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Protein

Cytochrome c-552

Gene

HTH_0988

Organism
Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Reacts with hydrogenase.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei28Heme (covalent)1
Binding sitei31Heme (covalent)1
Metal bindingi32Iron (heme axial ligand)1
Metal bindingi77Iron (heme axial ligand)1

GO - Molecular functioni

Keywordsi

Biological processElectron transport, Transport
LigandHeme, Iron, Metal-binding

Enzyme and pathway databases

BioCyciHTHE608538:G1GOC-1002-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Cytochrome c-552
Alternative name(s):
Cytochrome c552
Gene namesi
Ordered Locus Names:HTH_0988, Hydth_0984
OrganismiHydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6)
Taxonomic identifieri608538 [NCBI]
Taxonomic lineageiBacteriaAquificaeAquificalesAquificaceaeHydrogenobacter
Proteomesi
  • UP000002574 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 181 PublicationAdd BLAST18
ChainiPRO_000000653119 – 98Cytochrome c-5521 PublicationAdd BLAST80

Post-translational modificationi

Binds 1 heme group per subunit.

Proteomic databases

PRIDEiP15452

Interactioni

Protein-protein interaction databases

STRINGi608538.HTH_0988

Structurei

Secondary structure

198
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi20 – 25Combined sources6
Helixi28 – 30Combined sources3
Beta strandi34 – 36Combined sources3
Beta strandi38 – 40Combined sources3
Helixi43 – 50Combined sources8
Helixi56 – 66Combined sources11
Beta strandi70 – 75Combined sources6
Helixi84 – 95Combined sources12

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1AYGNMR-A19-98[»]
1YNRX-ray2.00A/B/C/D19-98[»]
2AI5NMR-A19-98[»]
3VYMX-ray2.00A19-98[»]
4ZIDX-ray1.80A19-98[»]
5AURX-ray1.26A/C/E/G19-98[»]
5AUSX-ray1.30A/C19-98[»]
ProteinModelPortaliP15452
SMRiP15452
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP15452

Family & Domainsi

Sequence similaritiesi

Belongs to the cytochrome c family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4105W2Z Bacteria
COG4654 LUCA
HOGENOMiHOG000254790
KOiK08738
OMAiFMGPALH
OrthoDBiPOG091H0M5J

Family and domain databases

Gene3Di1.10.760.10, 1 hit
InterProiView protein in InterPro
IPR009056 Cyt_c-like_dom
IPR036909 Cyt_c-like_dom_sf
IPR002324 Cyt_c_ID
PfamiView protein in Pfam
PF00034 Cytochrom_C, 1 hit
PRINTSiPR00606 CYTCHROMECID
SUPFAMiSSF46626 SSF46626, 1 hit
PROSITEiView protein in PROSITE
PS51007 CYTC, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P15452-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKFLLVAVV GLAGITFANE QLAKQKGCMA CHDLKAKKVG PAYADVAKKY
60 70 80 90
AGRKDAVDYL AGKIKKGGSG VWGSVPMPPQ NVTDAEAKQL AQWILSIK
Length:98
Mass (Da):10,431
Last modified:August 1, 1992 - v2
Checksum:iF49713D829DDE927
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X57735 Genomic DNA Translation: CAA40902.1
AP011112 Genomic DNA Translation: BAI69446.1
CP002221 Genomic DNA Translation: ADO45379.1
PIRiS32485
RefSeqiWP_012963626.1, NC_017161.1

Genome annotation databases

EnsemblBacteriaiADO45379; ADO45379; Hydth_0984
BAI69446; BAI69446; HTH_0988
KEGGihte:Hydth_0984
hth:HTH_0988
PATRICifig|608538.5.peg.1004

Similar proteinsi

Entry informationi

Entry nameiCY552_HYDTT
AccessioniPrimary (citable) accession number: P15452
Secondary accession number(s): D3DHZ4, E3EUH7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 1, 1990
Last sequence update: August 1, 1992
Last modified: May 23, 2018
This is version 120 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

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