SubmitCancel

Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

P15312

- AGI_HORVU

UniProt

P15312 - AGI_HORVU

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein

Root-specific lectin

Gene
N/A
Organism
Hordeum vulgare (Barley)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at protein leveli

Functioni

Carbohydrate binding.

GO - Molecular functioni

  1. chitin binding Source: UniProtKB-KW
Complete GO annotation...

Keywords - Ligandi

Chitin-binding, Lectin

Protein family/group databases

CAZyiCBM18. Carbohydrate-Binding Module Family 18.

Names & Taxonomyi

Protein namesi
Recommended name:
Root-specific lectin
OrganismiHordeum vulgare (Barley)
Taxonomic identifieri4513 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladePooideaeTriticeaeHordeum

Organism-specific databases

GrameneiP15312.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2626 Reviewed predictionAdd
BLAST
Chaini27 – 212186Root-specific lectinPRO_0000005261Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei27 – 271Pyrrolidone carboxylic acid By similarity
Disulfide bondi29 ↔ 44 By similarity
Disulfide bondi38 ↔ 50 By similarity
Disulfide bondi43 ↔ 57 By similarity
Disulfide bondi61 ↔ 66 By similarity
Disulfide bondi72 ↔ 87 By similarity
Disulfide bondi81 ↔ 93 By similarity
Disulfide bondi86 ↔ 100 By similarity
Disulfide bondi104 ↔ 109 By similarity
Disulfide bondi115 ↔ 130 By similarity
Disulfide bondi124 ↔ 136 By similarity
Disulfide bondi129 ↔ 143 By similarity
Disulfide bondi147 ↔ 152 By similarity
Disulfide bondi158 ↔ 173 By similarity
Disulfide bondi167 ↔ 179 By similarity
Disulfide bondi172 ↔ 186 By similarity
Disulfide bondi190 ↔ 195 By similarity
Glycosylationi206 – 2061N-linked (GlcNAc...) Reviewed prediction

Keywords - PTMi

Disulfide bond, Glycoprotein, Pyrrolidone carboxylic acid

Expressioni

Tissue specificityi

In roots.1 Publication

Developmental stagei

Localized to the coleorhiza, outer cell layers of the radicles, and the root caps of the developing embryo. Later found in the root tip and root cap.1 Publication

Gene expression databases

GenevestigatoriP15312.

Structurei

3D structure databases

ProteinModelPortaliP15312.
SMRiP15312. Positions 27-197.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini27 – 6842Chitin-binding type-1 1Add
BLAST
Domaini69 – 11143Chitin-binding type-1 2Add
BLAST
Domaini112 – 15443Chitin-binding type-1 3Add
BLAST
Domaini155 – 19743Chitin-binding type-1 4Add
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni36 – 383Substrate binding By similarity
Regioni88 – 9912Substrate binding By similarityAdd
BLAST
Regioni140 – 1412Substrate binding By similarity

Sequence similaritiesi

Keywords - Domaini

Repeat, Signal

Family and domain databases

Gene3Di3.30.60.10. 4 hits.
InterProiIPR001002. Chitin-bd_1.
IPR018371. Chitin-binding_1_CS.
[Graphical view]
PfamiPF00187. Chitin_bind_1. 4 hits.
[Graphical view]
PRINTSiPR00451. CHITINBINDNG.
ProDomiPD000609. Chitin_bd_1. 3 hits.
[Graphical view] [Entries sharing at least one domain]
SMARTiSM00270. ChtBD1. 4 hits.
[Graphical view]
SUPFAMiSSF57016. SSF57016. 4 hits.
PROSITEiPS00026. CHIT_BIND_I_1. 4 hits.
PS50941. CHIT_BIND_I_2. 4 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P15312-1 [UniParc]FASTAAdd to Basket

« Hide

MKMMSTRALA LGAAAVLAFA AATAHAQRCG EQGSNMECPN NLCCSQYGYC    50
GMGGDYCGKG CQNGACYTSK RCGTQAGGKT CPNNHCCSQW GYCGFGAEYC 100
GAGCQGGPCR ADIKCGSQAG GKLCPNNLCC SQWGYCGLGS EFCGEGCQGG 150
ACSTDKPCGK AAGGKVCTNN YCCSKWGSCG IGPGYCGAGC QSGGCDGVFA 200
EAIAANSTLV AE 212
Length:212
Mass (Da):21,209
Last modified:April 1, 1990 - v1
Checksum:i8D948245D6B625A5
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
M29280 mRNA. Translation: AAA32969.1.
PIRiT05936.
UniGeneiHv.116.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
M29280 mRNA. Translation: AAA32969.1 .
PIRi T05936.
UniGenei Hv.116.

3D structure databases

ProteinModelPortali P15312.
SMRi P15312. Positions 27-197.
ModBasei Search...
MobiDBi Search...

Protein family/group databases

CAZyi CBM18. Carbohydrate-Binding Module Family 18.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Organism-specific databases

Gramenei P15312.

Gene expression databases

Genevestigatori P15312.

Family and domain databases

Gene3Di 3.30.60.10. 4 hits.
InterProi IPR001002. Chitin-bd_1.
IPR018371. Chitin-binding_1_CS.
[Graphical view ]
Pfami PF00187. Chitin_bind_1. 4 hits.
[Graphical view ]
PRINTSi PR00451. CHITINBINDNG.
ProDomi PD000609. Chitin_bd_1. 3 hits.
[Graphical view ] [Entries sharing at least one domain ]
SMARTi SM00270. ChtBD1. 4 hits.
[Graphical view ]
SUPFAMi SSF57016. SSF57016. 4 hits.
PROSITEi PS00026. CHIT_BIND_I_1. 4 hits.
PS50941. CHIT_BIND_I_2. 4 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Cloning and characterization of root-specific barley lectin."
    Lerner D.R., Raikhel N.V.
    Plant Physiol. 91:124-129(1989) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, DEVELOPMENTAL STAGE, GLYCOSYLATION.

Entry informationi

Entry nameiAGI_HORVU
AccessioniPrimary (citable) accession number: P15312
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 1, 1990
Last sequence update: April 1, 1990
Last modified: September 3, 2014
This is version 82 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi