Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

P14836 (CAPSD_AMCV) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 63. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Capsid protein
Alternative name(s):
Coat protein
p41
Gene names
ORF Names:ORF2
OrganismArtichoke mottled crinkle virus (AMCV)
Taxonomic identifier12142 [NCBI]
Taxonomic lineageVirusesssRNA positive-strand viruses, no DNA stageTombusviridaeTombusvirus
Virus hostCynara cardunculus var. scolymus (Artichoke) (Cynara scolymus) [TaxID: 59895]

Protein attributes

Sequence length388 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 32-35 nm in diameter, and consisting of 180 capsid proteins.

Subunit structure

Homomultimer Potential.

Subcellular location

Virion Potential.

Sequence similarities

Belongs to the icosahedral plant coat protein family.

Ontologies

Keywords
   Cellular componentCapsid protein
T=3 icosahedral capsid protein
Virion
   LigandRNA-binding
Gene Ontology (GO)
   Cellular_componentT=3 icosahedral viral capsid

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionRNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

structural molecule activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 388388Capsid protein
PRO_0000222859

Regions

Region1 – 102102R domain, interaction with RNA
Region56 – 616Involved in encapsidation By similarity
Region103 – 263161S domain, virion shell
Region264 – 388125P domain, projecting

Experimental info

Sequence conflict171T → M in CAA35821. Ref.1
Sequence conflict1491A → R in CAA35821. Ref.1
Sequence conflict2731L → I in CAA35821. Ref.1
Sequence conflict2801L → I in CAA35821. Ref.1
Sequence conflict306 – 3072FR → IC in CAA35821. Ref.1
Sequence conflict3851V → L in CAA35821. Ref.1

Sequences

Sequence LengthMass (Da)Tools
P14836 [UniParc].

Last modified October 5, 2010. Version 2.
Checksum: D8636A99AEC60BC0

FASTA38841,164
        10         20         30         40         50         60 
MAMVKRNNNT GLIPVSTKQL MALGAAAGAS ALQGFVRNNG AAIVGKVVDV GQKVYKAVKK 

        70         80         90        100        110        120 
RGGKKQQQIK HVGGTGGAIM APVAVTRQLT GSKPKFTGKT SGSVTVTHRE YLSQVNMSTG 

       130        140        150        160        170        180 
FQVNGGIVGN LLQLNPLNGT LFSWLPAIAS NFDQYSFNSV LLHYVPLCAT TEVGRVAMYF 

       190        200        210        220        230        240 
DKDSEDPEPA DRVELANYSV LAETAPWAER ALWVPTDRIK RFCDDSSTLD HKLIDLGQLG 

       250        260        270        280        290        300 
VATYGGAGTN AVGDIFISYS VTLYFPQPTN TLLSTRRLDL AGTPVTASGP GYILLTRTPT 

       310        320        330        340        350        360 
VLTMTFRATG TFVISGAYRC LTSTVLGLTG GVNVNSITVV DNVGTSSSFF INCTVSNLPS 

       370        380 
VITFTTTGIT SATIQCNRAT RQNDVSLI 

« Hide

References

[1]"Nucleotide sequence of the 3'-terminal region of artichoke mottled crinkle tombusvirus RNA."
Grieco F., Gallitelli D.
Nucleic Acids Res. 18:1300-1300(1990) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
Strain: Bari-Dr. Gallitelli isolate.
[2]"cDNA cloning of artichoke mottled crinkle virus RNA and localization and sequencing of the coat protein gene."
Tavazza M., Lucioli A., Ancora G., Benvenuto E.
Plant Mol. Biol. 13:685-692(1989) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
Strain: Bari-Dr. Gallitelli isolate.
[3]Tavazza M.
Submitted (OCT-1991) to the EMBL/GenBank/DDBJ databases
Cited for: SEQUENCE REVISION.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
X51456 Genomic RNA. Translation: CAA35821.1.
X16060 Genomic RNA. Translation: CAA34196.1.
X62493 Genomic RNA. Translation: CAA44357.1.
PIRVCVGAC. S08428.
S24926.
RefSeqNP_039810.1. NC_001339.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Proteomic databases

PRIDEP14836.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID1493940.

Family and domain databases

Gene3D2.60.120.20. 1 hit.
InterProIPR000937. Capsid_prot_S-dom_vir.
IPR029053. Viral_coat.
[Graphical view]
PfamPF00729. Viral_coat. 1 hit.
[Graphical view]
PRINTSPR00233. ICOSAHEDRAL.
PROSITEPS00555. ICOSAH_VIR_COAT_S. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameCAPSD_AMCV
AccessionPrimary (citable) accession number: P14836
Entry history
Integrated into UniProtKB/Swiss-Prot: April 1, 1990
Last sequence update: October 5, 2010
Last modified: July 9, 2014
This is version 63 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families