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Protein

50S ribosomal protein L30P

Gene

rpl30p

Organism
Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

This is one of 5 proteins that mediate the attachment of the 5S rRNA onto the large ribosomal subunit, stabilizing the orientation of adjacent RNA domains.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L30PUniRule annotation
Alternative name(s):
Hl16
Hl20
Hmal30
Gene namesi
Name:rpl30pUniRule annotation
Ordered Locus Names:rrnAC1591
OrganismiHaloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui)
Taxonomic identifieri272569 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaHalobacteriaHalobacterialesHalobacteriaceaeHaloarcula
Proteomesi
  • UP000001169 Componenti: Chromosome I

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001046221 – 15450S ribosomal protein L30PAdd BLAST154

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Binds 5S rRNA.UniRule annotation2 Publications

Protein-protein interaction databases

STRINGi272569.rrnAC1591.

Structurei

Secondary structure

1154
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi2 – 6Combined sources5
Helixi15 – 23Combined sources9
Beta strandi31 – 35Combined sources5
Helixi39 – 47Combined sources9
Helixi49 – 51Combined sources3
Beta strandi52 – 55Combined sources4
Helixi59 – 69Combined sources11
Beta strandi72 – 75Combined sources4
Helixi81 – 87Combined sources7
Beta strandi88 – 92Combined sources5
Helixi93 – 101Combined sources9
Helixi108 – 110Combined sources3
Beta strandi114 – 117Combined sources4
Beta strandi128 – 131Combined sources4
Helixi132 – 134Combined sources3
Beta strandi137 – 140Combined sources4
Helixi143 – 152Combined sources10

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1FFKX-ray2.40T1-154[»]
1JJ2X-ray2.40V1-154[»]
1K73X-ray3.01X1-154[»]
1K8AX-ray3.00X1-154[»]
1K9MX-ray3.00X1-154[»]
1KC8X-ray3.01X1-154[»]
1KD1X-ray3.00X1-154[»]
1KQSX-ray3.10V1-154[»]
1M1KX-ray3.20X1-154[»]
1M90X-ray2.80X1-154[»]
1N8RX-ray3.00X1-154[»]
1NJIX-ray3.00X1-154[»]
1Q7YX-ray3.20X1-154[»]
1Q81X-ray2.95X1-154[»]
1Q82X-ray2.98X1-154[»]
1Q86X-ray3.00X1-154[»]
1QVFX-ray3.10V1-154[»]
1QVGX-ray2.90V1-154[»]
1S72X-ray2.40W1-154[»]
1VQ4X-ray2.70W1-154[»]
1VQ5X-ray2.60W1-154[»]
1VQ6X-ray2.70W1-154[»]
1VQ7X-ray2.50W1-154[»]
1VQ8X-ray2.20W1-154[»]
1VQ9X-ray2.40W1-154[»]
1VQKX-ray2.30W1-154[»]
1VQLX-ray2.30W1-154[»]
1VQMX-ray2.30W1-154[»]
1VQNX-ray2.40W1-154[»]
1VQOX-ray2.20W1-154[»]
1VQPX-ray2.25W1-154[»]
1W2BX-ray3.50V1-154[»]
1YHQX-ray2.40W1-154[»]
1YI2X-ray2.65W1-154[»]
1YIJX-ray2.60W1-154[»]
1YITX-ray2.80W1-154[»]
1YJ9X-ray2.90W1-154[»]
1YJNX-ray3.00W1-154[»]
1YJWX-ray2.90W1-154[»]
2OTJX-ray2.90W1-154[»]
2OTLX-ray2.70W1-154[»]
2QA4X-ray3.00W1-154[»]
2QEXX-ray2.90W1-154[»]
3CC2X-ray2.40W1-154[»]
3CC4X-ray2.70W1-154[»]
3CC7X-ray2.70W1-154[»]
3CCEX-ray2.75W1-154[»]
3CCJX-ray2.70W1-154[»]
3CCLX-ray2.90W1-154[»]
3CCMX-ray2.55W1-154[»]
3CCQX-ray2.90W1-154[»]
3CCRX-ray3.00W1-154[»]
3CCSX-ray2.95W1-154[»]
3CCUX-ray2.80W1-154[»]
3CCVX-ray2.90W1-154[»]
3CD6X-ray2.75W1-154[»]
3CMAX-ray2.80W1-154[»]
3CMEX-ray2.95W1-154[»]
3CPWX-ray2.70V1-154[»]
3CXCX-ray3.00V1-154[»]
3G4SX-ray3.20W1-154[»]
3G6EX-ray2.70W1-154[»]
3G71X-ray2.85W1-154[»]
3I55X-ray3.11W1-154[»]
3I56X-ray2.90W1-154[»]
3OW2X-ray2.70V1-154[»]
4ADXelectron microscopy6.60W1-154[»]
4V9FX-ray2.40W1-154[»]
ProteinModelPortaliP14121.
SMRiP14121.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP14121.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L30P family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG04086. Archaea.
COG1841. LUCA.
HOGENOMiHOG000170918.
KOiK02907.
OMAiHPPRKGH.

Family and domain databases

Gene3Di1.10.15.30. 1 hit.
3.30.1390.20. 2 hits.
HAMAPiMF_01371_A. Ribosomal_L30_A. 1 hit.
InterProiIPR005997. Ribosomal_L30_arc.
IPR023106. Ribosomal_L30_central_dom_arc.
IPR018038. Ribosomal_L30_CS.
IPR016082. Ribosomal_L30_ferredoxin-like.
[Graphical view]
PfamiPF00327. Ribosomal_L30. 1 hit.
[Graphical view]
SUPFAMiSSF55129. SSF55129. 1 hit.
TIGRFAMsiTIGR01309. uL30_arch. 1 hit.
PROSITEiPS00634. RIBOSOMAL_L30. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P14121-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MHALVQLRGE VNMHTDIQDT LEMLNIHHVN HCTLVPETDA YRGMVAKVND
60 70 80 90 100
FVAFGEPSQE TLETVLATRA EPLEGDADVD DEWVAEHTDY DDISGLAFAL
110 120 130 140 150
LSEETTLREQ GLSPTLRLHP PRGGHDGVKH PVKEGGQLGK HDTEGIDDLL

EAMR
Length:154
Mass (Da):17,042
Last modified:August 1, 1992 - v2
Checksum:iED673F036E974C14
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti83W → L AA sequence (PubMed:2591382).Curated1
Sequence conflicti148Missing AA sequence (PubMed:2591382).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X58395 Genomic DNA. Translation: CAA41292.1.
AY596297 Genomic DNA. Translation: AAV46509.1.
PIRiS16543. R5HS30.
RefSeqiWP_004957369.1. NC_006396.1.

Genome annotation databases

EnsemblBacteriaiAAV46509; AAV46509; rrnAC1591.
GeneIDi3127531.
KEGGihma:rrnAC1591.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X58395 Genomic DNA. Translation: CAA41292.1.
AY596297 Genomic DNA. Translation: AAV46509.1.
PIRiS16543. R5HS30.
RefSeqiWP_004957369.1. NC_006396.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1FFKX-ray2.40T1-154[»]
1JJ2X-ray2.40V1-154[»]
1K73X-ray3.01X1-154[»]
1K8AX-ray3.00X1-154[»]
1K9MX-ray3.00X1-154[»]
1KC8X-ray3.01X1-154[»]
1KD1X-ray3.00X1-154[»]
1KQSX-ray3.10V1-154[»]
1M1KX-ray3.20X1-154[»]
1M90X-ray2.80X1-154[»]
1N8RX-ray3.00X1-154[»]
1NJIX-ray3.00X1-154[»]
1Q7YX-ray3.20X1-154[»]
1Q81X-ray2.95X1-154[»]
1Q82X-ray2.98X1-154[»]
1Q86X-ray3.00X1-154[»]
1QVFX-ray3.10V1-154[»]
1QVGX-ray2.90V1-154[»]
1S72X-ray2.40W1-154[»]
1VQ4X-ray2.70W1-154[»]
1VQ5X-ray2.60W1-154[»]
1VQ6X-ray2.70W1-154[»]
1VQ7X-ray2.50W1-154[»]
1VQ8X-ray2.20W1-154[»]
1VQ9X-ray2.40W1-154[»]
1VQKX-ray2.30W1-154[»]
1VQLX-ray2.30W1-154[»]
1VQMX-ray2.30W1-154[»]
1VQNX-ray2.40W1-154[»]
1VQOX-ray2.20W1-154[»]
1VQPX-ray2.25W1-154[»]
1W2BX-ray3.50V1-154[»]
1YHQX-ray2.40W1-154[»]
1YI2X-ray2.65W1-154[»]
1YIJX-ray2.60W1-154[»]
1YITX-ray2.80W1-154[»]
1YJ9X-ray2.90W1-154[»]
1YJNX-ray3.00W1-154[»]
1YJWX-ray2.90W1-154[»]
2OTJX-ray2.90W1-154[»]
2OTLX-ray2.70W1-154[»]
2QA4X-ray3.00W1-154[»]
2QEXX-ray2.90W1-154[»]
3CC2X-ray2.40W1-154[»]
3CC4X-ray2.70W1-154[»]
3CC7X-ray2.70W1-154[»]
3CCEX-ray2.75W1-154[»]
3CCJX-ray2.70W1-154[»]
3CCLX-ray2.90W1-154[»]
3CCMX-ray2.55W1-154[»]
3CCQX-ray2.90W1-154[»]
3CCRX-ray3.00W1-154[»]
3CCSX-ray2.95W1-154[»]
3CCUX-ray2.80W1-154[»]
3CCVX-ray2.90W1-154[»]
3CD6X-ray2.75W1-154[»]
3CMAX-ray2.80W1-154[»]
3CMEX-ray2.95W1-154[»]
3CPWX-ray2.70V1-154[»]
3CXCX-ray3.00V1-154[»]
3G4SX-ray3.20W1-154[»]
3G6EX-ray2.70W1-154[»]
3G71X-ray2.85W1-154[»]
3I55X-ray3.11W1-154[»]
3I56X-ray2.90W1-154[»]
3OW2X-ray2.70V1-154[»]
4ADXelectron microscopy6.60W1-154[»]
4V9FX-ray2.40W1-154[»]
ProteinModelPortaliP14121.
SMRiP14121.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272569.rrnAC1591.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAV46509; AAV46509; rrnAC1591.
GeneIDi3127531.
KEGGihma:rrnAC1591.

Phylogenomic databases

eggNOGiarCOG04086. Archaea.
COG1841. LUCA.
HOGENOMiHOG000170918.
KOiK02907.
OMAiHPPRKGH.

Miscellaneous databases

EvolutionaryTraceiP14121.

Family and domain databases

Gene3Di1.10.15.30. 1 hit.
3.30.1390.20. 2 hits.
HAMAPiMF_01371_A. Ribosomal_L30_A. 1 hit.
InterProiIPR005997. Ribosomal_L30_arc.
IPR023106. Ribosomal_L30_central_dom_arc.
IPR018038. Ribosomal_L30_CS.
IPR016082. Ribosomal_L30_ferredoxin-like.
[Graphical view]
PfamiPF00327. Ribosomal_L30. 1 hit.
[Graphical view]
SUPFAMiSSF55129. SSF55129. 1 hit.
TIGRFAMsiTIGR01309. uL30_arch. 1 hit.
PROSITEiPS00634. RIBOSOMAL_L30. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL30_HALMA
AccessioniPrimary (citable) accession number: P14121
Secondary accession number(s): Q5V1U3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 1, 1990
Last sequence update: August 1, 1992
Last modified: November 2, 2016
This is version 126 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.