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P15499

- PRPH2_MOUSE

UniProt

P15499 - PRPH2_MOUSE

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Protein
Peripherin-2
Gene
Prph2, Rds
Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 4 out of 5 - Experimental evidence at protein leveli

Functioni

May function as an adhesion molecule involved in stabilization and compaction of outer segment disks or in the maintenance of the curvature of the rim. It is essential for disk morphogenesis.

GO - Biological processi

  1. cell adhesion Source: UniProtKB-KW
  2. retina development in camera-type eye Source: MGI
  3. visual perception Source: InterPro
Complete GO annotation...

Keywords - Biological processi

Cell adhesion

Names & Taxonomyi

Protein namesi
Recommended name:
Peripherin-2
Alternative name(s):
Retinal degeneration slow protein
Gene namesi
Name:Prph2
Synonyms:Rds
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 17

Organism-specific databases

MGIiMGI:102791. Prph2.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 2424Cytoplasmic Reviewed prediction
Add
BLAST
Transmembranei25 – 4319Helical; Reviewed prediction
Add
BLAST
Topological domaini44 – 6118Lumenal Reviewed prediction
Add
BLAST
Transmembranei62 – 8019Helical; Reviewed prediction
Add
BLAST
Topological domaini81 – 9919Cytoplasmic Reviewed prediction
Add
BLAST
Transmembranei100 – 12324Helical; Reviewed prediction
Add
BLAST
Topological domaini124 – 264141Lumenal Reviewed prediction
Add
BLAST
Transmembranei265 – 29026Helical; Reviewed prediction
Add
BLAST
Topological domaini291 – 34656Cytoplasmic Reviewed prediction
Add
BLAST

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Membrane

Pathology & Biotechi

Involvement in diseasei

Responsible for retinal degeneration slow (Rds).

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 346346Peripherin-2
PRO_0000168106Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi53 – 531N-linked (GlcNAc...) Reviewed prediction
Glycosylationi229 – 2291N-linked (GlcNAc...) Reviewed prediction

Keywords - PTMi

Disulfide bond, Glycoprotein

Proteomic databases

PRIDEiP15499.

PTM databases

PhosphoSiteiP15499.

Expressioni

Tissue specificityi

Retina (photoreceptor). In rim region of ROS (rod outer segment) disks.

Gene expression databases

BgeeiP15499.
CleanExiMM_PRPH2.
GenevestigatoriP15499.

Interactioni

Subunit structurei

Homodimer; disulfide-linked. Probably forms a complex with a ROM1 homodimer. Other proteins could associate with this complex in rods. Interacts with MREG.1 Publication

Protein-protein interaction databases

MINTiMINT-8401204.
STRINGi10090.ENSMUSP00000024773.

Structurei

3D structure databases

ProteinModelPortaliP15499.

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni341 – 3466Interaction with MREG

Sequence similaritiesi

Belongs to the PRPH2/ROM1 family.

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiNOG237707.
HOGENOMiHOG000026780.
HOVERGENiHBG004964.
InParanoidiP15499.
KOiK17343.
OMAiKVKFDQK.
OrthoDBiEOG7T1RBG.
PhylomeDBiP15499.
TreeFamiTF331684.

Family and domain databases

InterProiIPR000830. Peripherin/rom-1.
IPR018498. Peripherin/rom-1_CS.
IPR018499. Tetraspanin/Peripherin.
IPR008952. Tetraspanin_EC2.
[Graphical view]
PfamiPF00335. Tetraspannin. 1 hit.
[Graphical view]
PRINTSiPR00218. PERIPHERNRDS.
SUPFAMiSSF48652. SSF48652. 2 hits.
PROSITEiPS00930. RDS_ROM1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P15499-1 [UniParc]FASTAAdd to Basket

« Hide

MALLKVKFDQ KKRVKLAQGL WLMNWLSVLA GIVLFSLGLF LKIELRKRSE    50
VMNNSESHFV PNSLIGVGVL SCVFNSLAGK ICYDALDPAK YAKWKPWLKP 100
YLAVCIFFNV ILFLVALCCF LLRGSLESTL AYGLKNGMKY YRDTDTPGRC 150
FMKKTIDMLQ IEFKCCGNNG FRDWFEIQWI SNRYLDFSSK EVKDRIKSNV 200
DGRYLVDGVP FSCCNPSSPR PCIQYQLTNN SAHYSYDHQT EELNLWLRGC 250
RAALLNYYSS LMNSMGVVTL LVWLFEVSIT AGLRYLHTAL ESVSNPEDPE 300
CESEGWLLEK SVPETWKAFL ESFKKLGKSN QVEAEGADAG PAPEAG 346
Length:346
Mass (Da):39,260
Last modified:April 1, 1990 - v1
Checksum:iF9B80C14F2867BDE
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X14770 mRNA. Translation: CAA32878.1.
BC028958 mRNA. Translation: AAH28958.1.
BC085266 mRNA. Translation: AAH85266.1.
L42167 Genomic DNA. Translation: AAC37674.1.
CCDSiCCDS28844.1.
PIRiS03347.
RefSeqiNP_032964.1. NM_008938.1.
UniGeneiMm.291370.

Genome annotation databases

EnsembliENSMUST00000024773; ENSMUSP00000024773; ENSMUSG00000023978.
GeneIDi19133.
KEGGimmu:19133.
UCSCiuc008cun.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X14770 mRNA. Translation: CAA32878.1 .
BC028958 mRNA. Translation: AAH28958.1 .
BC085266 mRNA. Translation: AAH85266.1 .
L42167 Genomic DNA. Translation: AAC37674.1 .
CCDSi CCDS28844.1.
PIRi S03347.
RefSeqi NP_032964.1. NM_008938.1.
UniGenei Mm.291370.

3D structure databases

ProteinModelPortali P15499.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

MINTi MINT-8401204.
STRINGi 10090.ENSMUSP00000024773.

PTM databases

PhosphoSitei P15499.

Proteomic databases

PRIDEi P15499.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000024773 ; ENSMUSP00000024773 ; ENSMUSG00000023978 .
GeneIDi 19133.
KEGGi mmu:19133.
UCSCi uc008cun.1. mouse.

Organism-specific databases

CTDi 5961.
MGIi MGI:102791. Prph2.

Phylogenomic databases

eggNOGi NOG237707.
HOGENOMi HOG000026780.
HOVERGENi HBG004964.
InParanoidi P15499.
KOi K17343.
OMAi KVKFDQK.
OrthoDBi EOG7T1RBG.
PhylomeDBi P15499.
TreeFami TF331684.

Miscellaneous databases

ChiTaRSi PRPH2. mouse.
NextBioi 295758.
PROi P15499.
SOURCEi Search...

Gene expression databases

Bgeei P15499.
CleanExi MM_PRPH2.
Genevestigatori P15499.

Family and domain databases

InterProi IPR000830. Peripherin/rom-1.
IPR018498. Peripherin/rom-1_CS.
IPR018499. Tetraspanin/Peripherin.
IPR008952. Tetraspanin_EC2.
[Graphical view ]
Pfami PF00335. Tetraspannin. 1 hit.
[Graphical view ]
PRINTSi PR00218. PERIPHERNRDS.
SUPFAMi SSF48652. SSF48652. 2 hits.
PROSITEi PS00930. RDS_ROM1. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Identification of a photoreceptor-specific mRNA encoded by the gene responsible for retinal degeneration slow (rds)."
    Travis G.H., Brennan M.B., Danielson P.E., Kozak C.A., Sutcliffe J.G.
    Nature 338:70-73(1989) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: C57BL/6.
    Tissue: Retina.
  2. "Photoreceptor peripherin is the normal product of the gene responsible for retinal degeneration in the rds mouse."
    Connell G., Bascom R., Molday L., Reid D., McInnes R.R., Molday R.S.
    Proc. Natl. Acad. Sci. U.S.A. 88:723-726(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], CHARACTERIZATION.
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6.
    Tissue: Retina.
  4. "Retinal degeneration slow (rds) in mouse results from simple insertion of a t haplotype-specific element into protein-coding exon II."
    Ma J., Norton J.C., Allen A.C., Burns J.B., Hasel K.W., Burns J.L., Sutcliffe J.G., Travis G.H.
    Genomics 28:212-219(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-229.
  5. Cited for: INTERACTION WITH MREG.

Entry informationi

Entry nameiPRPH2_MOUSE
AccessioniPrimary (citable) accession number: P15499
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 1, 1990
Last sequence update: April 1, 1990
Last modified: July 9, 2014
This is version 116 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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