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P15312

- AGI_HORVU

UniProt

P15312 - AGI_HORVU

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Protein

Root-specific lectin

Gene
N/A
Organism
Hordeum vulgare (Barley)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli

Functioni

Carbohydrate binding.

GO - Molecular functioni

  1. carbohydrate binding Source: UniProtKB-KW
  2. chitin binding Source: UniProtKB-KW
Complete GO annotation...

Keywords - Ligandi

Chitin-binding, Lectin

Protein family/group databases

CAZyiCBM18. Carbohydrate-Binding Module Family 18.

Names & Taxonomyi

Protein namesi
Recommended name:
Root-specific lectin
OrganismiHordeum vulgare (Barley)
Taxonomic identifieri4513 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladePooideaeTriticeaeHordeum

Organism-specific databases

GrameneiP15312.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2626Sequence AnalysisAdd
BLAST
Chaini27 – 212186Root-specific lectinPRO_0000005261Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei27 – 271Pyrrolidone carboxylic acidBy similarity
Disulfide bondi29 ↔ 44PROSITE-ProRule annotation
Disulfide bondi38 ↔ 50PROSITE-ProRule annotation
Disulfide bondi43 ↔ 57PROSITE-ProRule annotation
Disulfide bondi61 ↔ 66PROSITE-ProRule annotation
Disulfide bondi72 ↔ 87PROSITE-ProRule annotation
Disulfide bondi81 ↔ 93PROSITE-ProRule annotation
Disulfide bondi86 ↔ 100PROSITE-ProRule annotation
Disulfide bondi104 ↔ 109PROSITE-ProRule annotation
Disulfide bondi115 ↔ 130PROSITE-ProRule annotation
Disulfide bondi124 ↔ 136PROSITE-ProRule annotation
Disulfide bondi129 ↔ 143PROSITE-ProRule annotation
Disulfide bondi147 ↔ 152PROSITE-ProRule annotation
Disulfide bondi158 ↔ 173PROSITE-ProRule annotation
Disulfide bondi167 ↔ 179PROSITE-ProRule annotation
Disulfide bondi172 ↔ 186PROSITE-ProRule annotation
Disulfide bondi190 ↔ 195PROSITE-ProRule annotation
Glycosylationi206 – 2061N-linked (GlcNAc...)Sequence Analysis

Keywords - PTMi

Disulfide bond, Glycoprotein, Pyrrolidone carboxylic acid

Expressioni

Tissue specificityi

In roots.1 Publication

Developmental stagei

Localized to the coleorhiza, outer cell layers of the radicles, and the root caps of the developing embryo. Later found in the root tip and root cap.1 Publication

Gene expression databases

GenevestigatoriP15312.

Structurei

3D structure databases

ProteinModelPortaliP15312.
SMRiP15312. Positions 27-197.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini27 – 6842Chitin-binding type-1 1PROSITE-ProRule annotationAdd
BLAST
Domaini69 – 11143Chitin-binding type-1 2PROSITE-ProRule annotationAdd
BLAST
Domaini112 – 15443Chitin-binding type-1 3PROSITE-ProRule annotationAdd
BLAST
Domaini155 – 19743Chitin-binding type-1 4PROSITE-ProRule annotationAdd
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni36 – 383Substrate bindingBy similarity
Regioni88 – 9912Substrate bindingBy similarityAdd
BLAST
Regioni140 – 1412Substrate bindingBy similarity

Sequence similaritiesi

Contains 4 chitin-binding type-1 domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, Signal

Family and domain databases

Gene3Di3.30.60.10. 4 hits.
InterProiIPR001002. Chitin-bd_1.
IPR018371. Chitin-binding_1_CS.
[Graphical view]
PfamiPF00187. Chitin_bind_1. 4 hits.
[Graphical view]
PRINTSiPR00451. CHITINBINDNG.
ProDomiPD000609. Chitin_bd_1. 3 hits.
[Graphical view] [Entries sharing at least one domain]
SMARTiSM00270. ChtBD1. 4 hits.
[Graphical view]
SUPFAMiSSF57016. SSF57016. 4 hits.
PROSITEiPS00026. CHIT_BIND_I_1. 4 hits.
PS50941. CHIT_BIND_I_2. 4 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P15312-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKMMSTRALA LGAAAVLAFA AATAHAQRCG EQGSNMECPN NLCCSQYGYC
60 70 80 90 100
GMGGDYCGKG CQNGACYTSK RCGTQAGGKT CPNNHCCSQW GYCGFGAEYC
110 120 130 140 150
GAGCQGGPCR ADIKCGSQAG GKLCPNNLCC SQWGYCGLGS EFCGEGCQGG
160 170 180 190 200
ACSTDKPCGK AAGGKVCTNN YCCSKWGSCG IGPGYCGAGC QSGGCDGVFA
210
EAIAANSTLV AE
Length:212
Mass (Da):21,209
Last modified:April 1, 1990 - v1
Checksum:i8D948245D6B625A5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M29280 mRNA. Translation: AAA32969.1.
PIRiT05936.
UniGeneiHv.116.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M29280 mRNA. Translation: AAA32969.1 .
PIRi T05936.
UniGenei Hv.116.

3D structure databases

ProteinModelPortali P15312.
SMRi P15312. Positions 27-197.
ModBasei Search...
MobiDBi Search...

Protein family/group databases

CAZyi CBM18. Carbohydrate-Binding Module Family 18.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Organism-specific databases

Gramenei P15312.

Gene expression databases

Genevestigatori P15312.

Family and domain databases

Gene3Di 3.30.60.10. 4 hits.
InterProi IPR001002. Chitin-bd_1.
IPR018371. Chitin-binding_1_CS.
[Graphical view ]
Pfami PF00187. Chitin_bind_1. 4 hits.
[Graphical view ]
PRINTSi PR00451. CHITINBINDNG.
ProDomi PD000609. Chitin_bd_1. 3 hits.
[Graphical view ] [Entries sharing at least one domain ]
SMARTi SM00270. ChtBD1. 4 hits.
[Graphical view ]
SUPFAMi SSF57016. SSF57016. 4 hits.
PROSITEi PS00026. CHIT_BIND_I_1. 4 hits.
PS50941. CHIT_BIND_I_2. 4 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Cloning and characterization of root-specific barley lectin."
    Lerner D.R., Raikhel N.V.
    Plant Physiol. 91:124-129(1989) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, DEVELOPMENTAL STAGE, GLYCOSYLATION.

Entry informationi

Entry nameiAGI_HORVU
AccessioniPrimary (citable) accession number: P15312
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 1, 1990
Last sequence update: April 1, 1990
Last modified: October 29, 2014
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3