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P14836

- CAPSD_AMCV

UniProt

P14836 - CAPSD_AMCV

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Protein

Capsid protein

Gene

ORF2

Organism
Artichoke mottled crinkle virus (AMCV)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 32-35 nm in diameter, and consisting of 180 capsid proteins.

GO - Molecular functioni

  1. RNA binding Source: UniProtKB-KW
  2. structural molecule activity Source: InterPro
Complete GO annotation...

Keywords - Ligandi

RNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Capsid protein
Alternative name(s):
Coat protein
p41
Gene namesi
ORF Names:ORF2
OrganismiArtichoke mottled crinkle virus (AMCV)
Taxonomic identifieri12142 [NCBI]
Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageTombusviridaeTombusvirus
Virus hostiCynara cardunculus var. scolymus (Artichoke) (Cynara scolymus) [TaxID: 59895]

Subcellular locationi

Virion Curated

GO - Cellular componenti

  1. T=3 icosahedral viral capsid Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Capsid protein, T=3 icosahedral capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 388388Capsid proteinPRO_0000222859Add
BLAST

Proteomic databases

PRIDEiP14836.

Interactioni

Subunit structurei

Homomultimer.Curated

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni1 – 102102R domain, interaction with RNAAdd
BLAST
Regioni56 – 616Involved in encapsidationBy similarity
Regioni103 – 263161S domain, virion shellAdd
BLAST
Regioni264 – 388125P domain, projectingAdd
BLAST

Sequence similaritiesi

Family and domain databases

Gene3Di2.60.120.20. 1 hit.
InterProiIPR000937. Capsid_prot_S-dom_vir.
IPR029053. Viral_coat.
[Graphical view]
PfamiPF00729. Viral_coat. 1 hit.
[Graphical view]
PRINTSiPR00233. ICOSAHEDRAL.
PROSITEiPS00555. ICOSAH_VIR_COAT_S. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P14836-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MAMVKRNNNT GLIPVSTKQL MALGAAAGAS ALQGFVRNNG AAIVGKVVDV
60 70 80 90 100
GQKVYKAVKK RGGKKQQQIK HVGGTGGAIM APVAVTRQLT GSKPKFTGKT
110 120 130 140 150
SGSVTVTHRE YLSQVNMSTG FQVNGGIVGN LLQLNPLNGT LFSWLPAIAS
160 170 180 190 200
NFDQYSFNSV LLHYVPLCAT TEVGRVAMYF DKDSEDPEPA DRVELANYSV
210 220 230 240 250
LAETAPWAER ALWVPTDRIK RFCDDSSTLD HKLIDLGQLG VATYGGAGTN
260 270 280 290 300
AVGDIFISYS VTLYFPQPTN TLLSTRRLDL AGTPVTASGP GYILLTRTPT
310 320 330 340 350
VLTMTFRATG TFVISGAYRC LTSTVLGLTG GVNVNSITVV DNVGTSSSFF
360 370 380
INCTVSNLPS VITFTTTGIT SATIQCNRAT RQNDVSLI
Length:388
Mass (Da):41,164
Last modified:October 5, 2010 - v2
Checksum:iD8636A99AEC60BC0
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti17 – 171T → M in CAA35821. (PubMed:2320427)Curated
Sequence conflicti149 – 1491A → R in CAA35821. (PubMed:2320427)Curated
Sequence conflicti273 – 2731L → I in CAA35821. (PubMed:2320427)Curated
Sequence conflicti280 – 2801L → I in CAA35821. (PubMed:2320427)Curated
Sequence conflicti306 – 3072FR → IC in CAA35821. (PubMed:2320427)Curated
Sequence conflicti385 – 3851V → L in CAA35821. (PubMed:2320427)Curated

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X51456 Genomic RNA. Translation: CAA35821.1.
X16060 Genomic RNA. Translation: CAA34196.1.
X62493 Genomic RNA. Translation: CAA44357.1.
PIRiS08428. VCVGAC.
S24926.
RefSeqiNP_039810.1. NC_001339.1.

Genome annotation databases

GeneIDi1493940.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X51456 Genomic RNA. Translation: CAA35821.1 .
X16060 Genomic RNA. Translation: CAA34196.1 .
X62493 Genomic RNA. Translation: CAA44357.1 .
PIRi S08428. VCVGAC.
S24926.
RefSeqi NP_039810.1. NC_001339.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Proteomic databases

PRIDEi P14836.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 1493940.

Family and domain databases

Gene3Di 2.60.120.20. 1 hit.
InterProi IPR000937. Capsid_prot_S-dom_vir.
IPR029053. Viral_coat.
[Graphical view ]
Pfami PF00729. Viral_coat. 1 hit.
[Graphical view ]
PRINTSi PR00233. ICOSAHEDRAL.
PROSITEi PS00555. ICOSAH_VIR_COAT_S. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Nucleotide sequence of the 3'-terminal region of artichoke mottled crinkle tombusvirus RNA."
    Grieco F., Gallitelli D.
    Nucleic Acids Res. 18:1300-1300(1990) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
    Strain: Bari-Dr. Gallitelli isolate.
  2. "cDNA cloning of artichoke mottled crinkle virus RNA and localization and sequencing of the coat protein gene."
    Tavazza M., Lucioli A., Ancora G., Benvenuto E.
    Plant Mol. Biol. 13:685-692(1989) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
    Strain: Bari-Dr. Gallitelli isolate.
  3. Tavazza M.
    Submitted (OCT-1991) to the EMBL/GenBank/DDBJ databases
    Cited for: SEQUENCE REVISION.

Entry informationi

Entry nameiCAPSD_AMCV
AccessioniPrimary (citable) accession number: P14836
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 1, 1990
Last sequence update: October 5, 2010
Last modified: October 1, 2014
This is version 64 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3