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P14836

- CAPSD_AMCV

UniProt

P14836 - CAPSD_AMCV

Protein

Capsid protein

Gene

ORF2

Organism
Artichoke mottled crinkle virus (AMCV)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 64 (01 Oct 2014)
      Sequence version 2 (05 Oct 2010)
      Previous versions | rss
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    Functioni

    Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 32-35 nm in diameter, and consisting of 180 capsid proteins.

    GO - Molecular functioni

    1. RNA binding Source: UniProtKB-KW
    2. structural molecule activity Source: InterPro

    Keywords - Ligandi

    RNA-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Capsid protein
    Alternative name(s):
    Coat protein
    p41
    Gene namesi
    ORF Names:ORF2
    OrganismiArtichoke mottled crinkle virus (AMCV)
    Taxonomic identifieri12142 [NCBI]
    Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageTombusviridaeTombusvirus
    Virus hostiCynara cardunculus var. scolymus (Artichoke) (Cynara scolymus) [TaxID: 59895]

    Subcellular locationi

    Virion Curated

    GO - Cellular componenti

    1. T=3 icosahedral viral capsid Source: UniProtKB-KW

    Keywords - Cellular componenti

    Capsid protein, T=3 icosahedral capsid protein, Virion

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 388388Capsid proteinPRO_0000222859Add
    BLAST

    Proteomic databases

    PRIDEiP14836.

    Interactioni

    Subunit structurei

    Homomultimer.Curated

    Family & Domainsi

    Region

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Regioni1 – 102102R domain, interaction with RNAAdd
    BLAST
    Regioni56 – 616Involved in encapsidationBy similarity
    Regioni103 – 263161S domain, virion shellAdd
    BLAST
    Regioni264 – 388125P domain, projectingAdd
    BLAST

    Sequence similaritiesi

    Family and domain databases

    Gene3Di2.60.120.20. 1 hit.
    InterProiIPR000937. Capsid_prot_S-dom_vir.
    IPR029053. Viral_coat.
    [Graphical view]
    PfamiPF00729. Viral_coat. 1 hit.
    [Graphical view]
    PRINTSiPR00233. ICOSAHEDRAL.
    PROSITEiPS00555. ICOSAH_VIR_COAT_S. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P14836-1 [UniParc]FASTAAdd to Basket

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    MAMVKRNNNT GLIPVSTKQL MALGAAAGAS ALQGFVRNNG AAIVGKVVDV    50
    GQKVYKAVKK RGGKKQQQIK HVGGTGGAIM APVAVTRQLT GSKPKFTGKT 100
    SGSVTVTHRE YLSQVNMSTG FQVNGGIVGN LLQLNPLNGT LFSWLPAIAS 150
    NFDQYSFNSV LLHYVPLCAT TEVGRVAMYF DKDSEDPEPA DRVELANYSV 200
    LAETAPWAER ALWVPTDRIK RFCDDSSTLD HKLIDLGQLG VATYGGAGTN 250
    AVGDIFISYS VTLYFPQPTN TLLSTRRLDL AGTPVTASGP GYILLTRTPT 300
    VLTMTFRATG TFVISGAYRC LTSTVLGLTG GVNVNSITVV DNVGTSSSFF 350
    INCTVSNLPS VITFTTTGIT SATIQCNRAT RQNDVSLI 388
    Length:388
    Mass (Da):41,164
    Last modified:October 5, 2010 - v2
    Checksum:iD8636A99AEC60BC0
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti17 – 171T → M in CAA35821. (PubMed:2320427)Curated
    Sequence conflicti149 – 1491A → R in CAA35821. (PubMed:2320427)Curated
    Sequence conflicti273 – 2731L → I in CAA35821. (PubMed:2320427)Curated
    Sequence conflicti280 – 2801L → I in CAA35821. (PubMed:2320427)Curated
    Sequence conflicti306 – 3072FR → IC in CAA35821. (PubMed:2320427)Curated
    Sequence conflicti385 – 3851V → L in CAA35821. (PubMed:2320427)Curated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X51456 Genomic RNA. Translation: CAA35821.1.
    X16060 Genomic RNA. Translation: CAA34196.1.
    X62493 Genomic RNA. Translation: CAA44357.1.
    PIRiS08428. VCVGAC.
    S24926.
    RefSeqiNP_039810.1. NC_001339.1.

    Genome annotation databases

    GeneIDi1493940.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X51456 Genomic RNA. Translation: CAA35821.1 .
    X16060 Genomic RNA. Translation: CAA34196.1 .
    X62493 Genomic RNA. Translation: CAA44357.1 .
    PIRi S08428. VCVGAC.
    S24926.
    RefSeqi NP_039810.1. NC_001339.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi P14836.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 1493940.

    Family and domain databases

    Gene3Di 2.60.120.20. 1 hit.
    InterProi IPR000937. Capsid_prot_S-dom_vir.
    IPR029053. Viral_coat.
    [Graphical view ]
    Pfami PF00729. Viral_coat. 1 hit.
    [Graphical view ]
    PRINTSi PR00233. ICOSAHEDRAL.
    PROSITEi PS00555. ICOSAH_VIR_COAT_S. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Nucleotide sequence of the 3'-terminal region of artichoke mottled crinkle tombusvirus RNA."
      Grieco F., Gallitelli D.
      Nucleic Acids Res. 18:1300-1300(1990) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
      Strain: Bari-Dr. Gallitelli isolate.
    2. "cDNA cloning of artichoke mottled crinkle virus RNA and localization and sequencing of the coat protein gene."
      Tavazza M., Lucioli A., Ancora G., Benvenuto E.
      Plant Mol. Biol. 13:685-692(1989) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
      Strain: Bari-Dr. Gallitelli isolate.
    3. Tavazza M.
      Submitted (OCT-1991) to the EMBL/GenBank/DDBJ databases
      Cited for: SEQUENCE REVISION.

    Entry informationi

    Entry nameiCAPSD_AMCV
    AccessioniPrimary (citable) accession number: P14836
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: April 1, 1990
    Last sequence update: October 5, 2010
    Last modified: October 1, 2014
    This is version 64 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programViral Protein Annotation Program

    Miscellaneousi

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3