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Protein

Coat protein

Gene
N/A
Organism
Narcissus mosaic virus (NMV)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Required for genome encapsidation. Forms ribonucleoprotein complexes along with TGB1 helicase and viral RNA.

GO - Molecular functioni

Keywordsi

Molecular functionRibonucleoprotein

Names & Taxonomyi

Protein namesi
Recommended name:
Coat protein
Alternative name(s):
Capsid protein
Short name:
CP
OrganismiNarcissus mosaic virus (NMV)
Taxonomic identifieri12180 [NCBI]
Taxonomic lineageiVirusesssRNA virusesssRNA positive-strand viruses, no DNA stageTymoviralesAlphaflexiviridaePotexvirus
Virus hostiNarcissus pseudonarcissus (Daffodil) [TaxID: 39639]
Proteomesi
  • UP000008865 Componenti: Genome

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Capsid protein, Helical capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002226221 – 240Coat proteinAdd BLAST240

Family & Domainsi

Sequence similaritiesi

Belongs to the potexvirus capsid protein family.Curated

Phylogenomic databases

OrthoDBiVOG090000QE.

Family and domain databases

InterProiView protein in InterPro
IPR000052. Pltvir_coat.
PfamiView protein in Pfam
PF00286. Flexi_CP. 1 hit.
PRINTSiPR00232. POTXCARLCOAT.
PROSITEiView protein in PROSITE
PS00418. POTEX_CARLAVIRUS_COAT. 1 hit.

Sequencei

Sequence statusi: Complete.

P15100-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATPSTQTTD PKPANADLSD PNRAPSLEDL KKIKYESTTT AVATPAEIQL
60 70 80 90 100
LGDLFKKLGL DANSVAPAMW DLARAYADVQ ASRSAVLSGT TPSNPAITRQ
110 120 130 140 150
ALARQFYVIN ITPRQFCMYF AKVVWNLLLD SNVPPAGWAK QGLPDDCKFA
160 170 180 190 200
GFDFFEGVLS PAALDPADGL IRPPSQREIQ AHSTAKYGAL ARQRYRMETS
210 220 230 240
FPPWLKSLTV GSAVSTPCTP LKHLQNCNRN TSKLKLVCGL
Length:240
Mass (Da):26,097
Last modified:April 1, 1990 - v1
Checksum:i5B0D35A81737C5EB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D13747 Genomic RNA. Translation: BAA02895.1.
PIRiJT0474. VCWGN4.
RefSeqiNP_040782.1. NC_001441.1.

Genome annotation databases

GeneIDi1494019.
KEGGivg:1494019.

Similar proteinsi

Entry informationi

Entry nameiCAPSD_NMV
AccessioniPrimary (citable) accession number: P15100
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 1, 1990
Last sequence update: April 1, 1990
Last modified: February 15, 2017
This is version 73 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families