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Reviewed, UniProtKB/Swiss-Prot P15597 (VIRF_AGRT9)

Last modified December 16, 2008. Version 47. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Binary interactions · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information

Names and origin

Protein namesRecommended name:
    Protein virF
Gene names
Name: virF
Encoded onPlasmid pTi15955
OrganismAgrobacterium tumefaciens (strain 15955)
Taxonomic identifier190386 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupAgrobacterium

Protein attributes

Sequence length202 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceEvidence at protein level.

General annotation (Comments)

Function

VirF protein is required for the formation of tumors of a wild-type size on certain plant species only.

Ontologies

Keywords
   Biological processVirulence
   DiseaseCrown gall tumor
   Technical termPlasmid
Gene Ontology (GO)
   Biological processpathogenesis

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular functionprotein binding

Inferred from physical interaction. Source: IntAct

Complete GO annotation...

Binary interactions

With

Entry

#Exp.

IntAct

Notes

ASK10Q9C5T54EBI-605118,EBI-607786From a different organism.
At1g43700Q9MA752EBI-605118,EBI-606057From a different organism.
SKP1AQ392555EBI-605118,EBI-532357From a different organism.
SKP1BQ9FHW74EBI-605118,EBI-604076From a different organism.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 202202Protein virF
PRO_0000065870

Sequences

Sequence LengthMass (Da)Tools
P15597-1 [UniParc].

Last modified April 1, 1990. Version 1.
Checksum: 3B0E33E157C1ADD1

FASTA20222,437
        10         20         30         40         50         60 
MRNSSLRDAS GSNDAQVPHK TELLNLPDHV LTEVAKRLAT NNPVESAENI ANFSKSHRFT 

        70         80         90        100        110        120 
RDAVRTEPLE KFSSRLKILS RNAKLLSHAV RHAATLPDGE QLSEAQLSQM RSEVATRPVL 

       130        140        150        160        170        180 
GVAYTHQDGQ PEERLSGNHL DHKINNIPNL VFNVAEPIMF NEISALEVMA EVRPIARSIK 

       190        200 
TAHDDARAEL MSADRPRSTR GL 

« Hide

References

[1]"Octopine and nopaline strains of Agrobacterium tumefaciens differ in virulence; molecular characterization of the virF locus."
Melchers L.S., Maroney M.J., den Dulk-Ras A., Thompson D.V., van Vuuren H.A.J., Schilperoort R.A., Hooykaas P.J.J.
Plant Mol. Biol. 14:249-259(1990) [PubMed: 2101693] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].

Cross-references

Sequence databases

X13981 Genomic DNA. Translation: CAA32163.1.
PIRS07979. S15915.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

IntActP15597. 8 interactions.

Family and domain databases

InterProIPR001810. F-box.
[Graphical view]
PfamPF00646. F-box. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameVIRF_AGRT9
AccessionPrimary (citable) accession number: P15597
Entry history
Integrated into UniProtKB/Swiss-Prot: April 1, 1990
Last sequence update: April 1, 1990
Last modified: December 16, 2008
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Binary interactions · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information