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P15312

- AGI_HORVU

UniProt

P15312 - AGI_HORVU

Protein

Root-specific lectin

Gene
N/A
Organism
Hordeum vulgare (Barley)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 83 (01 Oct 2014)
      Sequence version 1 (01 Apr 1990)
      Previous versions | rss
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    Functioni

    Carbohydrate binding.

    GO - Molecular functioni

    1. chitin binding Source: UniProtKB-KW

    Keywords - Ligandi

    Chitin-binding, Lectin

    Protein family/group databases

    CAZyiCBM18. Carbohydrate-Binding Module Family 18.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Root-specific lectin
    OrganismiHordeum vulgare (Barley)
    Taxonomic identifieri4513 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladePooideaeTriticeaeHordeum

    Organism-specific databases

    GrameneiP15312.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 2626Sequence AnalysisAdd
    BLAST
    Chaini27 – 212186Root-specific lectinPRO_0000005261Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei27 – 271Pyrrolidone carboxylic acidBy similarity
    Disulfide bondi29 ↔ 44PROSITE-ProRule annotation
    Disulfide bondi38 ↔ 50PROSITE-ProRule annotation
    Disulfide bondi43 ↔ 57PROSITE-ProRule annotation
    Disulfide bondi61 ↔ 66PROSITE-ProRule annotation
    Disulfide bondi72 ↔ 87PROSITE-ProRule annotation
    Disulfide bondi81 ↔ 93PROSITE-ProRule annotation
    Disulfide bondi86 ↔ 100PROSITE-ProRule annotation
    Disulfide bondi104 ↔ 109PROSITE-ProRule annotation
    Disulfide bondi115 ↔ 130PROSITE-ProRule annotation
    Disulfide bondi124 ↔ 136PROSITE-ProRule annotation
    Disulfide bondi129 ↔ 143PROSITE-ProRule annotation
    Disulfide bondi147 ↔ 152PROSITE-ProRule annotation
    Disulfide bondi158 ↔ 173PROSITE-ProRule annotation
    Disulfide bondi167 ↔ 179PROSITE-ProRule annotation
    Disulfide bondi172 ↔ 186PROSITE-ProRule annotation
    Disulfide bondi190 ↔ 195PROSITE-ProRule annotation
    Glycosylationi206 – 2061N-linked (GlcNAc...)Sequence Analysis

    Keywords - PTMi

    Disulfide bond, Glycoprotein, Pyrrolidone carboxylic acid

    Expressioni

    Tissue specificityi

    In roots.1 Publication

    Developmental stagei

    Localized to the coleorhiza, outer cell layers of the radicles, and the root caps of the developing embryo. Later found in the root tip and root cap.1 Publication

    Gene expression databases

    GenevestigatoriP15312.

    Structurei

    3D structure databases

    ProteinModelPortaliP15312.
    SMRiP15312. Positions 27-197.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini27 – 6842Chitin-binding type-1 1PROSITE-ProRule annotationAdd
    BLAST
    Domaini69 – 11143Chitin-binding type-1 2PROSITE-ProRule annotationAdd
    BLAST
    Domaini112 – 15443Chitin-binding type-1 3PROSITE-ProRule annotationAdd
    BLAST
    Domaini155 – 19743Chitin-binding type-1 4PROSITE-ProRule annotationAdd
    BLAST

    Region

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Regioni36 – 383Substrate bindingBy similarity
    Regioni88 – 9912Substrate bindingBy similarityAdd
    BLAST
    Regioni140 – 1412Substrate bindingBy similarity

    Sequence similaritiesi

    Contains 4 chitin-binding type-1 domains.PROSITE-ProRule annotation

    Keywords - Domaini

    Repeat, Signal

    Family and domain databases

    Gene3Di3.30.60.10. 4 hits.
    InterProiIPR001002. Chitin-bd_1.
    IPR018371. Chitin-binding_1_CS.
    [Graphical view]
    PfamiPF00187. Chitin_bind_1. 4 hits.
    [Graphical view]
    PRINTSiPR00451. CHITINBINDNG.
    ProDomiPD000609. Chitin_bd_1. 3 hits.
    [Graphical view] [Entries sharing at least one domain]
    SMARTiSM00270. ChtBD1. 4 hits.
    [Graphical view]
    SUPFAMiSSF57016. SSF57016. 4 hits.
    PROSITEiPS00026. CHIT_BIND_I_1. 4 hits.
    PS50941. CHIT_BIND_I_2. 4 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    P15312-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKMMSTRALA LGAAAVLAFA AATAHAQRCG EQGSNMECPN NLCCSQYGYC    50
    GMGGDYCGKG CQNGACYTSK RCGTQAGGKT CPNNHCCSQW GYCGFGAEYC 100
    GAGCQGGPCR ADIKCGSQAG GKLCPNNLCC SQWGYCGLGS EFCGEGCQGG 150
    ACSTDKPCGK AAGGKVCTNN YCCSKWGSCG IGPGYCGAGC QSGGCDGVFA 200
    EAIAANSTLV AE 212
    Length:212
    Mass (Da):21,209
    Last modified:April 1, 1990 - v1
    Checksum:i8D948245D6B625A5
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    M29280 mRNA. Translation: AAA32969.1.
    PIRiT05936.
    UniGeneiHv.116.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    M29280 mRNA. Translation: AAA32969.1 .
    PIRi T05936.
    UniGenei Hv.116.

    3D structure databases

    ProteinModelPortali P15312.
    SMRi P15312. Positions 27-197.
    ModBasei Search...
    MobiDBi Search...

    Protein family/group databases

    CAZyi CBM18. Carbohydrate-Binding Module Family 18.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Organism-specific databases

    Gramenei P15312.

    Gene expression databases

    Genevestigatori P15312.

    Family and domain databases

    Gene3Di 3.30.60.10. 4 hits.
    InterProi IPR001002. Chitin-bd_1.
    IPR018371. Chitin-binding_1_CS.
    [Graphical view ]
    Pfami PF00187. Chitin_bind_1. 4 hits.
    [Graphical view ]
    PRINTSi PR00451. CHITINBINDNG.
    ProDomi PD000609. Chitin_bd_1. 3 hits.
    [Graphical view ] [Entries sharing at least one domain ]
    SMARTi SM00270. ChtBD1. 4 hits.
    [Graphical view ]
    SUPFAMi SSF57016. SSF57016. 4 hits.
    PROSITEi PS00026. CHIT_BIND_I_1. 4 hits.
    PS50941. CHIT_BIND_I_2. 4 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Cloning and characterization of root-specific barley lectin."
      Lerner D.R., Raikhel N.V.
      Plant Physiol. 91:124-129(1989) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, DEVELOPMENTAL STAGE, GLYCOSYLATION.

    Entry informationi

    Entry nameiAGI_HORVU
    AccessioniPrimary (citable) accession number: P15312
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: April 1, 1990
    Last sequence update: April 1, 1990
    Last modified: October 1, 2014
    This is version 83 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3