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P13689

- ABP1_MAIZE

UniProt

P13689 - ABP1_MAIZE

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Protein

Auxin-binding protein 1

Gene

ABP1

Organism
Zea mays (Maize)
Status
Reviewed - Annotation score: 5 out of 5- Experimental evidence at protein leveli

Functioni

This is probably a receptor for the plant hormone auxin.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi95 – 951Zinc
Binding sitei95 – 951Auxin1 Publication
Metal bindingi97 – 971Zinc
Metal bindingi101 – 1011Zinc
Binding sitei101 – 1011Auxin1 Publication
Metal bindingi144 – 1441Zinc

GO - Molecular functioni

  1. auxin binding Source: UniProtKB
  2. receptor activity Source: InterPro
  3. zinc ion binding Source: UniProtKB

GO - Biological processi

  1. auxin-activated signaling pathway Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Receptor

Keywords - Biological processi

Auxin signaling pathway

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Auxin-binding protein 1
Short name:
ABP
Alternative name(s):
ERABP1
Gene namesi
Name:ABP1
Synonyms:AUX311
OrganismiZea mays (Maize)
Taxonomic identifieri4577 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeZea

Organism-specific databases

GrameneiP13689.
MaizeGDBi25342.

Subcellular locationi

GO - Cellular componenti

  1. endoplasmic reticulum lumen Source: InterPro
Complete GO annotation...

Keywords - Cellular componenti

Endoplasmic reticulum

Pathology & Biotechi

Mutagenesis

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Mutagenesisi199 – 2002DE → EQ: Prevents ER retention. 1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 3838Add
BLAST
Chaini39 – 201163Auxin-binding protein 1PRO_0000020614Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi40 ↔ 1931 Publication
Glycosylationi133 – 1331N-linked (GlcNAc...)1 Publication

Keywords - PTMi

Disulfide bond, Glycoprotein

Proteomic databases

PRIDEiP13689.

Interactioni

Subunit structurei

Homodimer.1 Publication

Structurei

Secondary structure

1
201
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi46 – 494
Helixi50 – 523
Beta strandi63 – 697
Helixi71 – 744
Beta strandi77 – 8610
Beta strandi94 – 996
Beta strandi101 – 1077
Beta strandi110 – 1145
Beta strandi117 – 1215
Beta strandi126 – 1305
Beta strandi134 – 1385
Beta strandi144 – 1474
Beta strandi151 – 1533
Beta strandi155 – 16511
Beta strandi168 – 1736
Helixi178 – 1803
Beta strandi182 – 1865
Turni188 – 1903
Helixi191 – 1966

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1LR5X-ray1.90A/B/C/D39-201[»]
1LRHX-ray1.90A/B/C/D39-201[»]
ProteinModelPortaliP13689.
SMRiP13689. Positions 39-198.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP13689.

Family & Domainsi

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi198 – 2014Prevents secretion from ER

Keywords - Domaini

Signal

Family and domain databases

Gene3Di2.60.120.10. 1 hit.
InterProiIPR000526. Auxin-bd.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF02041. Auxin_BP. 1 hit.
[Graphical view]
PRINTSiPR00655. AUXINBINDNGP.
SUPFAMiSSF51182. SSF51182. 1 hit.
PROSITEiPS00014. ER_TARGET. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P13689-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAPDLSELAA AAAARGAYLA GVGVAVLLAA SFLPVAESSC VRDNSLVRDI
60 70 80 90 100
SQMPQSSYGI EGLSHITVAG ALNHGMKEVE VWLQTISPGQ RTPIHRHSCE
110 120 130 140 150
EVFTVLKGKG TLLMGSSSLK YPGQPQEIPF FQNTTFSIPV NDPHQVWNSD
160 170 180 190 200
EHEDLQVLVI ISRPPAKIFL YDDWSMPHTA AVLKFPFVWD EDCFEAAKDE

L
Length:201
Mass (Da):21,977
Last modified:January 1, 1990 - v1
Checksum:i1AF11DFEC247D9D0
GO

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti13 – 131A → G.1 Publication
Natural varianti141 – 1411N → S.

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X16309 mRNA. Translation: CAA34376.1.
J04550 mRNA. Translation: AAA33436.1.
X56737 Genomic DNA. Translation: CAA40061.1.
X16308 mRNA. Translation: CAA34375.1.
S53630 mRNA. Translation: AAB25115.1.
L08425 Genomic DNA. Translation: AAA33430.1.
PIRiS16262.
RefSeqiNP_001105312.1. NM_001111842.1.
UniGeneiZm.152.

Genome annotation databases

GeneIDi542232.
KEGGizma:542232.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X16309 mRNA. Translation: CAA34376.1 .
J04550 mRNA. Translation: AAA33436.1 .
X56737 Genomic DNA. Translation: CAA40061.1 .
X16308 mRNA. Translation: CAA34375.1 .
S53630 mRNA. Translation: AAB25115.1 .
L08425 Genomic DNA. Translation: AAA33430.1 .
PIRi S16262.
RefSeqi NP_001105312.1. NM_001111842.1.
UniGenei Zm.152.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1LR5 X-ray 1.90 A/B/C/D 39-201 [» ]
1LRH X-ray 1.90 A/B/C/D 39-201 [» ]
ProteinModelPortali P13689.
SMRi P13689. Positions 39-198.
ModBasei Search...
MobiDBi Search...

Proteomic databases

PRIDEi P13689.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 542232.
KEGGi zma:542232.

Organism-specific databases

Gramenei P13689.
MaizeGDBi 25342.

Miscellaneous databases

EvolutionaryTracei P13689.

Family and domain databases

Gene3Di 2.60.120.10. 1 hit.
InterProi IPR000526. Auxin-bd.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view ]
Pfami PF02041. Auxin_BP. 1 hit.
[Graphical view ]
PRINTSi PR00655. AUXINBINDNGP.
SUPFAMi SSF51182. SSF51182. 1 hit.
PROSITEi PS00014. ER_TARGET. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Molecular cloning and structural analysis of a gene from Zea mays (L.) coding for a putative receptor for the plant hormone auxin."
    Hesse T., Feldwisch J., Balshuesemann D., Bauw G., Puype M., Vandekerckhove J., Loebler M., Klaembt D., Schell J., Palme K.
    EMBO J. 8:2453-2461(1989) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Tissue: Coleoptile.
  2. "cDNA clones of the auxin-binding protein from corn coleoptiles (Zea mays L.): isolation and characterization by immunological methods."
    Tillmann U., Viola G., Kayser B., Siemeister G., Hesse T., Palme K., Loebler M., Klaembt D.
    EMBO J. 8:2463-2467(1989) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
  3. "Auxin-binding protein located in the endoplasmic reticulum of maize shoots: molecular cloning and complete primary structure."
    Inohara N., Shimomura S., Fukui T., Futai M.
    Proc. Natl. Acad. Sci. U.S.A. 86:3564-3568(1989) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
  4. "Structure and sequence of an auxin-binding protein gene from maize (Zea mays L.)."
    Yu L.X., Lazarus C.M.
    Plant Mol. Biol. 16:925-930(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: cv. LG11.
    Tissue: Shoot.
  5. "Auxin-binding protein -- antibodies and genes."
    Lazarus C.M., Napier R.M., Yu L.X., Lynas C., Venis M.A.
    Symp. Soc. Exp. Biol. 45:129-148(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE, VARIANT GLY-13.
  6. "Molecular analysis of three maize 22 kDa auxin-binding protein genes -- transient promoter expression and regulatory regions."
    Schwob E., Choi S.-Y., Simmons C., Migliaccio F., Ilag L., Hesse T., Palme K., Soell D.
    Plant J. 4:423-432(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: cv. Wisconsin 22.
  7. "From auxin-binding protein to plant hormone receptor?"
    Napier R.M., Venis M.A.
    Trends Biochem. Sci. 16:72-75(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: REVIEW.
  8. "Mass spectrometric analysis reveals a cysteine bridge between residues 2 and 61 of the auxin-binding protein 1 from Zea mays L."
    Feckler C., Muster G., Feser W., Romer A., Palme K.
    FEBS Lett. 509:446-450(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: PRELIMINARY DISULFIDE BOND.
  9. "Crystal structure of auxin-binding protein 1 in complex with auxin."
    Woo E.J., Marshall J., Bauly J., Chen J.G., Venis M., Napier R.M., Pickersgill R.W.
    EMBO J. 21:2877-2885(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.9 ANGSTROMS) IN COMPLEX WITH AUXIN AND ZINC ION, GLYCOSYLATION, MUTAGENESIS OF 199-ASP-GLU-200, DISULFIDE BOND.

Entry informationi

Entry nameiABP1_MAIZE
AccessioniPrimary (citable) accession number: P13689
Secondary accession number(s): Q41193
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 1, 1990
Last sequence update: January 1, 1990
Last modified: October 29, 2014
This is version 104 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Caution

Was originally thought to have a disulfide bond between Cys-40 and Cys-99.1 Publication

Keywords - Technical termi

3D-structure

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

External Data

Dasty 3