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Protein

50S ribosomal protein L11

Gene

rpl11

Organism
Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L11UniRule annotation
Alternative name(s):
Hmal11
Gene namesi
Name:rpl11UniRule annotation
Ordered Locus Names:rrnAC1414
OrganismiHaloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui)
Taxonomic identifieri272569 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaHalobacteriaHalobacterialesHalobacteriaceaeHaloarcula
Proteomesi
  • UP000001169 Componenti: Chromosome I

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved1 Publication
ChainiPRO_00001044312 – 16250S ribosomal protein L11Add BLAST161

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Forms a heptameric L10(L12)2(L12)2(L12)2 complex, where L10 forms an elongated spine to which 3 L12 dimers bind in a sequential fashion (Probable).Curated

Protein-protein interaction databases

STRINGi272569.rrnAC1414.

Structurei

Secondary structure

1162
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Turni17 – 20Combined sources4
Beta strandi31 – 34Combined sources4
Helixi35 – 41Combined sources7
Beta strandi50 – 56Combined sources7
Beta strandi58 – 60Combined sources3
Beta strandi62 – 66Combined sources5
Helixi71 – 77Combined sources7
Turni88 – 90Combined sources3
Beta strandi94 – 97Combined sources4
Helixi98 – 107Combined sources10
Turni108 – 111Combined sources4
Helixi117 – 127Combined sources11
Turni128 – 132Combined sources5
Beta strandi133 – 136Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1C04X-ray5.00C79-88[»]
1S72X-ray2.40I1-162[»]
1VQ4X-ray2.70I1-162[»]
1VQ5X-ray2.60I1-162[»]
1VQ6X-ray2.70I1-162[»]
1VQ7X-ray2.50I1-162[»]
1VQ8X-ray2.20I1-162[»]
1VQ9X-ray2.40I1-162[»]
1VQKX-ray2.30I1-162[»]
1VQLX-ray2.30I1-162[»]
1VQMX-ray2.30I1-162[»]
1VQNX-ray2.40I1-162[»]
1VQOX-ray2.20I1-162[»]
1VQPX-ray2.25I1-162[»]
1YHQX-ray2.40I1-162[»]
1YI2X-ray2.65I1-162[»]
1YIJX-ray2.60I1-162[»]
1YITX-ray2.80I1-162[»]
1YJ9X-ray2.90I1-162[»]
1YJNX-ray3.00I1-162[»]
1YJWX-ray2.90I1-162[»]
2OTJX-ray2.90I2-162[»]
2OTLX-ray2.70I1-162[»]
2QA4X-ray3.00I1-162[»]
2QEXX-ray2.90I1-162[»]
3CC2X-ray2.40I1-162[»]
3CC4X-ray2.70I1-162[»]
3CC7X-ray2.70I1-162[»]
3CCEX-ray2.75I1-162[»]
3CCJX-ray2.70I1-162[»]
3CCLX-ray2.90I1-162[»]
3CCMX-ray2.55I1-162[»]
3CCQX-ray2.90I1-162[»]
3CCRX-ray3.00I1-162[»]
3CCSX-ray2.95I1-162[»]
3CCUX-ray2.80I1-162[»]
3CCVX-ray2.90I1-162[»]
3CD6X-ray2.75I1-162[»]
3CMAX-ray2.80I1-162[»]
3CMEX-ray2.95I1-162[»]
3G4SX-ray3.20I67-136[»]
3G6EX-ray2.70I67-136[»]
3G71X-ray2.85I67-136[»]
3I55X-ray3.11I1-162[»]
3I56X-ray2.90I1-162[»]
4V9FX-ray2.40I1-162[»]
ProteinModelPortaliP14122.
SMRiP14122.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP14122.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L11P family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG04372. Archaea.
COG0080. LUCA.
HOGENOMiHOG000082124.
KOiK02867.
OMAiCKQFNAK.

Family and domain databases

CDDicd00349. Ribosomal_L11. 1 hit.
Gene3Di1.10.10.250. 1 hit.
3.30.1550.10. 1 hit.
HAMAPiMF_00736. Ribosomal_L11. 1 hit.
InterProiIPR000911. Ribosomal_L11/L12.
IPR020783. Ribosomal_L11_C.
IPR020785. Ribosomal_L11_CS.
IPR020784. Ribosomal_L11_N.
[Graphical view]
PANTHERiPTHR11661. PTHR11661. 1 hit.
PfamiPF00298. Ribosomal_L11. 1 hit.
PF03946. Ribosomal_L11_N. 1 hit.
[Graphical view]
SMARTiSM00649. RL11. 1 hit.
[Graphical view]
SUPFAMiSSF46906. SSF46906. 1 hit.
SSF54747. SSF54747. 1 hit.
PROSITEiPS00359. RIBOSOMAL_L11. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P14122-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAGTIEVLVP GGEANPGPPL GPELGPTPVD VQAVVQEIND QTAAFDGTEV
60 70 80 90 100
PVTVKYDDDG SFEIEVGVPP TAELIKDEAG FETGSGEPQE DFVADLSVDQ
110 120 130 140 150
VKQIAEQKHP DLLSYDLTNA AKEVVGTCTS LGVTIEGENP REFKERIDAG
160
EYDDVFAAEA QA
Length:162
Mass (Da):17,089
Last modified:January 23, 2007 - v3
Checksum:iE64E6802B49208B8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X51430 Genomic DNA. Translation: CAA35793.1.
AY596297 Genomic DNA. Translation: AAV46342.1.
PIRiS08420. R5HS11.
RefSeqiWP_011223608.1. NC_006396.1.

Genome annotation databases

EnsemblBacteriaiAAV46342; AAV46342; rrnAC1414.
GeneIDi3128412.
KEGGihma:rrnAC1414.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X51430 Genomic DNA. Translation: CAA35793.1.
AY596297 Genomic DNA. Translation: AAV46342.1.
PIRiS08420. R5HS11.
RefSeqiWP_011223608.1. NC_006396.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1C04X-ray5.00C79-88[»]
1S72X-ray2.40I1-162[»]
1VQ4X-ray2.70I1-162[»]
1VQ5X-ray2.60I1-162[»]
1VQ6X-ray2.70I1-162[»]
1VQ7X-ray2.50I1-162[»]
1VQ8X-ray2.20I1-162[»]
1VQ9X-ray2.40I1-162[»]
1VQKX-ray2.30I1-162[»]
1VQLX-ray2.30I1-162[»]
1VQMX-ray2.30I1-162[»]
1VQNX-ray2.40I1-162[»]
1VQOX-ray2.20I1-162[»]
1VQPX-ray2.25I1-162[»]
1YHQX-ray2.40I1-162[»]
1YI2X-ray2.65I1-162[»]
1YIJX-ray2.60I1-162[»]
1YITX-ray2.80I1-162[»]
1YJ9X-ray2.90I1-162[»]
1YJNX-ray3.00I1-162[»]
1YJWX-ray2.90I1-162[»]
2OTJX-ray2.90I2-162[»]
2OTLX-ray2.70I1-162[»]
2QA4X-ray3.00I1-162[»]
2QEXX-ray2.90I1-162[»]
3CC2X-ray2.40I1-162[»]
3CC4X-ray2.70I1-162[»]
3CC7X-ray2.70I1-162[»]
3CCEX-ray2.75I1-162[»]
3CCJX-ray2.70I1-162[»]
3CCLX-ray2.90I1-162[»]
3CCMX-ray2.55I1-162[»]
3CCQX-ray2.90I1-162[»]
3CCRX-ray3.00I1-162[»]
3CCSX-ray2.95I1-162[»]
3CCUX-ray2.80I1-162[»]
3CCVX-ray2.90I1-162[»]
3CD6X-ray2.75I1-162[»]
3CMAX-ray2.80I1-162[»]
3CMEX-ray2.95I1-162[»]
3G4SX-ray3.20I67-136[»]
3G6EX-ray2.70I67-136[»]
3G71X-ray2.85I67-136[»]
3I55X-ray3.11I1-162[»]
3I56X-ray2.90I1-162[»]
4V9FX-ray2.40I1-162[»]
ProteinModelPortaliP14122.
SMRiP14122.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272569.rrnAC1414.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAV46342; AAV46342; rrnAC1414.
GeneIDi3128412.
KEGGihma:rrnAC1414.

Phylogenomic databases

eggNOGiarCOG04372. Archaea.
COG0080. LUCA.
HOGENOMiHOG000082124.
KOiK02867.
OMAiCKQFNAK.

Miscellaneous databases

EvolutionaryTraceiP14122.

Family and domain databases

CDDicd00349. Ribosomal_L11. 1 hit.
Gene3Di1.10.10.250. 1 hit.
3.30.1550.10. 1 hit.
HAMAPiMF_00736. Ribosomal_L11. 1 hit.
InterProiIPR000911. Ribosomal_L11/L12.
IPR020783. Ribosomal_L11_C.
IPR020785. Ribosomal_L11_CS.
IPR020784. Ribosomal_L11_N.
[Graphical view]
PANTHERiPTHR11661. PTHR11661. 1 hit.
PfamiPF00298. Ribosomal_L11. 1 hit.
PF03946. Ribosomal_L11_N. 1 hit.
[Graphical view]
SMARTiSM00649. RL11. 1 hit.
[Graphical view]
SUPFAMiSSF46906. SSF46906. 1 hit.
SSF54747. SSF54747. 1 hit.
PROSITEiPS00359. RIBOSOMAL_L11. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL11_HALMA
AccessioniPrimary (citable) accession number: P14122
Secondary accession number(s): Q5V2B0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 1, 1990
Last sequence update: January 23, 2007
Last modified: November 2, 2016
This is version 126 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.