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Protein

UPF0098 protein YbhB

Gene

ybhB

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG11238-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0098 protein YbhB
Gene namesi
Name:ybhB
Ordered Locus Names:b0773, JW0756
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11238 ybhB

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001379001 – 158UPF0098 protein YbhBAdd BLAST158

Proteomic databases

PaxDbiP12994
PRIDEiP12994

Interactioni

Subunit structurei

Homodimer.

Protein-protein interaction databases

BioGridi4261840, 25 interactors
IntActiP12994, 6 interactors
STRINGi316385.ECDH10B_0841

Structurei

Secondary structure

1158
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi2 – 4Combined sources3
Helixi16 – 18Combined sources3
Beta strandi34 – 37Combined sources4
Beta strandi45 – 52Combined sources8
Turni56 – 59Combined sources4
Beta strandi61 – 70Combined sources10
Helixi80 – 82Combined sources3
Beta strandi99 – 102Combined sources4
Beta strandi114 – 126Combined sources13
Helixi136 – 146Combined sources11
Beta strandi147 – 157Combined sources11

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1FJJX-ray1.66A1-158[»]
1VI3X-ray1.76A2-158[»]
ProteinModelPortaliP12994
SMRiP12994
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP12994

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0098 family.Curated

Phylogenomic databases

eggNOGiENOG4108V1U Bacteria
COG1881 LUCA
HOGENOMiHOG000236247
InParanoidiP12994
KOiK06910
OMAiLAWDEVP
PhylomeDBiP12994

Family and domain databases

CDDicd00865 PEBP_bact_arch, 1 hit
Gene3Di3.90.280.10, 1 hit
InterProiView protein in InterPro
IPR008914 PEBP
IPR036610 PEBP-like_sf
IPR005247 YbhB_YbcL
PANTHERiPTHR30289 PTHR30289, 1 hit
PfamiView protein in Pfam
PF01161 PBP, 1 hit
SUPFAMiSSF49777 SSF49777, 1 hit
TIGRFAMsiTIGR00481 TIGR00481, 1 hit

Sequencei

Sequence statusi: Complete.

P12994-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKLISNDLRD GDKLPHRHVF NGMGYDGDNI SPHLAWDDVP AGTKSFVVTC
60 70 80 90 100
YDPDAPTGSG WWHWVVVNLP ADTRVLPQGF GSGLVAMPDG VLQTRTDFGK
110 120 130 140 150
TGYDGAAPPK GETHRYIFTV HALDIERIDV DEGASGAMVG FNVHFHSLAS

ASITAMFS
Length:158
Mass (Da):17,085
Last modified:November 1, 1997 - v2
Checksum:i0AD6F21157060A4C
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti136G → A in AAA23513 (PubMed:3058702).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
J04423 Genomic DNA Translation: AAA23513.1
U00096 Genomic DNA Translation: AAC73860.1
AP009048 Genomic DNA Translation: BAE76360.1
PIRiE64813 Q3ECBA
RefSeqiNP_415294.1, NC_000913.3
WP_000767389.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC73860; AAC73860; b0773
BAE76360; BAE76360; BAE76360
GeneIDi945383
KEGGiecj:JW0756
eco:b0773
PATRICifig|1411691.4.peg.1505

Similar proteinsi

Entry informationi

Entry nameiYBHB_ECOLI
AccessioniPrimary (citable) accession number: P12994
Secondary accession number(s): P75766, Q2MBJ6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 1, 1990
Last sequence update: November 1, 1997
Last modified: March 28, 2018
This is version 136 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families
  4. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

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