Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Capsid protein

Gene

ORF2

Organism
Artichoke mottled crinkle virus (AMCV)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 32-35 nm in diameter, and consisting of 180 capsid proteins.

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

RNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Capsid protein
Alternative name(s):
Coat protein
p41
Gene namesi
ORF Names:ORF2
OrganismiArtichoke mottled crinkle virus (AMCV)
Taxonomic identifieri12142 [NCBI]
Taxonomic lineageiVirusesssRNA virusesssRNA positive-strand viruses, no DNA stageTombusviridaeTombusvirus
Virus hostiCynara cardunculus var. scolymus (Artichoke) (Cynara scolymus) [TaxID: 59895]

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Capsid protein, T=3 icosahedral capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002228591 – 388Capsid proteinAdd BLAST388

Proteomic databases

PRIDEiP14836.

Interactioni

Subunit structurei

Homomultimer.Curated

Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni1 – 102R domain, interaction with RNAAdd BLAST102
Regioni56 – 61Involved in encapsidationBy similarity6
Regioni103 – 263S domain, virion shellAdd BLAST161
Regioni264 – 388P domain, projectingAdd BLAST125

Sequence similaritiesi

Family and domain databases

Gene3Di2.60.120.20. 1 hit.
InterProiIPR000937. Capsid_prot_S-dom_vir.
IPR029053. Viral_coat.
[Graphical view]
PfamiPF00729. Viral_coat. 1 hit.
[Graphical view]
PRINTSiPR00233. ICOSAHEDRAL.
PROSITEiPS00555. ICOSAH_VIR_COAT_S. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P14836-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAMVKRNNNT GLIPVSTKQL MALGAAAGAS ALQGFVRNNG AAIVGKVVDV
60 70 80 90 100
GQKVYKAVKK RGGKKQQQIK HVGGTGGAIM APVAVTRQLT GSKPKFTGKT
110 120 130 140 150
SGSVTVTHRE YLSQVNMSTG FQVNGGIVGN LLQLNPLNGT LFSWLPAIAS
160 170 180 190 200
NFDQYSFNSV LLHYVPLCAT TEVGRVAMYF DKDSEDPEPA DRVELANYSV
210 220 230 240 250
LAETAPWAER ALWVPTDRIK RFCDDSSTLD HKLIDLGQLG VATYGGAGTN
260 270 280 290 300
AVGDIFISYS VTLYFPQPTN TLLSTRRLDL AGTPVTASGP GYILLTRTPT
310 320 330 340 350
VLTMTFRATG TFVISGAYRC LTSTVLGLTG GVNVNSITVV DNVGTSSSFF
360 370 380
INCTVSNLPS VITFTTTGIT SATIQCNRAT RQNDVSLI
Length:388
Mass (Da):41,164
Last modified:October 5, 2010 - v2
Checksum:iD8636A99AEC60BC0
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti17T → M in CAA35821 (PubMed:2320427).Curated1
Sequence conflicti149A → R in CAA35821 (PubMed:2320427).Curated1
Sequence conflicti273L → I in CAA35821 (PubMed:2320427).Curated1
Sequence conflicti280L → I in CAA35821 (PubMed:2320427).Curated1
Sequence conflicti306 – 307FR → IC in CAA35821 (PubMed:2320427).Curated2
Sequence conflicti385V → L in CAA35821 (PubMed:2320427).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X51456 Genomic RNA. Translation: CAA35821.1.
X16060 Genomic RNA. Translation: CAA34196.1.
X62493 Genomic RNA. Translation: CAA44357.1.
PIRiS08428. VCVGAC.
S24926.
RefSeqiNP_039810.1. NC_001339.1.

Genome annotation databases

GeneIDi1493940.
KEGGivg:1493940.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X51456 Genomic RNA. Translation: CAA35821.1.
X16060 Genomic RNA. Translation: CAA34196.1.
X62493 Genomic RNA. Translation: CAA44357.1.
PIRiS08428. VCVGAC.
S24926.
RefSeqiNP_039810.1. NC_001339.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiP14836.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi1493940.
KEGGivg:1493940.

Family and domain databases

Gene3Di2.60.120.20. 1 hit.
InterProiIPR000937. Capsid_prot_S-dom_vir.
IPR029053. Viral_coat.
[Graphical view]
PfamiPF00729. Viral_coat. 1 hit.
[Graphical view]
PRINTSiPR00233. ICOSAHEDRAL.
PROSITEiPS00555. ICOSAH_VIR_COAT_S. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiCAPSD_AMCV
AccessioniPrimary (citable) accession number: P14836
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 1, 1990
Last sequence update: October 5, 2010
Last modified: June 24, 2015
This is version 66 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.