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P14125

- RL18A_HALMA

UniProt

P14125 - RL18A_HALMA

Protein

50S ribosomal protein L18Ae

Gene

rpl18a

Organism
Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli
  1. Functioni

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-KW
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L18AeUniRule annotation
    Alternative name(s):
    50S ribosomal protein L20eUniRule annotation
    50S ribosomal protein LXUniRule annotation
    HL32
    Gene namesi
    Name:rpl18aUniRule annotation
    Synonyms:rpl20eUniRule annotation, rplXUniRule annotation
    Ordered Locus Names:rrnAC3115.1
    OrganismiHaloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui)
    Taxonomic identifieri272569 [NCBI]
    Taxonomic lineageiArchaeaEuryarchaeotaHalobacteriaHalobacterialesHalobacteriaceaeHaloarcula
    ProteomesiUP000001169: Chromosome I

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11Removed1 Publication
    Chaini2 – 565550S ribosomal protein L18AePRO_0000153696Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit. Binds 23S rRNA.1 PublicationUniRule annotation

    Structurei

    Secondary structure

    1
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi4 – 107
    Beta strandi13 – 153
    Beta strandi17 – 237
    Helixi28 – 4316
    Turni47 – 493
    Beta strandi51 – 566

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    4I4MX-ray2.4061-56[»]
    ProteinModelPortaliP14125.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L18Ae family. Ribosomal protein LX subfamily.UniRule annotation

    Family and domain databases

    HAMAPiMF_00273. Ribosomal_L18Ae.
    InterProiIPR028877. 50S_L18Ae/Ribosomal_L18a/L20.
    IPR002768. 50S_L18Ae_archaea.
    IPR023573. Ribosomal_L18a/LX.
    [Graphical view]
    PfamiPF01775. Ribosomal_L18ae. 1 hit.
    [Graphical view]
    ProDomiPD010302. Ribosomal_LX. 1 hit.
    [Graphical view] [Entries sharing at least one domain]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    P14125-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSTYTVRGSF PARDGPQQFE KEVEAPNENV AEERVYSDFG SQHNLKRTQI   50
    TIEEVA 56
    Length:56
    Mass (Da):6,388
    Last modified:January 23, 2007 - v2
    Checksum:i0800E309FC986550
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AY596297 Genomic DNA. No translation available.
    PIRiS06848. R5HS32.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AY596297 Genomic DNA. No translation available.
    PIRi S06848. R5HS32.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    4I4M X-ray 2.40 6 1-56 [» ]
    ProteinModelPortali P14125.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Family and domain databases

    HAMAPi MF_00273. Ribosomal_L18Ae.
    InterProi IPR028877. 50S_L18Ae/Ribosomal_L18a/L20.
    IPR002768. 50S_L18Ae_archaea.
    IPR023573. Ribosomal_L18a/LX.
    [Graphical view ]
    Pfami PF01775. Ribosomal_L18ae. 1 hit.
    [Graphical view ]
    ProDomi PD010302. Ribosomal_LX. 1 hit.
    [Graphical view ] [Entries sharing at least one domain ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809.
    2. "Primary structures of five ribosomal proteins from the archaebacterium Halobacterium marismortui and their structural relationships to eubacterial and eukaryotic ribosomal proteins."
      Hatakeyama T., Kaufmann F., Schroeter B., Hatakeyama T.
      Eur. J. Biochem. 185:685-693(1989) [PubMed] [Europe PMC] [Abstract]
      Cited for: PROTEIN SEQUENCE OF 2-56, SUBUNIT.
    3. "Revisiting the Haloarcula marismortui 50S ribosomal subunit model."
      Gabdulkhakov A., Nikonov S., Garber M.
      Acta Crystallogr. D 69:997-1004(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (2.4 ANGSTROMS) OF THE 50S SUBUNIT, RRNA-BINDING.

    Entry informationi

    Entry nameiRL18A_HALMA
    AccessioniPrimary (citable) accession number: P14125
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: January 1, 1990
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 70 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3