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Protein

ATP synthase subunit d, mitochondrial

Gene

ATP5H

Organism
Bos taurus (Bovine)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Mitochondrial membrane ATP synthase (F1F0 ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F1 - containing the extramembraneous catalytic core, and F0 - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F1 is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F0 domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha3beta3 subcomplex and subunit a/ATP6 static relative to the rotary elements.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Hydrogen ion transport, Ion transport, Transport

Enzyme and pathway databases

ReactomeiR-BTA-163210. Formation of ATP by chemiosmotic coupling.

Names & Taxonomyi

Protein namesi
Recommended name:
ATP synthase subunit d, mitochondrial
Short name:
ATPase subunit d
Gene namesi
Name:ATP5H
OrganismiBos taurus (Bovine)
Taxonomic identifieri9913 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaRuminantiaPecoraBovidaeBovinaeBos
Proteomesi
  • UP000009136 Componenti: Chromosome 19

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

CF(0), Membrane, Mitochondrion, Mitochondrion inner membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved1 Publication
ChainiPRO_00000716722 – 161ATP synthase subunit d, mitochondrialAdd BLAST160

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei2N-acetylalanine1 Publication1
Modified residuei85N6-acetyllysineBy similarity1
Modified residuei95N6-acetyllysineBy similarity1
Modified residuei117N6-acetyllysineBy similarity1
Modified residuei149N6-acetyllysineBy similarity1

Keywords - PTMi

Acetylation

Proteomic databases

PaxDbiP13620.
PeptideAtlasiP13620.
PRIDEiP13620.

Expressioni

Gene expression databases

BgeeiENSBTAG00000021227.

Interactioni

Subunit structurei

F-type ATPases have 2 components, CF1 - the catalytic core - and CF0 - the membrane proton channel. CF0 seems to have nine subunits: a, b, c, d, e, f, g, F6 and 8 (or A6L). Component of an ATP synthase complex composed of ATP5F1, ATP5G1, ATP5E, ATP5H, ATP5I, ATP5J, ATP5J2, MT-ATP6, MT-ATP8, ATP5A1, ATP5B, ATP5D, ATP5C1, ATP5O, ATP5L, USMG5 and MP68.1 Publication

Protein-protein interaction databases

DIPiDIP-39020N.
IntActiP13620. 2 interactors.
MINTiMINT-5006994.
STRINGi9913.ENSBTAP00000028282.

Structurei

Secondary structure

1161
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi13 – 17Combined sources5
Helixi22 – 24Combined sources3
Helixi25 – 44Combined sources20
Helixi54 – 59Combined sources6
Helixi66 – 74Combined sources9
Helixi89 – 99Combined sources11
Helixi101 – 122Combined sources22

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2CLYX-ray2.80B/E2-161[»]
2WSSX-ray3.20U2-119[»]
4B2Qelectron microscopy37.00U/u5-124[»]
5ARAelectron microscopy6.70U2-125[»]
5AREelectron microscopy7.40U2-125[»]
5ARHelectron microscopy7.20U2-125[»]
5ARIelectron microscopy7.40U2-125[»]
5FIJelectron microscopy7.40U2-125[»]
5FIKelectron microscopy6.40U2-125[»]
5FILelectron microscopy7.10U2-125[»]
ProteinModelPortaliP13620.
SMRiP13620.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP13620.

Family & Domainsi

Sequence similaritiesi

Belongs to the ATPase d subunit family.Curated

Phylogenomic databases

eggNOGiKOG3366. Eukaryota.
ENOG4111IHJ. LUCA.
GeneTreeiENSGT00390000003582.
HOGENOMiHOG000267023.
HOVERGENiHBG050612.
InParanoidiP13620.
KOiK02138.
OMAiPYPQDKV.
OrthoDBiEOG091G0MQA.
TreeFamiTF314031.

Family and domain databases

InterProiIPR008689. ATP_synth_F0_dsu_mt.
[Graphical view]
PANTHERiPTHR12700. PTHR12700. 1 hit.
PIRSFiPIRSF005514. ATPase_F0_D_mt. 1 hit.
SUPFAMiSSF161065. SSF161065. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P13620-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAGRKLALKT IDWVAFGEII PRNQKAVANS LKSWNETLTS RLATLPEKPP
60 70 80 90 100
AIDWAYYKAN VAKAGLVDDF EKKFNALKVP IPEDKYTAQV DAEEKEDVKS
110 120 130 140 150
CAEFLTQSKT RIQEYEKELE KMRNIIPFDQ MTIEDLNEVF PETKLDKKKY
160
PYWPHRPIET L
Length:161
Mass (Da):18,692
Last modified:January 23, 2007 - v2
Checksum:i60ED98258E57C7E1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X06089 mRNA. Translation: CAA29473.1.
BC104564 mRNA. Translation: AAI04565.1.
PIRiS00764.
RefSeqiNP_777149.1. NM_174724.4.
UniGeneiBt.5029.

Genome annotation databases

EnsembliENSBTAT00000028282; ENSBTAP00000028282; ENSBTAG00000021227.
GeneIDi282710.
KEGGibta:282710.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X06089 mRNA. Translation: CAA29473.1.
BC104564 mRNA. Translation: AAI04565.1.
PIRiS00764.
RefSeqiNP_777149.1. NM_174724.4.
UniGeneiBt.5029.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2CLYX-ray2.80B/E2-161[»]
2WSSX-ray3.20U2-119[»]
4B2Qelectron microscopy37.00U/u5-124[»]
5ARAelectron microscopy6.70U2-125[»]
5AREelectron microscopy7.40U2-125[»]
5ARHelectron microscopy7.20U2-125[»]
5ARIelectron microscopy7.40U2-125[»]
5FIJelectron microscopy7.40U2-125[»]
5FIKelectron microscopy6.40U2-125[»]
5FILelectron microscopy7.10U2-125[»]
ProteinModelPortaliP13620.
SMRiP13620.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-39020N.
IntActiP13620. 2 interactors.
MINTiMINT-5006994.
STRINGi9913.ENSBTAP00000028282.

Proteomic databases

PaxDbiP13620.
PeptideAtlasiP13620.
PRIDEiP13620.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSBTAT00000028282; ENSBTAP00000028282; ENSBTAG00000021227.
GeneIDi282710.
KEGGibta:282710.

Organism-specific databases

CTDi10476.

Phylogenomic databases

eggNOGiKOG3366. Eukaryota.
ENOG4111IHJ. LUCA.
GeneTreeiENSGT00390000003582.
HOGENOMiHOG000267023.
HOVERGENiHBG050612.
InParanoidiP13620.
KOiK02138.
OMAiPYPQDKV.
OrthoDBiEOG091G0MQA.
TreeFamiTF314031.

Enzyme and pathway databases

ReactomeiR-BTA-163210. Formation of ATP by chemiosmotic coupling.

Miscellaneous databases

EvolutionaryTraceiP13620.

Gene expression databases

BgeeiENSBTAG00000021227.

Family and domain databases

InterProiIPR008689. ATP_synth_F0_dsu_mt.
[Graphical view]
PANTHERiPTHR12700. PTHR12700. 1 hit.
PIRSFiPIRSF005514. ATPase_F0_D_mt. 1 hit.
SUPFAMiSSF161065. SSF161065. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiATP5H_BOVIN
AccessioniPrimary (citable) accession number: P13620
Secondary accession number(s): Q3SX10
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 1, 1990
Last sequence update: January 23, 2007
Last modified: November 30, 2016
This is version 116 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.