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Protein

Globin, monomeric component M-IV

Gene
N/A
Organism
Glycera dibranchiata (Bloodworm)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi91Iron (heme axial ligand)1

GO - Molecular functioni

Complete GO annotation...

Keywords - Biological processi

Oxygen transport, Transport

Keywords - Ligandi

Heme, Iron, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Globin, monomeric component M-IV
Alternative name(s):
GMH4
OrganismiGlycera dibranchiata (Bloodworm)
Taxonomic identifieri6350 [NCBI]
Taxonomic lineageiEukaryotaMetazoaLophotrochozoaAnnelidaPolychaetaPalpataAciculataPhyllodocidaGlyceridaeGlycera

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved2 Publications
ChainiPRO_00000525022 – 148Globin, monomeric component M-IVAdd BLAST147

Interactioni

Subunit structurei

Monomer.1 Publication

Structurei

Secondary structure

1148
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi5 – 19Combined sources15
Turni20 – 24Combined sources5
Helixi25 – 38Combined sources14
Helixi40 – 42Combined sources3
Helixi43 – 46Combined sources4
Beta strandi49 – 52Combined sources4
Helixi55 – 72Combined sources18
Turni73 – 75Combined sources3
Helixi77 – 90Combined sources14
Helixi91 – 93Combined sources3
Beta strandi94 – 97Combined sources4
Helixi101 – 103Combined sources3
Helixi104 – 119Combined sources16
Helixi120 – 122Combined sources3
Helixi125 – 146Combined sources22

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1JF4X-ray1.40A2-148[»]
1JL6X-ray1.40A2-148[»]
1VRENMR-A2-148[»]
1VRFNMR-A2-148[»]
ProteinModelPortaliP15447.
SMRiP15447.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP15447.

Family & Domainsi

Sequence similaritiesi

Belongs to the globin family.PROSITE-ProRule annotation

Family and domain databases

Gene3Di1.10.490.10. 1 hit.
InterProiIPR000971. Globin.
IPR009050. Globin-like.
IPR012292. Globin/Proto.
[Graphical view]
PfamiPF00042. Globin. 1 hit.
[Graphical view]
SUPFAMiSSF46458. SSF46458. 1 hit.
PROSITEiPS01033. GLOBIN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P15447-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGLSAAQRQV VASTWKDIAG SDNGAGVGKE CFTKFLSAHH DIAAVFGFSG
60 70 80 90 100
ASDPGVADLG AKVLAQIGVA VSHLGDEGKM VAEMKAVGVR HKGYGYKHIK
110 120 130 140
AEYFEPLGAS LLSAMEHRIG GKMTAAAKDA WAAAYADISG ALISGLQS
Length:148
Mass (Da):15,178
Last modified:January 23, 2007 - v2
Checksum:i9206F7FBE1CAB7F1
GO

Mass spectrometryi

Molecular mass is 15031.6±3.8 Da from positions 2 - 148. Determined by ESI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
J02873 mRNA. Translation: AAA29162.1.
PIRiA33420.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
J02873 mRNA. Translation: AAA29162.1.
PIRiA33420.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1JF4X-ray1.40A2-148[»]
1JL6X-ray1.40A2-148[»]
1VRENMR-A2-148[»]
1VRFNMR-A2-148[»]
ProteinModelPortaliP15447.
SMRiP15447.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Miscellaneous databases

EvolutionaryTraceiP15447.

Family and domain databases

Gene3Di1.10.490.10. 1 hit.
InterProiIPR000971. Globin.
IPR009050. Globin-like.
IPR012292. Globin/Proto.
[Graphical view]
PfamiPF00042. Globin. 1 hit.
[Graphical view]
SUPFAMiSSF46458. SSF46458. 1 hit.
PROSITEiPS01033. GLOBIN. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiGLB4_GLYDI
AccessioniPrimary (citable) accession number: P15447
Secondary accession number(s): P81779
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 1, 1990
Last sequence update: January 23, 2007
Last modified: November 2, 2016
This is version 94 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)

Miscellaneousi

Keywords - Technical termi

3D-structure, Direct protein sequencing

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.