P14122 (RL11_HALMA) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
50S ribosomal protein L11P

Alternative name(s):
Hmal11

Gene names

Name:	rpl11p
Ordered Locus Names:	rrnAC1414

Organism

Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui) [Complete proteome] [HAMAP]

Taxonomic identifier

272569 [NCBI]

Taxonomic lineage

cellular organisms › Archaea › Euryarchaeota › Halobacteria › Halobacteriales › Halobacteriaceae › Haloarcula › Haloarcula marismortui

Protein attributes

Sequence length	162 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Evidence at protein level

General annotation (Comments)

Function	This protein binds directly to 23S ribosomal RNA By similarity. HAMAP-Rule MF_00736_A
Subunit structure	Part of the 50S ribosomal subunit.
Sequence similarities	Belongs to the ribosomal protein L11P family.

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	3D-structure Complete proteome Direct protein sequencing
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Initiator methionine

1

1

Removed Ref.3

Chain

2 – 162

161

50S ribosomal protein L11P HAMAP-Rule MF_00736_A

PRO_0000104431

Secondary structure

1

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162

Helix Strand Turn

Details...

Turn

17 – 20

4

Beta strand

31 – 34

4

Helix

35 – 41

7

Beta strand

50 – 56

7

Beta strand

58 – 60

3

Beta strand

62 – 66

5

Helix

71 – 77

7

Turn

88 – 90

3

Beta strand

94 – 97

4

Helix

98 – 107

10

Turn

108 – 111

4

Helix

117 – 127

11

Turn

128 – 132

5

Beta strand

133 – 136

4

Sequences

	Sequence		Length	Mass (Da)
	P14122 [UniParc]. Last modified January 23, 2007. Version 3. Checksum: E64E6802B49208B8	FASTA	162	17,089
	10 20 30 40 50 60 MAGTIEVLVP GGEANPGPPL GPELGPTPVD VQAVVQEIND QTAAFDGTEV PVTVKYDDDG 70 80 90 100 110 120 SFEIEVGVPP TAELIKDEAG FETGSGEPQE DFVADLSVDQ VKQIAEQKHP DLLSYDLTNA 130 140 150 160 AKEVVGTCTS LGVTIEGENP REFKERIDAG EYDDVFAAEA QA

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Nucleotide sequence of the genes encoding the L11, L1, L10 and L12 equivalent ribosomal proteins from the archaebacterium Halobacterium marismortui." Arndt E., Weigel C. Nucleic Acids Res. 18:1285-1285(1990) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[2]	"Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea." Baliga N.S., Bonneau R., Facciotti M.T., Pan M., Glusman G., Deutsch E.W., Shannon P., Chiu Y., Weng R.S., Gan R.R., Hung P., Date S.V., Marcotte E., Hood L., Ng W.V. Genome Res. 14:2221-2234(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809.
[3]	"Extended N-terminal sequencing of proteins of archaebacterial ribosomes blotted from two-dimensional gels onto glass fiber and poly(vinylidene difluoride) membrane." Walsh M.J., McDougall J., Wittmann-Liebold B. Biochemistry 27:6867-6876(1988) [PubMed] [Europe PMC] [Abstract] Cited for: PROTEIN SEQUENCE OF 2-28.
[4]	"Placement of protein and RNA structures into a 5 A-resolution map of the 50S ribosomal subunit." Ban N., Nissen P., Hansen J., Capel M., Moore P.B., Steitz T.A. Nature 400:841-847(1999) [PubMed] [Europe PMC] [Abstract] Cited for: 3D-STRUCTURE MODELING.
+	Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

X51430 Genomic DNA. Translation: CAA35793.1.
AY596297 Genomic DNA. Translation: AAV46342.1.

PIR

R5HS11. S08420.

RefSeq

YP_136048.1. NC_006396.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1C04	X-ray	5.00	C	79-88	[»]
1S72	X-ray	2.40	I	1-162	[»]
1VQ4	X-ray	2.70	I	1-162	[»]
1VQ5	X-ray	2.60	I	1-162	[»]
1VQ6	X-ray	2.70	I	1-162	[»]
1VQ7	X-ray	2.50	I	1-162	[»]
1VQ8	X-ray	2.20	I	1-162	[»]
1VQ9	X-ray	2.40	I	1-162	[»]
1VQK	X-ray	2.30	I	1-162	[»]
1VQL	X-ray	2.30	I	1-162	[»]
1VQM	X-ray	2.30	I	1-162	[»]
1VQN	X-ray	2.40	I	1-162	[»]
1VQO	X-ray	2.20	I	1-162	[»]
1VQP	X-ray	2.25	I	1-162	[»]
1YHQ	X-ray	2.40	I	1-162	[»]
1YI2	X-ray	2.65	I	1-162	[»]
1YIJ	X-ray	2.60	I	1-162	[»]
1YIT	X-ray	2.80	I	1-162	[»]
1YJ9	X-ray	2.90	I	1-162	[»]
1YJN	X-ray	3.00	I	1-162	[»]
1YJW	X-ray	2.90	I	1-162	[»]
2OTJ	X-ray	2.90	I	2-162	[»]
2OTL	X-ray	2.70	I	1-162	[»]
2QA4	X-ray	3.00	I	1-162	[»]
2QEX	X-ray	2.90	I	1-162	[»]
3CC2	X-ray	2.40	I	1-162	[»]
3CC4	X-ray	2.70	I	1-162	[»]
3CC7	X-ray	2.70	I	1-162	[»]
3CCE	X-ray	2.75	I	1-162	[»]
3CCJ	X-ray	2.70	I	1-162	[»]
3CCL	X-ray	2.90	I	1-162	[»]
3CCM	X-ray	2.55	I	1-162	[»]
3CCQ	X-ray	2.90	I	1-162	[»]
3CCR	X-ray	3.00	I	1-162	[»]
3CCS	X-ray	2.95	I	1-162	[»]
3CCU	X-ray	2.80	I	1-162	[»]
3CCV	X-ray	2.90	I	1-162	[»]
3CD6	X-ray	2.75	I	1-162	[»]
3CMA	X-ray	2.80	I	1-162	[»]
3CME	X-ray	2.95	I	1-162	[»]
3G4S	X-ray	3.20	I	67-136	[»]
3G6E	X-ray	2.70	I	67-136	[»]
3G71	X-ray	2.85	I	67-136	[»]
3I55	X-ray	3.11	I	1-162	[»]
3I56	X-ray	2.90	I	1-162	[»]

ProteinModelPortal

P14122.

SMR

P14122. Positions 5-136.

ModBase

Search...

Protein-protein interaction databases

STRING

272569.rrnAC1414.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

EnsemblBacteria

AAV46342; AAV46342; rrnAC1414.

GeneID

3128412.

KEGG

hma:rrnAC1414.

Organism-specific databases

CMR

Search...

Phylogenomic databases

eggNOG

COG0080.

HOGENOM

HOG000082124.

KO

K02867.

OMA

KQFNAKT.

ProtClustDB

PRK01143.

Enzyme and pathway databases

BioCyc

HMAR272569:GJDH-1277-MONOMER.

Family and domain databases

Gene3D

1.10.10.250. 1 hit.
3.30.1550.10. 1 hit.

HAMAP

MF_00736_A. Ribosomal_L11_A.

InterPro

IPR000911. Ribosomal_L11.
IPR020786. Ribosomal_L11_arc.
IPR020783. Ribosomal_L11_C.
IPR020785. Ribosomal_L11_CS.
IPR020784. Ribosomal_L11_N.
[Graphical view]

PANTHER

PTHR11661. PTHR11661. 1 hit.

Pfam

PF00298. Ribosomal_L11. 1 hit.
PF03946. Ribosomal_L11_N. 1 hit.
[Graphical view]

SMART

SM00649. RL11. 1 hit.
[Graphical view]

SUPFAM

SSF46906. Ribosomal_L11. 1 hit.
SSF54747. Ribosomal_L11. 1 hit.

PROSITE

PS00359. RIBOSOMAL_L11. 1 hit.
[Graphical view]

ProtoNet

Search...

Other

EvolutionaryTrace

P14122.

Entry information

Entry name

RL11_HALMA

Accession

Primary (citable) accession number: P14122
Secondary accession number(s): Q5V2B0

Entry history

Integrated into UniProtKB/Swiss-Prot:	January 1, 1990
Last sequence update:	January 23, 2007
Last modified:	May 1, 2013
This is version 102 of the entry and version 3 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program