Reviewed, UniProtKB/Swiss-Prot P15597 (VIRF_AGRT9)

Names and origin

Protein names

Recommended name:
    Protein virF

Gene names

Name:

virF

Encoded on

Plasmid pTi15955

Organism

Agrobacterium tumefaciens (strain 15955)

Taxonomic identifier

190386 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Rhizobium/Agrobacterium group › Agrobacterium

Protein attributes

Sequence length	202 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at protein level.

General annotation (Comments)

Function

VirF protein is required for the formation of tumors of a wild-type size on certain plant species only.

Ontologies

Keywords
Biological process	Virulence
Disease	Crown gall tumor
Technical term	Plasmid
Gene Ontology (GO)
Biological process	pathogenesis Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	protein binding Inferred from physical interaction. Source: IntAct
Complete GO annotation...

Binary interactions

With	Entry	#Exp.	IntAct	Notes
ASK10	Q9C5T5	4	EBI-605118,EBI-607786	From a different organism.
At1g43700	Q9MA75	2	EBI-605118,EBI-606057	From a different organism.
SKP1A	Q39255	5	EBI-605118,EBI-532357	From a different organism.
SKP1B	Q9FHW7	4	EBI-605118,EBI-604076	From a different organism.

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 202	202	Protein virF		PRO_0000065870

Sequences

	Sequence		Length	Mass (Da)
	P15597-1 [UniParc]. Last modified April 1, 1990. Version 1. Checksum: 3B0E33E157C1ADD1	FASTA	202	22,437
	10 20 30 40 50 60 MRNSSLRDAS GSNDAQVPHK TELLNLPDHV LTEVAKRLAT NNPVESAENI ANFSKSHRFT 70 80 90 100 110 120 RDAVRTEPLE KFSSRLKILS RNAKLLSHAV RHAATLPDGE QLSEAQLSQM RSEVATRPVL 130 140 150 160 170 180 GVAYTHQDGQ PEERLSGNHL DHKINNIPNL VFNVAEPIMF NEISALEVMA EVRPIARSIK 190 200 TAHDDARAEL MSADRPRSTR GL

References

[1]

"Octopine and nopaline strains of Agrobacterium tumefaciens differ in virulence; molecular characterization of the virF locus." Melchers L.S., Maroney M.J., den Dulk-Ras A., Thompson D.V., van Vuuren H.A.J., Schilperoort R.A., Hooykaas P.J.J. Plant Mol. Biol. 14:249-259(1990) [PubMed: 2101693] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].

Cross-references

Sequence databases
EMBLGenBankDDBJ	X13981 Genomic DNA. Translation: CAA32163.1.
PIR	S07979. S15915.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
IntAct	P15597. 8 interactions.
Family and domain databases
InterPro	IPR001810. F-box. [Graphical view]
Pfam	PF00646. F-box. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

VIRF_AGRT9

Accession

Primary (citable) accession number: P15597

Entry history

Integrated into UniProtKB/Swiss-Prot:	April 1, 1990
Last sequence update:	April 1, 1990
Last modified:	December 16, 2008
This is version 47 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)