Reviewed,
UniProtKB/Swiss-Prot P13518 (YHDA_ECOLI)
Last modified
July 13, 2010.
Version 81.
History...
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90%,
50% identity |
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Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents
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Names and originHide
| Protein names | Recommended name: Uncharacterized protein yhdA | ||||
| Gene names |
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| Organism | Escherichia coli (strain K12) [Complete proteome] [HAMAP] | ||||
| Taxonomic identifier | 83333 [NCBI] | ||||
| Taxonomic lineage | Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Escherichia |
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Protein attributesHide
| Sequence length | 646 AA. |
| Sequence status | Complete. |
| Protein existence | Predicted. |
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General annotation (Comments)Hide
| Sequence similarities | Contains 1 EAL domain. Contains 1 GGDEF domain. |
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SequencesHide
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ReferencesHide
| « Hide 'large scale' references | |
| [1] | "The complete genome sequence of Escherichia coli K-12." Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y. Science 277:1453-1474(1997) [PubMed: 9278503] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / MG1655 / ATCC 47076. |
| [2] | "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110." Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T. Mol. Syst. Biol. 2:E1-E5(2006) [PubMed: 16738553] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / W3110 / ATCC 27325 / DSM 5911. |
| [3] | "Determinations of the DNA sequence of the mreB gene and of the gene products of the mre region that function in formation of the rod shape of Escherichia coli cells." Doi M., Wachi M., Ishino F., Tomioka S., Ito M., Sakagami Y., Suzuki A., Matsuhashi M. J. Bacteriol. 170:4619-4624(1988) [PubMed: 3049542] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 545-646. Strain: K12. |
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Cross-referencesHide
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | U18997 Genomic DNA. Translation: AAA58055.1. U00096 Genomic DNA. Translation: AAC76284.1. AP009048 Genomic DNA. Translation: BAE77294.1. M22055 Genomic DNA. Translation: AAA83890.1. |
| PIR | QQECE5. F65117. |
| RefSeq | AP_003793.1. NP_417718.1. |
3D structure databases | |
| SMR | P13518. Positions 208-387, 401-638. |
| ModBase | Search... |
Protein-protein interaction databases | |
| DIP | DIP-12292N. |
| MINT | MINT-1286606. |
| STRING | P13518. |
Proteomic databases | |
| PRIDE | P13518. |
Genome annotation databases | |
| EnsemblBacteria | EBESCT00000004605; EBESCP00000004605; EBESCG00000003754. EBESCT00000016596; EBESCP00000015887; EBESCG00000015655. |
| GeneID | 947702. |
| GenomeReviews | Gene locus JW3221 in contig AP009048_GR. Gene locus b3252 in contig U00096_GR. |
| KEGG | ecj:JW3221. eco:b3252. |
Organism-specific databases | |
| EchoBASE | EB0018. |
| EcoGene | EG10018. yhdA. |
| CMR | Search... |
Phylogenomic databases | |
| eggNOG | COG2200. |
| HOGENOM | HBG677930. |
| OMA | WFMYDKG. |
| ProtClustDB | PRK11059. |
Enzyme and pathway databases | |
| BioCyc | EcoCyc:EG10018-MONOMER. ECOL168927:B3252-MONOMER. |
Gene expression databases | |
| Genevestigator | P13518. |
Family and domain databases | |
| InterPro | IPR000160. Diguanylate_cyclase-pred. IPR001633. Diiguanylate_Pesterase-pred. [Graphical view] |
| Pfam | PF00563. EAL. 1 hit. PF00990. GGDEF. 1 hit. [Graphical view] |
| SMART | SM00052. EAL. 1 hit. SM00267. GGDEF. 1 hit. [Graphical view] |
| TIGRFAMs | TIGR00254. GGDEF. 1 hit. |
| PROSITE | PS50883. EAL. 1 hit. PS50887. GGDEF. 1 hit. PS51257. PROKAR_LIPOPROTEIN. 1 hit. Uncertain. [Graphical view] |
| ProtoNet | Search... |
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Entry informationHide
| Entry name | YHDA_ECOLI | ||||||||
| Accession | Primary (citable) accession number: P13518 Secondary accession number(s): Q2M8W2 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes) | ||||||||
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Relevant documentsHide
| Escherichia coli Escherichia coli (strain K12): entries and cross-references to EcoGene |
| SIMILARITY comments Index of protein domains and families |

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