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Protein

Auxin-binding protein 1

Gene

ABP1

Organism
Zea mays (Maize)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Receptor for the plant hormone auxin.1 Publication

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sitei84 – 841Auxin binding1 Publication
Metal bindingi95 – 951Zinc; via tele nitrogen1 Publication
Metal bindingi97 – 971Zinc; via tele nitrogen1 Publication
Metal bindingi101 – 1011Zinc1 Publication
Metal bindingi144 – 1441Zinc; via tele nitrogen1 Publication

GO - Molecular functioni

  • auxin binding Source: UniProtKB
  • receptor activity Source: InterPro
  • zinc ion binding Source: UniProtKB

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Receptor

Keywords - Biological processi

Auxin signaling pathway

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Auxin-binding protein 11 Publication
Short name:
ABP1 Publication
Alternative name(s):
ERABP11 Publication
Gene namesi
Name:ABP11 Publication
Synonyms:AUX3111 Publication
OrganismiZea mays (Maize)
Taxonomic identifieri4577 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeZea
ProteomesiUP000007305 Componenti: Unplaced

Organism-specific databases

GrameneiP13689.
MaizeGDBi25342.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Endoplasmic reticulum

Pathology & Biotechi

Mutagenesis

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Mutagenesisi199 – 2002DE → EQ: Prevents ER retention. 1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 38382 PublicationsAdd
BLAST
Chaini39 – 201163Auxin-binding protein 1PRO_0000020614Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi40 ↔ 1931 Publication
Glycosylationi133 – 1331N-linked (GlcNAc...)1 Publication

Post-translational modificationi

Glycosylated.2 Publications

Keywords - PTMi

Disulfide bond, Glycoprotein

Proteomic databases

PRIDEiP13689.

Expressioni

Tissue specificityi

Expressed in roots, coleoptiles, leaves, stems, tassels and ears.1 Publication

Interactioni

Subunit structurei

Homodimer.1 Publication

Protein-protein interaction databases

STRINGi4577.GRMZM2G116204_P01.

Structurei

Secondary structure

1
201
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi46 – 494Combined sources
Helixi50 – 523Combined sources
Beta strandi63 – 697Combined sources
Helixi71 – 744Combined sources
Beta strandi77 – 8610Combined sources
Beta strandi94 – 996Combined sources
Beta strandi101 – 1077Combined sources
Beta strandi110 – 1145Combined sources
Beta strandi117 – 1215Combined sources
Beta strandi126 – 1305Combined sources
Beta strandi134 – 1385Combined sources
Beta strandi144 – 1474Combined sources
Beta strandi151 – 1533Combined sources
Beta strandi155 – 16511Combined sources
Beta strandi168 – 1736Combined sources
Helixi178 – 1803Combined sources
Beta strandi182 – 1865Combined sources
Turni188 – 1903Combined sources
Helixi191 – 1966Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1LR5X-ray1.90A/B/C/D39-201[»]
1LRHX-ray1.90A/B/C/D39-201[»]
ProteinModelPortaliP13689.
SMRiP13689. Positions 39-198.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP13689.

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni60 – 634Auxin binding1 Publication
Regioni92 – 932Auxin binding1 Publication
Regioni187 – 1893Auxin binding1 Publication

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi198 – 2014Prevents secretion from ERSequence Analysis

Keywords - Domaini

Signal

Family and domain databases

Gene3Di2.60.120.10. 1 hit.
InterProiIPR000526. Auxin-bd.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF02041. Auxin_BP. 1 hit.
[Graphical view]
PRINTSiPR00655. AUXINBINDNGP.
SUPFAMiSSF51182. SSF51182. 1 hit.
PROSITEiPS00014. ER_TARGET. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P13689-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAPDLSELAA AAAARGAYLA GVGVAVLLAA SFLPVAESSC VRDNSLVRDI
60 70 80 90 100
SQMPQSSYGI EGLSHITVAG ALNHGMKEVE VWLQTISPGQ RTPIHRHSCE
110 120 130 140 150
EVFTVLKGKG TLLMGSSSLK YPGQPQEIPF FQNTTFSIPV NDPHQVWNSD
160 170 180 190 200
EHEDLQVLVI ISRPPAKIFL YDDWSMPHTA AVLKFPFVWD EDCFEAAKDE

L
Length:201
Mass (Da):21,977
Last modified:January 1, 1990 - v1
Checksum:i1AF11DFEC247D9D0
GO

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti13 – 131A → G.1 Publication
Natural varianti141 – 1411N → S.

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X16309 mRNA. Translation: CAA34376.1.
J04550 mRNA. Translation: AAA33436.1.
X56737 Genomic DNA. Translation: CAA40061.1.
X16308 mRNA. Translation: CAA34375.1.
S53630 mRNA. Translation: AAB25115.1.
L08425 Genomic DNA. Translation: AAA33430.1.
PIRiS16262.
RefSeqiNP_001105312.1. NM_001111842.1.
UniGeneiZm.152.

Genome annotation databases

GeneIDi542232.
KEGGizma:542232.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X16309 mRNA. Translation: CAA34376.1.
J04550 mRNA. Translation: AAA33436.1.
X56737 Genomic DNA. Translation: CAA40061.1.
X16308 mRNA. Translation: CAA34375.1.
S53630 mRNA. Translation: AAB25115.1.
L08425 Genomic DNA. Translation: AAA33430.1.
PIRiS16262.
RefSeqiNP_001105312.1. NM_001111842.1.
UniGeneiZm.152.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1LR5X-ray1.90A/B/C/D39-201[»]
1LRHX-ray1.90A/B/C/D39-201[»]
ProteinModelPortaliP13689.
SMRiP13689. Positions 39-198.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi4577.GRMZM2G116204_P01.

Proteomic databases

PRIDEiP13689.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi542232.
KEGGizma:542232.

Organism-specific databases

GrameneiP13689.
MaizeGDBi25342.

Miscellaneous databases

EvolutionaryTraceiP13689.

Family and domain databases

Gene3Di2.60.120.10. 1 hit.
InterProiIPR000526. Auxin-bd.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF02041. Auxin_BP. 1 hit.
[Graphical view]
PRINTSiPR00655. AUXINBINDNGP.
SUPFAMiSSF51182. SSF51182. 1 hit.
PROSITEiPS00014. ER_TARGET. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Molecular cloning and structural analysis of a gene from Zea mays (L.) coding for a putative receptor for the plant hormone auxin."
    Hesse T., Feldwisch J., Balshuesemann D., Bauw G., Puype M., Vandekerckhove J., Loebler M., Klaembt D., Schell J., Palme K.
    EMBO J. 8:2453-2461(1989) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], PROTEIN SEQUENCE OF 39-67; 78-91; 110-119 AND 185-194, SUBCELLULAR LOCATION, GLYCOSYLATION.
    Tissue: Coleoptile.
  2. "cDNA clones of the auxin-binding protein from corn coleoptiles (Zea mays L.): isolation and characterization by immunological methods."
    Tillmann U., Viola G., Kayser B., Siemeister G., Hesse T., Palme K., Loebler M., Klaembt D.
    EMBO J. 8:2463-2467(1989) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
  3. "Auxin-binding protein located in the endoplasmic reticulum of maize shoots: molecular cloning and complete primary structure."
    Inohara N., Shimomura S., Fukui T., Futai M.
    Proc. Natl. Acad. Sci. U.S.A. 86:3564-3568(1989) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], PROTEIN SEQUENCE OF 39-69.
    Strain: cv. Golden cross Bantam.
  4. "Structure and sequence of an auxin-binding protein gene from maize (Zea mays L.)."
    Yu L.X., Lazarus C.M.
    Plant Mol. Biol. 16:925-930(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: cv. LG11.
    Tissue: Shoot.
  5. "Auxin-binding protein -- antibodies and genes."
    Lazarus C.M., Napier R.M., Yu L.X., Lynas C., Venis M.A.
    Symp. Soc. Exp. Biol. 45:129-148(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], VARIANT GLY-13.
  6. "Molecular analysis of three maize 22 kDa auxin-binding protein genes -- transient promoter expression and regulatory regions."
    Schwob E., Choi S.-Y., Simmons C., Migliaccio F., Ilag L., Hesse T., Palme K., Soell D.
    Plant J. 4:423-432(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], TISSUE SPECIFICITY.
    Strain: cv. Wisconsin 22.
  7. "From auxin-binding protein to plant hormone receptor?"
    Napier R.M., Venis M.A.
    Trends Biochem. Sci. 16:72-75(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: REVIEW.
  8. "Mass spectrometric analysis reveals a cysteine bridge between residues 2 and 61 of the auxin-binding protein 1 from Zea mays L."
    Feckler C., Muster G., Feser W., Romer A., Palme K.
    FEBS Lett. 509:446-450(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: PRELIMINARY DISULFIDE BOND.
  9. "Crystal structure of auxin-binding protein 1 in complex with auxin."
    Woo E.J., Marshall J., Bauly J., Chen J.G., Venis M., Napier R.M., Pickersgill R.W.
    EMBO J. 21:2877-2885(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.9 ANGSTROMS) OF 39-201 IN COMPLEX WITH AUXIN AND ZINC ION, GLYCOSYLATION AT ASN-133, MUTAGENESIS OF 199-ASP-GLU-200, DISULFIDE BOND, SUBUNIT.

Entry informationi

Entry nameiABP1_MAIZE
AccessioniPrimary (citable) accession number: P13689
Secondary accession number(s): Q41193
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 1, 1990
Last sequence update: January 1, 1990
Last modified: June 24, 2015
This is version 110 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Caution

Was originally thought to have a disulfide bond between Cys-40 and Cys-99.1 Publication

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.