L10

Gene

rpl10

Organism
Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors.Curated

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L10UniRule annotation
Alternative name(s):
Acidic ribosomal protein P0 homologUniRule annotation
HMal10
L10E
Gene namesi
Name:rpl10UniRule annotation
Synonyms:rpl10e, rplP0UniRule annotation
Ordered Locus Names:rrnAC1417
OrganismiHaloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui)
Taxonomic identifieri272569 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaHalobacteriaHalobacterialesHalobacteriaceaeHaloarcula
Proteomesi
  • UP000001169 Componenti: Chromosome I

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001547891 – 34850S ribosomal protein L10Add BLAST348

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Forms a heptameric L10(L12)2(L12)2(L12)2 complex, where L10 forms an elongated spine to which the L12 dimers bind in a sequential fashion (Probable).2 Publications

Protein-protein interaction databases

STRINGi272569.rrnAC1417.

Structurei

Secondary structure

1348
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi14 – 28Combined sources15
Beta strandi29 – 32Combined sources4
Helixi43 – 49Combined sources7
Helixi64 – 71Combined sources8
Beta strandi74 – 78Combined sources5
Helixi79 – 83Combined sources5
Beta strandi87 – 91Combined sources5
Helixi100 – 107Combined sources8
Beta strandi111 – 113Combined sources3
Beta strandi123 – 125Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1JJ2X-ray2.40G1-348[»]
1K73X-ray3.01I1-348[»]
1K8AX-ray3.00I1-348[»]
1K9MX-ray3.00I1-348[»]
1KC8X-ray3.01I1-348[»]
1KD1X-ray3.00I1-348[»]
1KQSX-ray3.10G1-348[»]
1M1KX-ray3.20I1-348[»]
1M90X-ray2.80I1-348[»]
1N8RX-ray3.00I1-348[»]
1NJIX-ray3.00I1-348[»]
1Q7YX-ray3.20I1-348[»]
1Q81X-ray2.95I1-348[»]
1Q82X-ray2.98I1-348[»]
1Q86X-ray3.00I1-348[»]
1QVFX-ray3.10G1-348[»]
1QVGX-ray2.90G1-348[»]
1S72X-ray2.40G1-348[»]
1VQ4X-ray2.70G1-348[»]
1VQ5X-ray2.60G1-348[»]
1VQ6X-ray2.70G1-348[»]
1VQ7X-ray2.50G1-348[»]
1VQ8X-ray2.20G1-348[»]
1VQ9X-ray2.40G1-348[»]
1VQKX-ray2.30G1-348[»]
1VQLX-ray2.30G1-348[»]
1VQMX-ray2.30G1-348[»]
1VQNX-ray2.40G1-348[»]
1VQOX-ray2.20G1-348[»]
1VQPX-ray2.25G1-348[»]
1W2BX-ray3.50G1-348[»]
1YHQX-ray2.40G1-348[»]
1YI2X-ray2.65G1-348[»]
1YIJX-ray2.60G1-348[»]
1YITX-ray2.80G1-348[»]
1YJ9X-ray2.90G1-348[»]
1YJNX-ray3.00G1-348[»]
1YJWX-ray2.90G1-348[»]
1ZB4model-A1-130[»]
2OTJX-ray2.90G1-348[»]
2OTLX-ray2.70G1-348[»]
2QA4X-ray3.00G1-348[»]
2QEXX-ray2.90G1-348[»]
3CC2X-ray2.40G1-348[»]
3CC4X-ray2.70G1-348[»]
3CC7X-ray2.70G1-348[»]
3CCEX-ray2.75G1-348[»]
3CCJX-ray2.70G1-348[»]
3CCLX-ray2.90G1-348[»]
3CCMX-ray2.55G1-348[»]
3CCQX-ray2.90G1-348[»]
3CCRX-ray3.00G1-348[»]
3CCSX-ray2.95G1-348[»]
3CCUX-ray2.80G1-348[»]
3CCVX-ray2.90G1-348[»]
3CD6X-ray2.75G1-348[»]
3CMAX-ray2.80G1-348[»]
3CMEX-ray2.95G1-348[»]
3CPWX-ray2.70G1-348[»]
3CXCX-ray3.00G1-348[»]
3G4SX-ray3.20G1-348[»]
3G6EX-ray2.70G1-348[»]
3G71X-ray2.85G1-348[»]
3I55X-ray3.11G1-348[»]
3I56X-ray2.90G1-348[»]
3OW2X-ray2.70G12-73[»]
4V9FX-ray2.40G6-211[»]
ProteinModelPortaliP15825.
SMRiP15825.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP15825.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L10P family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG04288. Archaea.
COG0244. LUCA.
HOGENOMiHOG000229909.
KOiK02864.
OMAiQKELYFA.

Family and domain databases

Gene3Di1.10.10.380. 2 hits.
HAMAPiMF_00280. Ribosomal_L10_arch. 1 hit.
InterProiIPR022909. 50S_L10_arch.
IPR013522. Ribosomal_L10_N_arc.
IPR001790. Ribosomal_L10P.
[Graphical view]
PfamiPF00466. Ribosomal_L10. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P15825-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSAESERKTE TIPEWKQEEV DAIVEMIESY ESVGVVNIAG IPSRQLQDMR
60 70 80 90 100
RDLHGTAELR VSRNTLLERA LDDVDDGLED LNGYITGQVG LIGTDDNPFS
110 120 130 140 150
LFQELEASKT PAPIGAGEVA PNDIVIPEGD TGVDPGPFVG ELQSVGADAR
160 170 180 190 200
IQEGSIQVLS DSTVLDTGEE VSQELSNVLN ELGIEPKEVG LDLRAVFADG
210 220 230 240 250
VLFEPEELEL DIDEYRSDIQ AAAGRAFNLS VNADYPTATT APTMLQSARG
260 270 280 290 300
NAKSLALQAA IEDPEVVPDL VSKADAQVRA LASQIDDEEA LPEELQGVEA
310 320 330 340
DVATEEPTDD QDDDTASEDD ADADDAAEEA DDDDDDDEDA GDALGAMF
Length:348
Mass (Da):37,150
Last modified:January 4, 2005 - v2
Checksum:i4063B1C9D2FCB164
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti248A → D in CAA35795 (PubMed:2320419).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X51430 Genomic DNA. Translation: CAA35795.1.
AY596297 Genomic DNA. Translation: AAV46344.1.
PIRiS08422. R5HS10.
RefSeqiWP_011223609.1. NC_006396.1.

Genome annotation databases

EnsemblBacteriaiAAV46344; AAV46344; rrnAC1417.
GeneIDi3128417.
KEGGihma:rrnAC1417.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X51430 Genomic DNA. Translation: CAA35795.1.
AY596297 Genomic DNA. Translation: AAV46344.1.
PIRiS08422. R5HS10.
RefSeqiWP_011223609.1. NC_006396.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1JJ2X-ray2.40G1-348[»]
1K73X-ray3.01I1-348[»]
1K8AX-ray3.00I1-348[»]
1K9MX-ray3.00I1-348[»]
1KC8X-ray3.01I1-348[»]
1KD1X-ray3.00I1-348[»]
1KQSX-ray3.10G1-348[»]
1M1KX-ray3.20I1-348[»]
1M90X-ray2.80I1-348[»]
1N8RX-ray3.00I1-348[»]
1NJIX-ray3.00I1-348[»]
1Q7YX-ray3.20I1-348[»]
1Q81X-ray2.95I1-348[»]
1Q82X-ray2.98I1-348[»]
1Q86X-ray3.00I1-348[»]
1QVFX-ray3.10G1-348[»]
1QVGX-ray2.90G1-348[»]
1S72X-ray2.40G1-348[»]
1VQ4X-ray2.70G1-348[»]
1VQ5X-ray2.60G1-348[»]
1VQ6X-ray2.70G1-348[»]
1VQ7X-ray2.50G1-348[»]
1VQ8X-ray2.20G1-348[»]
1VQ9X-ray2.40G1-348[»]
1VQKX-ray2.30G1-348[»]
1VQLX-ray2.30G1-348[»]
1VQMX-ray2.30G1-348[»]
1VQNX-ray2.40G1-348[»]
1VQOX-ray2.20G1-348[»]
1VQPX-ray2.25G1-348[»]
1W2BX-ray3.50G1-348[»]
1YHQX-ray2.40G1-348[»]
1YI2X-ray2.65G1-348[»]
1YIJX-ray2.60G1-348[»]
1YITX-ray2.80G1-348[»]
1YJ9X-ray2.90G1-348[»]
1YJNX-ray3.00G1-348[»]
1YJWX-ray2.90G1-348[»]
1ZB4model-A1-130[»]
2OTJX-ray2.90G1-348[»]
2OTLX-ray2.70G1-348[»]
2QA4X-ray3.00G1-348[»]
2QEXX-ray2.90G1-348[»]
3CC2X-ray2.40G1-348[»]
3CC4X-ray2.70G1-348[»]
3CC7X-ray2.70G1-348[»]
3CCEX-ray2.75G1-348[»]
3CCJX-ray2.70G1-348[»]
3CCLX-ray2.90G1-348[»]
3CCMX-ray2.55G1-348[»]
3CCQX-ray2.90G1-348[»]
3CCRX-ray3.00G1-348[»]
3CCSX-ray2.95G1-348[»]
3CCUX-ray2.80G1-348[»]
3CCVX-ray2.90G1-348[»]
3CD6X-ray2.75G1-348[»]
3CMAX-ray2.80G1-348[»]
3CMEX-ray2.95G1-348[»]
3CPWX-ray2.70G1-348[»]
3CXCX-ray3.00G1-348[»]
3G4SX-ray3.20G1-348[»]
3G6EX-ray2.70G1-348[»]
3G71X-ray2.85G1-348[»]
3I55X-ray3.11G1-348[»]
3I56X-ray2.90G1-348[»]
3OW2X-ray2.70G12-73[»]
4V9FX-ray2.40G6-211[»]
ProteinModelPortaliP15825.
SMRiP15825.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272569.rrnAC1417.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAV46344; AAV46344; rrnAC1417.
GeneIDi3128417.
KEGGihma:rrnAC1417.

Phylogenomic databases

eggNOGiarCOG04288. Archaea.
COG0244. LUCA.
HOGENOMiHOG000229909.
KOiK02864.
OMAiQKELYFA.

Miscellaneous databases

EvolutionaryTraceiP15825.

Family and domain databases

Gene3Di1.10.10.380. 2 hits.
HAMAPiMF_00280. Ribosomal_L10_arch. 1 hit.
InterProiIPR022909. 50S_L10_arch.
IPR013522. Ribosomal_L10_N_arc.
IPR001790. Ribosomal_L10P.
[Graphical view]
PfamiPF00466. Ribosomal_L10. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL10_HALMA
AccessioniPrimary (citable) accession number: P15825
Secondary accession number(s): Q5V2A8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 1, 1990
Last sequence update: January 4, 2005
Last modified: November 2, 2016
This is version 122 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Miscellaneous

Has been called L10e and L10E in this organism; in this case "e/E" is for E.coli-like, not eukaryotic-type protein.

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.