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P14131

- RS16_MOUSE

UniProt

P14131 - RS16_MOUSE

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Protein
40S ribosomal protein S16
Gene
Rps16
Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 2 out of 5 - Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. RNA binding Source: Ensembl
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. rRNA processing Source: Ensembl
  2. ribosomal small subunit biogenesis Source: Ensembl
  3. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiREACT_196445. SRP-dependent cotranslational protein targeting to membrane.
REACT_198524. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_198528. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S16
Gene namesi
Name:Rps16
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 7

Organism-specific databases

MGIiMGI:98118. Rps16.

Subcellular locationi

GO - Cellular componenti

  1. cytosolic small ribosomal subunit Source: Ensembl
  2. small ribosomal subunit Source: UniProtKB
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11Removed By similarity
Chaini2 – 14614540S ribosomal protein S16
PRO_0000111480Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei60 – 601N6-acetyllysine By similarity

Keywords - PTMi

Acetylation

Proteomic databases

MaxQBiP14131.
PaxDbiP14131.
PRIDEiP14131.

PTM databases

PhosphoSiteiP14131.

Expressioni

Gene expression databases

BgeeiP14131.
CleanExiMM_RPS16.
GenevestigatoriP14131.

Interactioni

Protein-protein interaction databases

BioGridi203004. 3 interactions.
IntActiP14131. 5 interactions.
MINTiMINT-1856568.

Structurei

3D structure databases

ProteinModelPortaliP14131.
SMRiP14131. Positions 6-146.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0103.
GeneTreeiENSGT00390000013067.
HOVERGENiHBG055171.
InParanoidiP14131.
KOiK02960.
OMAiNRRCEPK.
OrthoDBiEOG754HQW.
TreeFamiTF300088.

Family and domain databases

Gene3Di3.30.230.10. 1 hit.
InterProiIPR020568. Ribosomal_S5_D2-typ_fold.
IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
IPR000754. Ribosomal_S9.
IPR020574. Ribosomal_S9_CS.
[Graphical view]
PANTHERiPTHR21569. PTHR21569. 1 hit.
PfamiPF00380. Ribosomal_S9. 1 hit.
[Graphical view]
SUPFAMiSSF54211. SSF54211. 1 hit.
PROSITEiPS00360. RIBOSOMAL_S9. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P14131-1 [UniParc]FASTAAdd to Basket

« Hide

MPSKGPLQSV QVFGRKKTAT AVAHCKRGNG LIKVNGRPLE MIEPRTLQYK    50
LLEPVLLLGK ERFAGVDIRV RVKGGGHVAQ IYAIRQSISK ALVAYYQKYV 100
DEASKKEIKD ILIQYDRTLL VADPRRCESK KFGGPGARAR YQKSYR 146
Length:146
Mass (Da):16,445
Last modified:January 23, 2007 - v4
Checksum:i519BCFB91BB68A15
GO

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti19 – 202AT → L in AAA03646. 1 Publication
Sequence conflicti46 – 461T → A in AAA03646. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
M11408 Unassigned DNA. Translation: AAA03646.1.
AK010613 mRNA. Translation: BAB27062.1.
AK010641 mRNA. Translation: BAB27083.1.
AK011060 mRNA. Translation: BAB27368.1.
AK019400 mRNA. Translation: BAB31702.1.
AK083946 mRNA. Translation: BAC39077.1.
AK088413 mRNA. Translation: BAC40341.1.
AK088716 mRNA. Translation: BAC40524.1.
AK150808 mRNA. Translation: BAE29871.1.
AK168207 mRNA. Translation: BAE40167.1.
AK169328 mRNA. Translation: BAE41081.1.
CCDSiCCDS39858.1.
PIRiS11623. R3MS16.
RefSeqiNP_038675.2. NM_013647.2.
UniGeneiMm.702.

Genome annotation databases

EnsembliENSMUST00000082134; ENSMUSP00000103940; ENSMUSG00000037563.
GeneIDi20055.
KEGGimmu:20055.
UCSCiuc012fgr.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
M11408 Unassigned DNA. Translation: AAA03646.1 .
AK010613 mRNA. Translation: BAB27062.1 .
AK010641 mRNA. Translation: BAB27083.1 .
AK011060 mRNA. Translation: BAB27368.1 .
AK019400 mRNA. Translation: BAB31702.1 .
AK083946 mRNA. Translation: BAC39077.1 .
AK088413 mRNA. Translation: BAC40341.1 .
AK088716 mRNA. Translation: BAC40524.1 .
AK150808 mRNA. Translation: BAE29871.1 .
AK168207 mRNA. Translation: BAE40167.1 .
AK169328 mRNA. Translation: BAE41081.1 .
CCDSi CCDS39858.1.
PIRi S11623. R3MS16.
RefSeqi NP_038675.2. NM_013647.2.
UniGenei Mm.702.

3D structure databases

ProteinModelPortali P14131.
SMRi P14131. Positions 6-146.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 203004. 3 interactions.
IntActi P14131. 5 interactions.
MINTi MINT-1856568.

PTM databases

PhosphoSitei P14131.

Proteomic databases

MaxQBi P14131.
PaxDbi P14131.
PRIDEi P14131.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000082134 ; ENSMUSP00000103940 ; ENSMUSG00000037563 .
GeneIDi 20055.
KEGGi mmu:20055.
UCSCi uc012fgr.1. mouse.

Organism-specific databases

CTDi 6217.
MGIi MGI:98118. Rps16.

Phylogenomic databases

eggNOGi COG0103.
GeneTreei ENSGT00390000013067.
HOVERGENi HBG055171.
InParanoidi P14131.
KOi K02960.
OMAi NRRCEPK.
OrthoDBi EOG754HQW.
TreeFami TF300088.

Enzyme and pathway databases

Reactomei REACT_196445. SRP-dependent cotranslational protein targeting to membrane.
REACT_198524. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_198528. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

NextBioi 297567.
PROi P14131.
SOURCEi Search...

Gene expression databases

Bgeei P14131.
CleanExi MM_RPS16.
Genevestigatori P14131.

Family and domain databases

Gene3Di 3.30.230.10. 1 hit.
InterProi IPR020568. Ribosomal_S5_D2-typ_fold.
IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
IPR000754. Ribosomal_S9.
IPR020574. Ribosomal_S9_CS.
[Graphical view ]
PANTHERi PTHR21569. PTHR21569. 1 hit.
Pfami PF00380. Ribosomal_S9. 1 hit.
[Graphical view ]
SUPFAMi SSF54211. SSF54211. 1 hit.
PROSITEi PS00360. RIBOSOMAL_S9. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Characterization of the multigene family encoding the mouse S16 ribosomal protein: strategy for distinguishing an expressed gene from its processed pseudogene counterparts by an analysis of total genomic DNA."
    Wagner M., Perry R.P.
    Mol. Cell. Biol. 5:3560-3576(1985) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  2. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J and NOD.
    Tissue: Bone marrow, Head, Kidney, Liver, Spinal ganglion and Thymus.

Entry informationi

Entry nameiRS16_MOUSE
AccessioniPrimary (citable) accession number: P14131
Secondary accession number(s): Q3THM9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 1, 1990
Last sequence update: January 23, 2007
Last modified: September 3, 2014
This is version 112 of the entry and version 4 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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