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Protein

Capsid protein

Gene

ORF2

Organism
Artichoke mottled crinkle virus (AMCV)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 32-35 nm in diameter, and consisting of 180 capsid proteins.

GO - Molecular functioni

Keywordsi

Molecular functionRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Capsid protein
Alternative name(s):
Coat protein
p41
Gene namesi
ORF Names:ORF2
OrganismiArtichoke mottled crinkle virus (AMCV)
Taxonomic identifieri12142 [NCBI]
Taxonomic lineageiVirusesssRNA virusesssRNA positive-strand viruses, no DNA stageTombusviridaeTombusvirus
Virus hostiCynara cardunculus var. scolymus (Globe artichoke) (Cynara scolymus) [TaxID: 59895]
Proteomesi
  • UP000202336 Componenti: Genome

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Capsid protein, T=3 icosahedral capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002228591 – 388Capsid proteinAdd BLAST388

Proteomic databases

PRIDEiP14836

Interactioni

Subunit structurei

Homomultimer.Curated

Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni1 – 102R domain, interaction with RNAAdd BLAST102
Regioni56 – 61Involved in encapsidationBy similarity6
Regioni103 – 263S domain, virion shellAdd BLAST161
Regioni264 – 388P domain, projectingAdd BLAST125

Sequence similaritiesi

Family and domain databases

Gene3Di2.60.120.20, 1 hit
InterProiView protein in InterPro
IPR000937 Capsid_prot_S-dom_vir
IPR029053 Viral_coat
PfamiView protein in Pfam
PF00729 Viral_coat, 1 hit
PRINTSiPR00233 ICOSAHEDRAL
PROSITEiView protein in PROSITE
PS00555 ICOSAH_VIR_COAT_S, 1 hit

Sequencei

Sequence statusi: Complete.

P14836-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAMVKRNNNT GLIPVSTKQL MALGAAAGAS ALQGFVRNNG AAIVGKVVDV
60 70 80 90 100
GQKVYKAVKK RGGKKQQQIK HVGGTGGAIM APVAVTRQLT GSKPKFTGKT
110 120 130 140 150
SGSVTVTHRE YLSQVNMSTG FQVNGGIVGN LLQLNPLNGT LFSWLPAIAS
160 170 180 190 200
NFDQYSFNSV LLHYVPLCAT TEVGRVAMYF DKDSEDPEPA DRVELANYSV
210 220 230 240 250
LAETAPWAER ALWVPTDRIK RFCDDSSTLD HKLIDLGQLG VATYGGAGTN
260 270 280 290 300
AVGDIFISYS VTLYFPQPTN TLLSTRRLDL AGTPVTASGP GYILLTRTPT
310 320 330 340 350
VLTMTFRATG TFVISGAYRC LTSTVLGLTG GVNVNSITVV DNVGTSSSFF
360 370 380
INCTVSNLPS VITFTTTGIT SATIQCNRAT RQNDVSLI
Length:388
Mass (Da):41,164
Last modified:October 5, 2010 - v2
Checksum:iD8636A99AEC60BC0
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti17T → M in CAA35821 (PubMed:2320427).Curated1
Sequence conflicti149A → R in CAA35821 (PubMed:2320427).Curated1
Sequence conflicti273L → I in CAA35821 (PubMed:2320427).Curated1
Sequence conflicti280L → I in CAA35821 (PubMed:2320427).Curated1
Sequence conflicti306 – 307FR → IC in CAA35821 (PubMed:2320427).Curated2
Sequence conflicti385V → L in CAA35821 (PubMed:2320427).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X51456 Genomic RNA Translation: CAA35821.1
X16060 Genomic RNA Translation: CAA34196.1
X62493 Genomic RNA Translation: CAA44357.1
PIRiS08428 VCVGAC
S24926
RefSeqiNP_039810.1, NC_001339.1

Genome annotation databases

GeneIDi1493940
KEGGivg:1493940

Similar proteinsi

Entry informationi

Entry nameiCAPSD_AMCV
AccessioniPrimary (citable) accession number: P14836
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 1, 1990
Last sequence update: October 5, 2010
Last modified: March 28, 2018
This is version 70 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome
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Main funding by: National Institutes of Health