Reviewed, UniProtKB/Swiss-Prot P13518 (YHDA_ECOLI)

Names and originHide

Protein names

Recommended name:
Uncharacterized protein yhdA

Gene names

Name:	yhdA
Ordered Locus Names:	b3252, JW3221

Organism

Escherichia coli (strain K12) [Complete proteome] [HAMAP]

Taxonomic identifier

83333 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Escherichia

Protein attributesHide

Sequence length	646 AA.
Sequence status	Complete.
Protein existence	Predicted.

General annotation (Comments)Hide

Sequence similarities

Contains 1 EAL domain. Contains 1 GGDEF domain.

OntologiesHide

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)Hide

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 646	646	Uncharacterized protein yhdA		PRO_0000169492
Regions
	Domain	254 – 387	134	GGDEF
	Domain	396 – 644	249	EAL

SequencesHide

	Sequence		Length	Mass (Da)
	P13518-1 [UniParc]. Last modified November 1, 1995. Version 2. Checksum: 0387E011BC4D06B8	FASTA	646	73,339
	10 20 30 40 50 60 MRLTTKFSAF VTLLTGLTIF VTLLGCSLSF YNAIQYKFSH RVQAVATAID THLVSNDFSV 70 80 90 100 110 120 LRPQITELMM SADIVRVDLL HGDKQVYTLA RNGSYRPVGS SDLFRELSVP LIKHPGMSLR 130 140 150 160 170 180 LVYQDPMGNY FHSLMTTAPL TGAIGFIIVM LFLAVRWLQR QLAGQELLET RATRILNGER 190 200 210 220 230 240 GSNVLGTIYE WPPRTSSALD TLLREIQNAR EQHSRLDTLI RSYAAQDVKT GLNNRLFFDN 250 260 270 280 290 300 QLATLLEDQE KVGTHGIVMM IRLPDFNMLS DTWGHSQVEE QFFTLTNLLS TFMMRYPGAL 310 320 330 340 350 360 LARYHRSDFA ALLPHRTLKE AESIAGQLIK AVDTLPNNKM LDRDDMIHIG ICAWRSGQDT 370 380 390 400 410 420 EQVMEHAESA TRNAGLQGGN SWAIYDDSLP EKGRGNVRWR TLIEQMLSRG GPRLYQKPAV 430 440 450 460 470 480 TREGQVHHRE LMCRIFDGNE EVSSAEYMPM VLQFGLSEEY DRLQISRLIP LLRYWPEENL 490 500 510 520 530 540 AIQVTVESLI RPRFQRWLRD TLMQCEKSQR KRIIIELAEA DVGQHISRLQ PVIRLVNALG 550 560 570 580 590 600 VRVAVNQAGL TLVSTSWIKE LNVELLKLHP GLVRNIEKRT ENQLLVQSLV EACSGTSTQV 610 620 630 640 YATGVRSRSE WQTLIQRGVT GGQGDFFASS QPLDTNVKKY SQRYSV

ReferencesHide

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The complete genome sequence of Escherichia coli K-12." Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y. Science 277:1453-1474(1997) [PubMed: 9278503] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / MG1655 / ATCC 47076.
[2]	"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110." Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T. Mol. Syst. Biol. 2:E1-E5(2006) [PubMed: 16738553] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
[3]	"Determinations of the DNA sequence of the mreB gene and of the gene products of the mre region that function in formation of the rod shape of Escherichia coli cells." Doi M., Wachi M., Ishino F., Tomioka S., Ito M., Sakagami Y., Suzuki A., Matsuhashi M. J. Bacteriol. 170:4619-4624(1988) [PubMed: 3049542] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 545-646. Strain: K12.

Cross-referencesHide

Sequence databases
EMBL GenBank DDBJ	U18997 Genomic DNA. Translation: AAA58055.1. U00096 Genomic DNA. Translation: AAC76284.1. AP009048 Genomic DNA. Translation: BAE77294.1. M22055 Genomic DNA. Translation: AAA83890.1.
PIR	QQECE5. F65117.
RefSeq	AP_003793.1. NP_417718.1.
3D structure databases
SMR	P13518. Positions 208-387, 401-638.
ModBase	Search...
Protein-protein interaction databases
DIP	DIP-12292N.
MINT	MINT-1286606.
STRING	P13518.
Proteomic databases
PRIDE	P13518.
Genome annotation databases
EnsemblBacteria	EBESCT00000004605; EBESCP00000004605; EBESCG00000003754. EBESCT00000016596; EBESCP00000015887; EBESCG00000015655.
GeneID	947702.
GenomeReviews	Gene locus JW3221 in contig AP009048_GR. Gene locus b3252 in contig U00096_GR.
KEGG	ecj:JW3221. eco:b3252.
Organism-specific databases
EchoBASE	EB0018.
EcoGene	EG10018. yhdA.
CMR	Search...
Phylogenomic databases
eggNOG	COG2200.
HOGENOM	HBG677930.
OMA	WFMYDKG.
ProtClustDB	PRK11059.
Enzyme and pathway databases
BioCyc	EcoCyc:EG10018-MONOMER. ECOL168927:B3252-MONOMER.
Gene expression databases
Genevestigator	P13518.
Family and domain databases
InterPro	IPR000160. Diguanylate_cyclase-pred. IPR001633. Diiguanylate_Pesterase-pred. [Graphical view]
Pfam	PF00563. EAL. 1 hit. PF00990. GGDEF. 1 hit. [Graphical view]
SMART	SM00052. EAL. 1 hit. SM00267. GGDEF. 1 hit. [Graphical view]
TIGRFAMs	TIGR00254. GGDEF. 1 hit.
PROSITE	PS50883. EAL. 1 hit. PS50887. GGDEF. 1 hit. PS51257. PROKAR_LIPOPROTEIN. 1 hit. Uncertain. [Graphical view]
ProtoNet	Search...

Entry informationHide

Entry name

YHDA_ECOLI

Accession

Primary (citable) accession number: P13518
Secondary accession number(s): Q2M8W2

Entry history

Integrated into UniProtKB/Swiss-Prot:	January 1, 1990
Last sequence update:	November 1, 1995
Last modified:	July 13, 2010
This is version 81 of the entry and version 2 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)