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Protein

Outer membrane porin F

Gene

oprF

Organism
Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Has porin activity, forming small water-filled channels. Also has a structural role in determining cell shape and ability to grow in low-osmolarity medium.

GO - Molecular functioni

  • calcium ion binding Source: InterPro
  • porin activity Source: PseudoCAP

GO - Biological processi

  • adhesion of symbiont to host Source: PseudoCAP
  • ion transport Source: UniProtKB-KW
  • regulation of cell shape Source: UniProtKB-KW
  • transmembrane transport Source: GOC
Complete GO annotation...

Keywords - Molecular functioni

Porin

Keywords - Biological processi

Cell shape, Ion transport, Transport

Protein family/group databases

TCDBi1.B.6.1.2. the ompa-ompf porin (oop) family.

Names & Taxonomyi

Protein namesi
Recommended name:
Outer membrane porin F
Gene namesi
Name:oprF
Ordered Locus Names:PA1777
OrganismiPseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
Taxonomic identifieri208964 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
Proteomesi
  • UP000002438 Componenti: Chromosome

Organism-specific databases

PseudoCAPiPA1777.

Subcellular locationi

GO - Cellular componenti

  • cell outer membrane Source: UniProtKB-SubCell
  • outer membrane Source: PseudoCAP
  • pore complex Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Cell outer membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2424Add
BLAST
Chaini25 – 350326Outer membrane porin FPRO_0000020115Add
BLAST

Post-translational modificationi

Contains two disulfide bonds.

Keywords - PTMi

Disulfide bond

Proteomic databases

PaxDbiP13794.
PRIDEiP13794.

Interactioni

Protein-protein interaction databases

STRINGi208964.PA1777.

Structurei

Secondary structure

1
350
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi30 – 3910Combined sources
Beta strandi51 – 7525Combined sources
Beta strandi89 – 10012Combined sources
Beta strandi104 – 12421Combined sources
Beta strandi129 – 16234Combined sources
Beta strandi173 – 18412Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4RLCX-ray1.60A25-184[»]
ProteinModelPortaliP13794.
SMRiP13794. Positions 25-184, 200-340.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati190 – 19121
Repeati192 – 19322
Repeati194 – 19523
Domaini231 – 349119OmpA-likePROSITE-ProRule annotationAdd
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni190 – 19563 X 2 AA tandem repeats of X-P

Sequence similaritiesi

Belongs to the OmpA family.Curated
Contains 1 OmpA-like domain.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, Signal, Transmembrane, Transmembrane beta strand

Phylogenomic databases

eggNOGiENOG4105CDV. Bacteria.
COG2885. LUCA.
HOGENOMiHOG000295618.
InParanoidiP13794.
KOiK03286.
OMAiADFMQQY.
OrthoDBiEOG6PP9QB.
PhylomeDBiP13794.

Family and domain databases

Gene3Di2.40.160.20. 1 hit.
3.30.1330.60. 1 hit.
4.10.1080.10. 1 hit.
InterProiIPR011250. OMP/PagP_b-brl.
IPR006664. OMP_bac.
IPR006665. OmpA-like.
IPR006690. OMPA-like_CS.
IPR008722. OprF_membrane_N.
IPR028974. TSP_type-3_rpt.
[Graphical view]
PfamiPF00691. OmpA. 1 hit.
PF05736. OprF. 1 hit.
[Graphical view]
PRINTSiPR01021. OMPADOMAIN.
SUPFAMiSSF103088. SSF103088. 1 hit.
SSF103647. SSF103647. 1 hit.
SSF56925. SSF56925. 1 hit.
PROSITEiPS01068. OMPA_1. 1 hit.
PS51123. OMPA_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P13794-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKLKNTLGVV IGSLVAASAM NAFAQGQNSV EIEAFGKRYF TDSVRNMKNA
60 70 80 90 100
DLYGGSIGYF LTDDVELALS YGEYHDVRGT YETGNKKVHG NLTSLDAIYH
110 120 130 140 150
FGTPGVGLRP YVSAGLAHQN ITNINSDSQG RQQMTMANIG AGLKYYFTEN
160 170 180 190 200
FFAKASLDGQ YGLEKRDNGH QGEWMAGLGV GFNFGGSKAA PAPEPVADVC
210 220 230 240 250
SDSDNDGVCD NVDKCPDTPA NVTVDANGCP AVAEVVRVQL DVKFDFDKSK
260 270 280 290 300
VKENSYADIK NLADFMKQYP STSTTVEGHT DSVGTDAYNQ KLSERRANAV
310 320 330 340 350
RDVLVNEYGV EGGRVNAVGY GESRPVADNA TAEGRAINRR VEAEVEAEAK
Length:350
Mass (Da):37,640
Last modified:January 1, 1990 - v1
Checksum:iD1F758F076874383
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF027290 Genomic DNA. Translation: AAD11568.1.
M18975 Genomic DNA. Translation: AAA25973.1.
AE004091 Genomic DNA. Translation: AAG05166.1.
PIRiS39156.
RefSeqiNP_250468.1. NC_002516.2.
WP_003087843.1. NZ_ASJY01000250.1.

Genome annotation databases

EnsemblBacteriaiAAG05166; AAG05166; PA1777.
GeneIDi878442.
KEGGipae:PA1777.
PATRICi19837913. VBIPseAer58763_1842.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF027290 Genomic DNA. Translation: AAD11568.1.
M18975 Genomic DNA. Translation: AAA25973.1.
AE004091 Genomic DNA. Translation: AAG05166.1.
PIRiS39156.
RefSeqiNP_250468.1. NC_002516.2.
WP_003087843.1. NZ_ASJY01000250.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4RLCX-ray1.60A25-184[»]
ProteinModelPortaliP13794.
SMRiP13794. Positions 25-184, 200-340.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi208964.PA1777.

Protein family/group databases

TCDBi1.B.6.1.2. the ompa-ompf porin (oop) family.

Proteomic databases

PaxDbiP13794.
PRIDEiP13794.

Protocols and materials databases

DNASUi878442.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAG05166; AAG05166; PA1777.
GeneIDi878442.
KEGGipae:PA1777.
PATRICi19837913. VBIPseAer58763_1842.

Organism-specific databases

PseudoCAPiPA1777.

Phylogenomic databases

eggNOGiENOG4105CDV. Bacteria.
COG2885. LUCA.
HOGENOMiHOG000295618.
InParanoidiP13794.
KOiK03286.
OMAiADFMQQY.
OrthoDBiEOG6PP9QB.
PhylomeDBiP13794.

Family and domain databases

Gene3Di2.40.160.20. 1 hit.
3.30.1330.60. 1 hit.
4.10.1080.10. 1 hit.
InterProiIPR011250. OMP/PagP_b-brl.
IPR006664. OMP_bac.
IPR006665. OmpA-like.
IPR006690. OMPA-like_CS.
IPR008722. OprF_membrane_N.
IPR028974. TSP_type-3_rpt.
[Graphical view]
PfamiPF00691. OmpA. 1 hit.
PF05736. OprF. 1 hit.
[Graphical view]
PRINTSiPR01021. OMPADOMAIN.
SUPFAMiSSF103088. SSF103088. 1 hit.
SSF103647. SSF103647. 1 hit.
SSF56925. SSF56925. 1 hit.
PROSITEiPS01068. OMPA_1. 1 hit.
PS51123. OMPA_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and transcriptional start site of the Pseudomonas aeruginosa outer membrane porin protein F gene."
    Duchene M., Schweizer A., Lottspeich F., Krauss G., Marget M., Vogel K., von Specht B.-U., Domdey H.
    J. Bacteriol. 170:155-162(1988) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228.
  3. "Biofouling in water treatment systems: effect of membrane properties on biofilm formation."
    Liddor M.
    Thesis (2005), Ben-Gurion University, Israel
    Cited for: PROTEIN SEQUENCE OF 145-154; 261-291; 302-335 AND 340-350.
    Strain: ATCC 33467 / type 1 smooth and ATCC 33468 / type 2 mucoid.

Entry informationi

Entry nameiPORF_PSEAE
AccessioniPrimary (citable) accession number: P13794
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 1, 1990
Last sequence update: January 1, 1990
Last modified: May 11, 2016
This is version 116 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.