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P13734 (AGAR_PSEAF) Reviewed, UniProtKB/Swiss-Prot

Last modified December 11, 2013. Version 58. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Beta-agarase

EC=3.2.1.81
Gene names
Name:agrA
OrganismPseudoalteromonas atlantica (Alteromonas atlantica)
Taxonomic identifier288 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesPseudoalteromonadaceaePseudoalteromonas

Protein attributes

Sequence length505 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Hydrolysis of (1->4)-beta-D-galactosidic linkages in agarose, giving the tetramer as the predominant product.

Subcellular location

Secreted.

Sequence similarities

Belongs to the glycosyl hydrolase 86 family.

Ontologies

Keywords
   Cellular componentSecreted
   DomainSignal
   Molecular functionGlycosidase
Hydrolase
Gene Ontology (GO)
   Biological_processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Cellular_componentextracellular region

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionbeta-agarase activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2323
Chain24 – 505482Beta-agarase
PRO_0000012252

Sites

Active site2001Proton donor Potential
Active site3221Nucleophile Potential

Sequences

Sequence LengthMass (Da)Tools
P13734 [UniParc].

Last modified January 1, 1990. Version 1.
Checksum: 66B75CBF486280B1

FASTA50557,617
        10         20         30         40         50         60 
MLKVIPWLLV TSSLVAIPTY IHATTEVVVN LNVKHSVEGK SEFERKNHIK LHSTLNDNDW 

        70         80         90        100        110        120 
QGEEDKLKYM MEELDVYFGR DNGGTVWNFN QAIEDPANIG YADPQNIIAR GQAQRETNWG 

       130        140        150        160        170        180 
QNKSALHQYD GRGDLMIGGQ PRAHYLGNTS PCCGGSAWQA KGGDAVGDFL GQYVNEFFRS 

       190        200        210        220        230        240 
AGDPVTKGHL APVYFEVLNE PLYQVTDAPH ELGLEQPIPP IDIFTFHNDV ADAFRQHNTH 

       250        260        270        280        290        300 
IKIGGFTVAF PIFEQREFAR WEERMKLFID TSGSHMDVYS THFYDLEDDN RFKGSRLEAT 

       310        320        330        340        350        360 
LDMIDQYSLL ALGETKPHVI SEYGGRNRPM ENAPWSALRD WWFLKTASPM LMQFLSRPDS 

       370        380        390        400        410        420 
VLTSIPFVPI KALWGTAADG TPYNWRLLRQ QKEAPNETGE NWVFTEMVKF YQLWSDVKGT 

       430        440        450        460        470        480 
RVDTFSTNSD FLIDSYVQND KAYVLISNLT EQAEKIVVHK YGAPASSQPT TRIKHLYLKG 

       490        500 
AAPRLMKQVM RQISKKSRLL LKRLW 

« Hide

References

[1]"Sequence analysis of the agrA gene encoding beta-agarase from Pseudomonas atlantica."
Belas R.
J. Bacteriol. 171:602-605(1989) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
M22725 Genomic DNA. Translation: AAA25696.1.
PIRA32261.

3D structure databases

ProteinModelPortalP13734.
ModBaseSearch...
MobiDBSearch...

Protein family/group databases

CAZyGH86. Glycoside Hydrolase Family 86.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

Gene3D3.20.20.80. 1 hit.
InterProIPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
SUPFAMSSF51445. SSF51445. 1 hit.
ProtoNetSearch...

Entry information

Entry nameAGAR_PSEAF
AccessionPrimary (citable) accession number: P13734
Entry history
Integrated into UniProtKB/Swiss-Prot: January 1, 1990
Last sequence update: January 1, 1990
Last modified: December 11, 2013
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Glycosyl hydrolases

Classification of glycosyl hydrolase families and list of entries