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Protein

50S ribosomal protein L24e

Gene

rpl24e

Organism
Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Binds to the 23S rRNA.

Cofactori

Zn2+CuratedNote: Binds 1 zinc ion per subunit.Curated

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi7ZincCurated1
Metal bindingi10ZincCurated1
Metal bindingi33ZincCurated1
Metal bindingi37ZincCurated1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri7 – 37C4-typeCuratedAdd BLAST31

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

Metal-binding, RNA-binding, rRNA-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L24e
Alternative name(s):
Hl21/Hl22
Gene namesi
Name:rpl24e
Ordered Locus Names:rrnAC0104
OrganismiHaloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui)
Taxonomic identifieri272569 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaHalobacteriaHalobacterialesHalobacteriaceaeHaloarcula
Proteomesi
  • UP000001169 Componenti: Chromosome I

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved1 Publication
ChainiPRO_00001369132 – 6750S ribosomal protein L24eAdd BLAST66

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Forms a cluster with proteins L3 and L14.2 Publications

Protein-protein interaction databases

STRINGi272569.rrnAC0104.

Structurei

Secondary structure

167
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Turni8 – 10Combined sources3
Beta strandi20 – 23Combined sources4
Beta strandi25 – 27Combined sources3
Beta strandi29 – 33Combined sources5
Helixi35 – 42Combined sources8
Helixi47 – 49Combined sources3
Beta strandi50 – 53Combined sources4
Turni54 – 56Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1FFKX-ray2.40R2-67[»]
1JJ2X-ray2.40T2-67[»]
1K73X-ray3.01V2-67[»]
1K8AX-ray3.00V2-67[»]
1K9MX-ray3.00V2-67[»]
1KC8X-ray3.01V2-67[»]
1KD1X-ray3.00V2-67[»]
1KQSX-ray3.10T2-67[»]
1M1KX-ray3.20V2-67[»]
1M90X-ray2.80V2-67[»]
1ML5electron microscopy14.00r2-67[»]
1N8RX-ray3.00V2-67[»]
1NJIX-ray3.00V2-67[»]
1Q7YX-ray3.20V2-67[»]
1Q81X-ray2.95V2-67[»]
1Q82X-ray2.98V2-67[»]
1Q86X-ray3.00V2-67[»]
1QVFX-ray3.10T2-67[»]
1QVGX-ray2.90T2-67[»]
1S72X-ray2.40U2-67[»]
1VQ4X-ray2.70U2-67[»]
1VQ5X-ray2.60U2-67[»]
1VQ6X-ray2.70U2-67[»]
1VQ7X-ray2.50U2-67[»]
1VQ8X-ray2.20U2-67[»]
1VQ9X-ray2.40U2-67[»]
1VQKX-ray2.30U2-67[»]
1VQLX-ray2.30U2-67[»]
1VQMX-ray2.30U2-67[»]
1VQNX-ray2.40U2-67[»]
1VQOX-ray2.20U2-67[»]
1VQPX-ray2.25U2-67[»]
1W2BX-ray3.50T2-67[»]
1YHQX-ray2.40U2-67[»]
1YI2X-ray2.65U2-67[»]
1YIJX-ray2.60U2-67[»]
1YITX-ray2.80U2-67[»]
1YJ9X-ray2.80U2-67[»]
1YJNX-ray3.00U2-67[»]
1YJWX-ray2.90U2-67[»]
2OTJX-ray2.90U2-67[»]
2OTLX-ray2.70U2-67[»]
2QA4X-ray3.00U1-67[»]
2QEXX-ray2.90U1-67[»]
3CC2X-ray2.40U1-67[»]
3CC4X-ray2.70U1-67[»]
3CC7X-ray2.70U1-67[»]
3CCEX-ray2.75U1-67[»]
3CCJX-ray2.70U1-67[»]
3CCLX-ray2.90U1-67[»]
3CCMX-ray2.55U1-67[»]
3CCQX-ray2.90U1-67[»]
3CCRX-ray3.00U1-67[»]
3CCSX-ray2.95U1-67[»]
3CCUX-ray2.80U1-67[»]
3CCVX-ray2.90U1-67[»]
3CD6X-ray2.75U1-67[»]
3CMAX-ray2.80U1-67[»]
3CMEX-ray2.95U1-67[»]
3CPWX-ray2.70T1-67[»]
3CXCX-ray3.00T2-67[»]
3G4SX-ray3.20U5-57[»]
3G6EX-ray2.70U5-57[»]
3G71X-ray2.85U5-57[»]
3I55X-ray3.11U2-67[»]
3I56X-ray2.90U2-67[»]
3OW2X-ray2.70T5-57[»]
4ADXelectron microscopy6.60U1-67[»]
4V42X-ray5.50BR2-67[»]
4V4RX-ray5.90T2-67[»]
4V4SX-ray6.76T2-67[»]
4V4TX-ray6.46T2-67[»]
4V9FX-ray2.40U1-67[»]
ProteinModelPortaliP14116.
SMRiP14116.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP14116.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L24e family.Curated

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri7 – 37C4-typeCuratedAdd BLAST31

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiarCOG01950. Archaea.
COG2075. LUCA.
HOGENOMiHOG000156057.
KOiK02896.

Family and domain databases

CDDicd00472. Ribosomal_L24e_L24. 1 hit.
Gene3Di2.30.170.20. 1 hit.
HAMAPiMF_00773. Ribosomal_L24e. 1 hit.
InterProiIPR023438. Ribosomal_L24e.
IPR000988. Ribosomal_L24e-rel.
IPR023442. Ribosomal_L24e_CS.
IPR011017. TRASH_dom.
[Graphical view]
PANTHERiPTHR10792. PTHR10792. 1 hit.
PfamiPF01246. Ribosomal_L24e. 1 hit.
[Graphical view]
SMARTiSM00746. TRASH. 1 hit.
[Graphical view]
PROSITEiPS01073. RIBOSOMAL_L24E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P14116-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPRTRECDYC GTDIEPGTGT MFVHKDGATT HFCSSKCENN ADLGREARNL
60
EWTDTARGEA GEAEDEA
Length:67
Mass (Da):7,356
Last modified:January 23, 2007 - v2
Checksum:iD4FCAE00935B7305
GO

Sequence cautioni

The sequence AAV45180 differs from that shown. Reason: Frameshift at position 67.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY596297 Genomic DNA. Translation: AAV45180.1. Frameshift.
PIRiS06846. R6HS21.
RefSeqiWP_011222823.1. NC_006396.1.

Genome annotation databases

EnsemblBacteriaiAAV45180; AAV45180; rrnAC0104.
GeneIDi3130240.
KEGGihma:rrnAC0104.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY596297 Genomic DNA. Translation: AAV45180.1. Frameshift.
PIRiS06846. R6HS21.
RefSeqiWP_011222823.1. NC_006396.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1FFKX-ray2.40R2-67[»]
1JJ2X-ray2.40T2-67[»]
1K73X-ray3.01V2-67[»]
1K8AX-ray3.00V2-67[»]
1K9MX-ray3.00V2-67[»]
1KC8X-ray3.01V2-67[»]
1KD1X-ray3.00V2-67[»]
1KQSX-ray3.10T2-67[»]
1M1KX-ray3.20V2-67[»]
1M90X-ray2.80V2-67[»]
1ML5electron microscopy14.00r2-67[»]
1N8RX-ray3.00V2-67[»]
1NJIX-ray3.00V2-67[»]
1Q7YX-ray3.20V2-67[»]
1Q81X-ray2.95V2-67[»]
1Q82X-ray2.98V2-67[»]
1Q86X-ray3.00V2-67[»]
1QVFX-ray3.10T2-67[»]
1QVGX-ray2.90T2-67[»]
1S72X-ray2.40U2-67[»]
1VQ4X-ray2.70U2-67[»]
1VQ5X-ray2.60U2-67[»]
1VQ6X-ray2.70U2-67[»]
1VQ7X-ray2.50U2-67[»]
1VQ8X-ray2.20U2-67[»]
1VQ9X-ray2.40U2-67[»]
1VQKX-ray2.30U2-67[»]
1VQLX-ray2.30U2-67[»]
1VQMX-ray2.30U2-67[»]
1VQNX-ray2.40U2-67[»]
1VQOX-ray2.20U2-67[»]
1VQPX-ray2.25U2-67[»]
1W2BX-ray3.50T2-67[»]
1YHQX-ray2.40U2-67[»]
1YI2X-ray2.65U2-67[»]
1YIJX-ray2.60U2-67[»]
1YITX-ray2.80U2-67[»]
1YJ9X-ray2.80U2-67[»]
1YJNX-ray3.00U2-67[»]
1YJWX-ray2.90U2-67[»]
2OTJX-ray2.90U2-67[»]
2OTLX-ray2.70U2-67[»]
2QA4X-ray3.00U1-67[»]
2QEXX-ray2.90U1-67[»]
3CC2X-ray2.40U1-67[»]
3CC4X-ray2.70U1-67[»]
3CC7X-ray2.70U1-67[»]
3CCEX-ray2.75U1-67[»]
3CCJX-ray2.70U1-67[»]
3CCLX-ray2.90U1-67[»]
3CCMX-ray2.55U1-67[»]
3CCQX-ray2.90U1-67[»]
3CCRX-ray3.00U1-67[»]
3CCSX-ray2.95U1-67[»]
3CCUX-ray2.80U1-67[»]
3CCVX-ray2.90U1-67[»]
3CD6X-ray2.75U1-67[»]
3CMAX-ray2.80U1-67[»]
3CMEX-ray2.95U1-67[»]
3CPWX-ray2.70T1-67[»]
3CXCX-ray3.00T2-67[»]
3G4SX-ray3.20U5-57[»]
3G6EX-ray2.70U5-57[»]
3G71X-ray2.85U5-57[»]
3I55X-ray3.11U2-67[»]
3I56X-ray2.90U2-67[»]
3OW2X-ray2.70T5-57[»]
4ADXelectron microscopy6.60U1-67[»]
4V42X-ray5.50BR2-67[»]
4V4RX-ray5.90T2-67[»]
4V4SX-ray6.76T2-67[»]
4V4TX-ray6.46T2-67[»]
4V9FX-ray2.40U1-67[»]
ProteinModelPortaliP14116.
SMRiP14116.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272569.rrnAC0104.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAV45180; AAV45180; rrnAC0104.
GeneIDi3130240.
KEGGihma:rrnAC0104.

Phylogenomic databases

eggNOGiarCOG01950. Archaea.
COG2075. LUCA.
HOGENOMiHOG000156057.
KOiK02896.

Miscellaneous databases

EvolutionaryTraceiP14116.

Family and domain databases

CDDicd00472. Ribosomal_L24e_L24. 1 hit.
Gene3Di2.30.170.20. 1 hit.
HAMAPiMF_00773. Ribosomal_L24e. 1 hit.
InterProiIPR023438. Ribosomal_L24e.
IPR000988. Ribosomal_L24e-rel.
IPR023442. Ribosomal_L24e_CS.
IPR011017. TRASH_dom.
[Graphical view]
PANTHERiPTHR10792. PTHR10792. 1 hit.
PfamiPF01246. Ribosomal_L24e. 1 hit.
[Graphical view]
SMARTiSM00746. TRASH. 1 hit.
[Graphical view]
PROSITEiPS01073. RIBOSOMAL_L24E. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL24E_HALMA
AccessioniPrimary (citable) accession number: P14116
Secondary accession number(s): Q5V5M2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 1, 1990
Last sequence update: January 23, 2007
Last modified: November 2, 2016
This is version 130 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.