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Protein

40S ribosomal protein S17-B

Gene

RPS17B

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • structural constituent of ribosome Source: SGD

GO - Biological processi

  • cytoplasmic translation Source: SGD
  • ribosomal small subunit assembly Source: SGD

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciYEAST:G3O-29978-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S17-B
Alternative name(s):
RP51B
Gene namesi
Name:RPS17B
Synonyms:RP51B
Ordered Locus Names:YDR447C
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
Proteomesi
  • UP000002311 Componenti: Chromosome IV

Organism-specific databases

EuPathDBiFungiDB:YDR447C.
SGDiS000002855. RPS17B.

Subcellular locationi

GO - Cellular componenti

  • cytosolic small ribosomal subunit Source: SGD

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001415471 – 13640S ribosomal protein S17-BAdd BLAST136

Proteomic databases

MaxQBiP14127.
PRIDEiP14127.

PTM databases

iPTMnetiP14127.

Interactioni

Subunit structurei

Component of the small ribosomal subunit. Mature ribosomes consist of a small (40S) and a large (60S) subunit. The 40S subunit contains 32 different proteins (encoded by 56 genes) and 1 molecule of RNA (18S). The 60S subunit contains 46 different proteins (encoded by 81 genes) and 3 molecules of RNA (25S, 5.8S and 5S).1 Publication

Protein-protein interaction databases

BioGridi32502. 158 interactors.
IntActiP14127. 62 interactors.
MINTiMINT-4482711.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
5TGAX-ray3.30C7/c72-126[»]
ProteinModelPortaliP14127.
SMRiP14127.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S17e family.Curated

Phylogenomic databases

HOGENOMiHOG000227166.
InParanoidiP14127.
KOiK02962.
OMAiYTTHLMR.

Family and domain databases

Gene3Di1.10.60.20. 1 hit.
HAMAPiMF_00511. Ribosomal_S17e. 1 hit.
InterProiView protein in InterPro
IPR001210. Ribosomal_S17e.
IPR018273. Ribosomal_S17e_CS.
PANTHERiPTHR10732. PTHR10732. 1 hit.
PfamiView protein in Pfam
PF00833. Ribosomal_S17e. 1 hit.
SUPFAMiSSF116820. SSF116820. 1 hit.
PROSITEiView protein in PROSITE
PS00712. RIBOSOMAL_S17E. 1 hit.

Sequencei

Sequence statusi: Complete.

P14127-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGRVRTKTVK RASKALIERY YPKLTLDFQT NKRLCDEIAT IQSKRLRNKI
60 70 80 90 100
AGYTTHLMKR IQKGPVRGIS FKLQEEERER KDQYVPEVSA LDLSRSNGVL
110 120 130
NVDNQTSDLV KSLGLKLPLS VINVSAQRDR RYRKRN
Length:136
Mass (Da):15,803
Last modified:January 1, 1990 - v1
Checksum:i83EE5382870EA289
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
K02480 Genomic DNA. Translation: AAA34991.1.
U33007 Genomic DNA. Translation: AAB64890.1.
BK006938 Genomic DNA. Translation: DAA12282.1.
PIRiS20161. R4BY7B.
RefSeqiNP_010735.3. NM_001180755.3.

Genome annotation databases

EnsemblFungiiYDR447C; YDR447C; YDR447C.
GeneIDi852058.
KEGGisce:YDR447C.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
K02480 Genomic DNA. Translation: AAA34991.1.
U33007 Genomic DNA. Translation: AAB64890.1.
BK006938 Genomic DNA. Translation: DAA12282.1.
PIRiS20161. R4BY7B.
RefSeqiNP_010735.3. NM_001180755.3.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
5TGAX-ray3.30C7/c72-126[»]
ProteinModelPortaliP14127.
SMRiP14127.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi32502. 158 interactors.
IntActiP14127. 62 interactors.
MINTiMINT-4482711.

PTM databases

iPTMnetiP14127.

Proteomic databases

MaxQBiP14127.
PRIDEiP14127.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiYDR447C; YDR447C; YDR447C.
GeneIDi852058.
KEGGisce:YDR447C.

Organism-specific databases

EuPathDBiFungiDB:YDR447C.
SGDiS000002855. RPS17B.

Phylogenomic databases

HOGENOMiHOG000227166.
InParanoidiP14127.
KOiK02962.
OMAiYTTHLMR.

Enzyme and pathway databases

BioCyciYEAST:G3O-29978-MONOMER.

Miscellaneous databases

PROiP14127.

Family and domain databases

Gene3Di1.10.60.20. 1 hit.
HAMAPiMF_00511. Ribosomal_S17e. 1 hit.
InterProiView protein in InterPro
IPR001210. Ribosomal_S17e.
IPR018273. Ribosomal_S17e_CS.
PANTHERiPTHR10732. PTHR10732. 1 hit.
PfamiView protein in Pfam
PF00833. Ribosomal_S17e. 1 hit.
SUPFAMiSSF116820. SSF116820. 1 hit.
PROSITEiView protein in PROSITE
PS00712. RIBOSOMAL_S17E. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRS17B_YEAST
AccessioniPrimary (citable) accession number: P14127
Secondary accession number(s): D6VT72
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 1, 1990
Last sequence update: January 1, 1990
Last modified: February 15, 2017
This is version 140 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 30500 molecules/cell in log phase SD medium.1 Publication
There are 2 genes for S17 in yeast.

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families
  4. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  5. Yeast chromosome IV
    Yeast (Saccharomyces cerevisiae) chromosome IV: entries and gene names

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.