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P14122

- RL11_HALMA

UniProt

P14122 - RL11_HALMA

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Protein

50S ribosomal protein L11

Gene
rpl11, rrnAC1414
Organism
Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at protein leveli

Functioni

Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.UniRule annotation

GO - Molecular functioni

  1. large ribosomal subunit rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciHMAR272569:GJDH-1277-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L11
Alternative name(s):
Hmal11
Gene namesi
Name:rpl11
Ordered Locus Names:rrnAC1414
OrganismiHaloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui)
Taxonomic identifieri272569 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaHalobacteriaHalobacterialesHalobacteriaceaeHaloarcula
ProteomesiUP000001169: Chromosome I

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11Removed1 Publication
Chaini2 – 16216150S ribosomal protein L11UniRule annotationPRO_0000104431Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Forms a heptameric L10(L12)2(L12)2(L12)2 complex, where L10 forms an elongated spine to which 3 L12 dimers bind in a sequential fashion Inferred.1 Publication

Protein-protein interaction databases

STRINGi272569.rrnAC1414.

Structurei

Secondary structure

1
162
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi12 – 143
Turni18 – 236
Turni33 – 364
Helixi37 – 393
Beta strandi52 – 554
Beta strandi59 – 613
Beta strandi63 – 653
Helixi71 – 777
Turni88 – 903
Beta strandi94 – 974
Helixi98 – 10710
Turni108 – 1114
Helixi117 – 12711
Turni128 – 1325
Beta strandi133 – 1364
Helixi143 – 1486
Turni149 – 1524
Helixi153 – 1564

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1C04X-ray5.00C79-88[»]
1S72X-ray2.40I1-162[»]
1VQ4X-ray2.70I1-162[»]
1VQ5X-ray2.60I1-162[»]
1VQ6X-ray2.70I1-162[»]
1VQ7X-ray2.50I1-162[»]
1VQ8X-ray2.20I1-162[»]
1VQ9X-ray2.40I1-162[»]
1VQKX-ray2.30I1-162[»]
1VQLX-ray2.30I1-162[»]
1VQMX-ray2.30I1-162[»]
1VQNX-ray2.40I1-162[»]
1VQOX-ray2.20I1-162[»]
1VQPX-ray2.25I1-162[»]
1YHQX-ray2.40I1-162[»]
1YI2X-ray2.65I1-162[»]
1YIJX-ray2.60I1-162[»]
1YITX-ray2.80I1-162[»]
1YJ9X-ray2.90I1-162[»]
1YJNX-ray3.00I1-162[»]
1YJWX-ray2.90I1-162[»]
2OTJX-ray2.90I2-162[»]
2OTLX-ray2.70I1-162[»]
2QA4X-ray3.00I1-162[»]
2QEXX-ray2.90I1-162[»]
3CC2X-ray2.40I1-162[»]
3CC4X-ray2.70I1-162[»]
3CC7X-ray2.70I1-162[»]
3CCEX-ray2.75I1-162[»]
3CCJX-ray2.70I1-162[»]
3CCLX-ray2.90I1-162[»]
3CCMX-ray2.55I1-162[»]
3CCQX-ray2.90I1-162[»]
3CCRX-ray3.00I1-162[»]
3CCSX-ray2.95I1-162[»]
3CCUX-ray2.80I1-162[»]
3CCVX-ray2.90I1-162[»]
3CD6X-ray2.75I1-162[»]
3CMAX-ray2.80I1-162[»]
3CMEX-ray2.95I1-162[»]
3G4SX-ray3.20I67-136[»]
3G6EX-ray2.70I67-136[»]
3G71X-ray2.85I67-136[»]
3I55X-ray3.11I1-162[»]
3I56X-ray2.90I1-162[»]
4HUBX-ray2.40I1-162[»]
ProteinModelPortaliP14122.
SMRiP14122. Positions 5-136.

Miscellaneous databases

EvolutionaryTraceiP14122.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0080.
HOGENOMiHOG000082124.
KOiK02867.
OMAiLKIARMK.

Family and domain databases

Gene3Di1.10.10.250. 1 hit.
3.30.1550.10. 1 hit.
HAMAPiMF_00736. Ribosomal_L11.
InterProiIPR000911. Ribosomal_L11/L12.
IPR020783. Ribosomal_L11_C.
IPR020785. Ribosomal_L11_CS.
IPR020784. Ribosomal_L11_N.
[Graphical view]
PANTHERiPTHR11661. PTHR11661. 1 hit.
PfamiPF00298. Ribosomal_L11. 1 hit.
PF03946. Ribosomal_L11_N. 1 hit.
[Graphical view]
SMARTiSM00649. RL11. 1 hit.
[Graphical view]
SUPFAMiSSF46906. SSF46906. 1 hit.
SSF54747. SSF54747. 1 hit.
PROSITEiPS00359. RIBOSOMAL_L11. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P14122-1 [UniParc]FASTAAdd to Basket

« Hide

MAGTIEVLVP GGEANPGPPL GPELGPTPVD VQAVVQEIND QTAAFDGTEV    50
PVTVKYDDDG SFEIEVGVPP TAELIKDEAG FETGSGEPQE DFVADLSVDQ 100
VKQIAEQKHP DLLSYDLTNA AKEVVGTCTS LGVTIEGENP REFKERIDAG 150
EYDDVFAAEA QA 162
Length:162
Mass (Da):17,089
Last modified:January 23, 2007 - v3
Checksum:iE64E6802B49208B8
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X51430 Genomic DNA. Translation: CAA35793.1.
AY596297 Genomic DNA. Translation: AAV46342.1.
PIRiS08420. R5HS11.
RefSeqiWP_011223608.1. NC_006396.1.
YP_136048.1. NC_006396.1.

Genome annotation databases

EnsemblBacteriaiAAV46342; AAV46342; rrnAC1414.
GeneIDi3128412.
KEGGihma:rrnAC1414.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X51430 Genomic DNA. Translation: CAA35793.1 .
AY596297 Genomic DNA. Translation: AAV46342.1 .
PIRi S08420. R5HS11.
RefSeqi WP_011223608.1. NC_006396.1.
YP_136048.1. NC_006396.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1C04 X-ray 5.00 C 79-88 [» ]
1S72 X-ray 2.40 I 1-162 [» ]
1VQ4 X-ray 2.70 I 1-162 [» ]
1VQ5 X-ray 2.60 I 1-162 [» ]
1VQ6 X-ray 2.70 I 1-162 [» ]
1VQ7 X-ray 2.50 I 1-162 [» ]
1VQ8 X-ray 2.20 I 1-162 [» ]
1VQ9 X-ray 2.40 I 1-162 [» ]
1VQK X-ray 2.30 I 1-162 [» ]
1VQL X-ray 2.30 I 1-162 [» ]
1VQM X-ray 2.30 I 1-162 [» ]
1VQN X-ray 2.40 I 1-162 [» ]
1VQO X-ray 2.20 I 1-162 [» ]
1VQP X-ray 2.25 I 1-162 [» ]
1YHQ X-ray 2.40 I 1-162 [» ]
1YI2 X-ray 2.65 I 1-162 [» ]
1YIJ X-ray 2.60 I 1-162 [» ]
1YIT X-ray 2.80 I 1-162 [» ]
1YJ9 X-ray 2.90 I 1-162 [» ]
1YJN X-ray 3.00 I 1-162 [» ]
1YJW X-ray 2.90 I 1-162 [» ]
2OTJ X-ray 2.90 I 2-162 [» ]
2OTL X-ray 2.70 I 1-162 [» ]
2QA4 X-ray 3.00 I 1-162 [» ]
2QEX X-ray 2.90 I 1-162 [» ]
3CC2 X-ray 2.40 I 1-162 [» ]
3CC4 X-ray 2.70 I 1-162 [» ]
3CC7 X-ray 2.70 I 1-162 [» ]
3CCE X-ray 2.75 I 1-162 [» ]
3CCJ X-ray 2.70 I 1-162 [» ]
3CCL X-ray 2.90 I 1-162 [» ]
3CCM X-ray 2.55 I 1-162 [» ]
3CCQ X-ray 2.90 I 1-162 [» ]
3CCR X-ray 3.00 I 1-162 [» ]
3CCS X-ray 2.95 I 1-162 [» ]
3CCU X-ray 2.80 I 1-162 [» ]
3CCV X-ray 2.90 I 1-162 [» ]
3CD6 X-ray 2.75 I 1-162 [» ]
3CMA X-ray 2.80 I 1-162 [» ]
3CME X-ray 2.95 I 1-162 [» ]
3G4S X-ray 3.20 I 67-136 [» ]
3G6E X-ray 2.70 I 67-136 [» ]
3G71 X-ray 2.85 I 67-136 [» ]
3I55 X-ray 3.11 I 1-162 [» ]
3I56 X-ray 2.90 I 1-162 [» ]
4HUB X-ray 2.40 I 1-162 [» ]
ProteinModelPortali P14122.
SMRi P14122. Positions 5-136.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 272569.rrnAC1414.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAV46342 ; AAV46342 ; rrnAC1414 .
GeneIDi 3128412.
KEGGi hma:rrnAC1414.

Phylogenomic databases

eggNOGi COG0080.
HOGENOMi HOG000082124.
KOi K02867.
OMAi LKIARMK.

Enzyme and pathway databases

BioCyci HMAR272569:GJDH-1277-MONOMER.

Miscellaneous databases

EvolutionaryTracei P14122.

Family and domain databases

Gene3Di 1.10.10.250. 1 hit.
3.30.1550.10. 1 hit.
HAMAPi MF_00736. Ribosomal_L11.
InterProi IPR000911. Ribosomal_L11/L12.
IPR020783. Ribosomal_L11_C.
IPR020785. Ribosomal_L11_CS.
IPR020784. Ribosomal_L11_N.
[Graphical view ]
PANTHERi PTHR11661. PTHR11661. 1 hit.
Pfami PF00298. Ribosomal_L11. 1 hit.
PF03946. Ribosomal_L11_N. 1 hit.
[Graphical view ]
SMARTi SM00649. RL11. 1 hit.
[Graphical view ]
SUPFAMi SSF46906. SSF46906. 1 hit.
SSF54747. SSF54747. 1 hit.
PROSITEi PS00359. RIBOSOMAL_L11. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Nucleotide sequence of the genes encoding the L11, L1, L10 and L12 equivalent ribosomal proteins from the archaebacterium Halobacterium marismortui."
    Arndt E., Weigel C.
    Nucleic Acids Res. 18:1285-1285(1990) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809.
  3. "Extended N-terminal sequencing of proteins of archaebacterial ribosomes blotted from two-dimensional gels onto glass fiber and poly(vinylidene difluoride) membrane."
    Walsh M.J., McDougall J., Wittmann-Liebold B.
    Biochemistry 27:6867-6876(1988) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 2-28.
  4. "Placement of protein and RNA structures into a 5 A-resolution map of the 50S ribosomal subunit."
    Ban N., Nissen P., Hansen J., Capel M., Moore P.B., Steitz T.A.
    Nature 400:841-847(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: 3D-STRUCTURE MODELING.
  5. "Structure of the base of the L7/L12 stalk of the Haloarcula marismortui large ribosomal subunit: analysis of L11 movements."
    Kavran J.M., Steitz T.A.
    J. Mol. Biol. 371:1047-1059(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.0 ANGSTROMS), RRNA-BINDING, INTERACTION WITH L10.
  6. "Revisiting the Haloarcula marismortui 50S ribosomal subunit model."
    Gabdulkhakov A., Nikonov S., Garber M.
    Acta Crystallogr. D 69:997-1004(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.4 ANGSTROMS) OF THE 50S SUBUNIT.

Entry informationi

Entry nameiRL11_HALMA
AccessioniPrimary (citable) accession number: P14122
Secondary accession number(s): Q5V2B0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 1, 1990
Last sequence update: January 23, 2007
Last modified: September 3, 2014
This is version 111 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi