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Protein

50S ribosomal protein L32e

Gene

rpl32e

Organism
Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Binds to the 23S rRNA.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciHMAR272569:GJDH-1451-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L32e
Alternative name(s):
Hl5
Gene namesi
Name:rpl32e
Ordered Locus Names:rrnAC1595
OrganismiHaloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui)
Taxonomic identifieri272569 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaHalobacteriaHalobacterialesHalobacteriaceaeHaloarcula
Proteomesi
  • UP000001169 Componenti: Chromosome I

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methionineiRemoved1 Publication
Chaini2 – 24124050S ribosomal protein L32ePRO_0000131148Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Interacts weakly with protein L15.2 Publications

Protein-protein interaction databases

STRINGi272569.rrnAC1595.

Structurei

Secondary structure

1
241
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi97 – 1004Combined sources
Helixi112 – 12413Combined sources
Helixi134 – 1363Combined sources
Beta strandi138 – 1403Combined sources
Turni153 – 1575Combined sources
Helixi167 – 1693Combined sources
Turni173 – 1775Combined sources
Beta strandi184 – 1907Combined sources
Helixi191 – 1944Combined sources
Turni199 – 2013Combined sources
Beta strandi202 – 2065Combined sources
Beta strandi208 – 2103Combined sources
Helixi212 – 22413Combined sources
Beta strandi229 – 2313Combined sources
Beta strandi234 – 2374Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1FFKX-ray2.40V99-241[»]
1JJ2X-ray2.40X2-241[»]
1K73X-ray3.01Z2-241[»]
1K8AX-ray3.00Z2-241[»]
1K9MX-ray3.00Z2-241[»]
1KC8X-ray3.01Z2-241[»]
1KD1X-ray3.00Z2-241[»]
1KQSX-ray3.10X2-241[»]
1M1KX-ray3.20Z2-241[»]
1M90X-ray2.80Z2-241[»]
1N8RX-ray3.00Z2-241[»]
1NJIX-ray3.00Z2-241[»]
1Q7YX-ray3.20Z2-241[»]
1Q81X-ray2.95Z2-241[»]
1Q82X-ray2.98Z2-241[»]
1Q86X-ray3.00Z2-241[»]
1QVFX-ray3.10X2-241[»]
1QVGX-ray2.90X2-241[»]
1S72X-ray2.40Y1-241[»]
1VQ4X-ray2.70Y1-241[»]
1VQ5X-ray2.60Y1-241[»]
1VQ6X-ray2.70Y1-241[»]
1VQ7X-ray2.50Y1-241[»]
1VQ8X-ray2.20Y1-241[»]
1VQ9X-ray2.40Y1-241[»]
1VQKX-ray2.30Y1-241[»]
1VQLX-ray2.30Y1-241[»]
1VQMX-ray2.30Y1-241[»]
1VQNX-ray2.40Y1-241[»]
1VQOX-ray2.20Y1-241[»]
1VQPX-ray2.25Y1-241[»]
1W2BX-ray3.50X2-241[»]
1YHQX-ray2.40Y1-241[»]
1YI2X-ray2.65Y1-241[»]
1YIJX-ray2.60Y1-241[»]
1YITX-ray2.80Y1-241[»]
1YJ9X-ray2.90Y1-241[»]
1YJNX-ray3.00Y1-241[»]
1YJWX-ray2.90Y1-241[»]
2OTJX-ray2.90Y1-241[»]
2OTLX-ray2.70Y1-241[»]
2QA4X-ray3.00Y1-241[»]
2QEXX-ray2.90Y1-241[»]
3CC2X-ray2.40Y1-241[»]
3CC4X-ray2.70Y1-241[»]
3CC7X-ray2.70Y1-241[»]
3CCEX-ray2.75Y1-241[»]
3CCJX-ray2.70Y1-241[»]
3CCLX-ray2.90Y1-241[»]
3CCMX-ray2.55Y1-241[»]
3CCQX-ray2.90Y1-241[»]
3CCRX-ray3.00Y1-241[»]
3CCSX-ray2.95Y1-241[»]
3CCUX-ray2.80Y1-241[»]
3CCVX-ray2.90Y1-241[»]
3CD6X-ray2.75Y1-241[»]
3CMAX-ray2.80Y1-240[»]
3CMEX-ray2.95Y1-240[»]
3CPWX-ray2.70X1-241[»]
3CXCX-ray3.00X2-241[»]
3G4SX-ray3.20Y96-237[»]
3G6EX-ray2.70Y96-237[»]
3G71X-ray2.85Y96-237[»]
3I55X-ray3.11Y1-241[»]
3I56X-ray2.90Y1-241[»]
3OW2X-ray2.70X96-237[»]
4ADXelectron microscopy6.60Y1-241[»]
4V9FX-ray2.40Y1-241[»]
ProteinModelPortaliP12736.
SMRiP12736. Positions 96-237.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP12736.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L32e family.Curated

Phylogenomic databases

eggNOGiarCOG00781. Archaea.
COG0468. LUCA.
COG1717. LUCA.
HOGENOMiHOG000038489.
KOiK02912.
OMAiKPQFNRQ.

Family and domain databases

CDDicd00513. Ribosomal_L32_L32e. 1 hit.
HAMAPiMF_00810. Ribosomal_L32e. 1 hit.
InterProiIPR010995. DNA_repair_Rad51/TF_NusA_a-hlx.
IPR003583. Hlx-hairpin-Hlx_DNA-bd_motif.
IPR001515. Ribosomal_L32e.
IPR023654. Ribosomal_L32e_arc.
IPR018263. Ribosomal_L32e_CS.
[Graphical view]
PfamiPF01655. Ribosomal_L32e. 1 hit.
[Graphical view]
ProDomiPD003823. Ribosomal_L32e. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTiSM00278. HhH1. 2 hits.
SM01393. Ribosomal_L32e. 1 hit.
[Graphical view]
SUPFAMiSSF47794. SSF47794. 1 hit.
SSF52042. SSF52042. 1 hit.
PROSITEiPS00580. RIBOSOMAL_L32E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P12736-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MADNEEDVEA EEEYTELTDI SGVGPSKAES LREAGFESVE DVRGADQSAL
60 70 80 90 100
ADVSGIGNAL AARIKADVGG LEVESETEAE VEEEGGEEAP DEDVETELQA
110 120 130 140 150
RGLTEKTPDL SDEDARLLTQ RHRVGKPQFN RQDHHKKKRV STSWRKPRGQ
160 170 180 190 200
LSKQRRGIKG KGDTVEAGFR SPTAVRGKHP SGFEEVRVHN VDDLEGVDGD
210 220 230 240
TEAVRIASKV GARKRERIEE EAEDAGIRVL NPTYVEVEVS E
Length:241
Mass (Da):26,416
Last modified:January 23, 2007 - v3
Checksum:iF4FFF58DE34B3711
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti26 – 261S → R AA sequence (PubMed:3196689).Curated
Sequence conflicti31 – 311Missing AA sequence (PubMed:3196689).Curated
Sequence conflicti110 – 1112LS → SL AA sequence (PubMed:3196689).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X58395 Genomic DNA. Translation: CAA41288.1.
AY596297 Genomic DNA. Translation: AAV46513.1.
PIRiS16539. R7HSH5.
RefSeqiWP_011223739.1. NC_006396.1.

Genome annotation databases

EnsemblBacteriaiAAV46513; AAV46513; rrnAC1595.
GeneIDi3128514.
KEGGihma:rrnAC1595.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X58395 Genomic DNA. Translation: CAA41288.1.
AY596297 Genomic DNA. Translation: AAV46513.1.
PIRiS16539. R7HSH5.
RefSeqiWP_011223739.1. NC_006396.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1FFKX-ray2.40V99-241[»]
1JJ2X-ray2.40X2-241[»]
1K73X-ray3.01Z2-241[»]
1K8AX-ray3.00Z2-241[»]
1K9MX-ray3.00Z2-241[»]
1KC8X-ray3.01Z2-241[»]
1KD1X-ray3.00Z2-241[»]
1KQSX-ray3.10X2-241[»]
1M1KX-ray3.20Z2-241[»]
1M90X-ray2.80Z2-241[»]
1N8RX-ray3.00Z2-241[»]
1NJIX-ray3.00Z2-241[»]
1Q7YX-ray3.20Z2-241[»]
1Q81X-ray2.95Z2-241[»]
1Q82X-ray2.98Z2-241[»]
1Q86X-ray3.00Z2-241[»]
1QVFX-ray3.10X2-241[»]
1QVGX-ray2.90X2-241[»]
1S72X-ray2.40Y1-241[»]
1VQ4X-ray2.70Y1-241[»]
1VQ5X-ray2.60Y1-241[»]
1VQ6X-ray2.70Y1-241[»]
1VQ7X-ray2.50Y1-241[»]
1VQ8X-ray2.20Y1-241[»]
1VQ9X-ray2.40Y1-241[»]
1VQKX-ray2.30Y1-241[»]
1VQLX-ray2.30Y1-241[»]
1VQMX-ray2.30Y1-241[»]
1VQNX-ray2.40Y1-241[»]
1VQOX-ray2.20Y1-241[»]
1VQPX-ray2.25Y1-241[»]
1W2BX-ray3.50X2-241[»]
1YHQX-ray2.40Y1-241[»]
1YI2X-ray2.65Y1-241[»]
1YIJX-ray2.60Y1-241[»]
1YITX-ray2.80Y1-241[»]
1YJ9X-ray2.90Y1-241[»]
1YJNX-ray3.00Y1-241[»]
1YJWX-ray2.90Y1-241[»]
2OTJX-ray2.90Y1-241[»]
2OTLX-ray2.70Y1-241[»]
2QA4X-ray3.00Y1-241[»]
2QEXX-ray2.90Y1-241[»]
3CC2X-ray2.40Y1-241[»]
3CC4X-ray2.70Y1-241[»]
3CC7X-ray2.70Y1-241[»]
3CCEX-ray2.75Y1-241[»]
3CCJX-ray2.70Y1-241[»]
3CCLX-ray2.90Y1-241[»]
3CCMX-ray2.55Y1-241[»]
3CCQX-ray2.90Y1-241[»]
3CCRX-ray3.00Y1-241[»]
3CCSX-ray2.95Y1-241[»]
3CCUX-ray2.80Y1-241[»]
3CCVX-ray2.90Y1-241[»]
3CD6X-ray2.75Y1-241[»]
3CMAX-ray2.80Y1-240[»]
3CMEX-ray2.95Y1-240[»]
3CPWX-ray2.70X1-241[»]
3CXCX-ray3.00X2-241[»]
3G4SX-ray3.20Y96-237[»]
3G6EX-ray2.70Y96-237[»]
3G71X-ray2.85Y96-237[»]
3I55X-ray3.11Y1-241[»]
3I56X-ray2.90Y1-241[»]
3OW2X-ray2.70X96-237[»]
4ADXelectron microscopy6.60Y1-241[»]
4V9FX-ray2.40Y1-241[»]
ProteinModelPortaliP12736.
SMRiP12736. Positions 96-237.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272569.rrnAC1595.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAV46513; AAV46513; rrnAC1595.
GeneIDi3128514.
KEGGihma:rrnAC1595.

Phylogenomic databases

eggNOGiarCOG00781. Archaea.
COG0468. LUCA.
COG1717. LUCA.
HOGENOMiHOG000038489.
KOiK02912.
OMAiKPQFNRQ.

Enzyme and pathway databases

BioCyciHMAR272569:GJDH-1451-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP12736.

Family and domain databases

CDDicd00513. Ribosomal_L32_L32e. 1 hit.
HAMAPiMF_00810. Ribosomal_L32e. 1 hit.
InterProiIPR010995. DNA_repair_Rad51/TF_NusA_a-hlx.
IPR003583. Hlx-hairpin-Hlx_DNA-bd_motif.
IPR001515. Ribosomal_L32e.
IPR023654. Ribosomal_L32e_arc.
IPR018263. Ribosomal_L32e_CS.
[Graphical view]
PfamiPF01655. Ribosomal_L32e. 1 hit.
[Graphical view]
ProDomiPD003823. Ribosomal_L32e. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTiSM00278. HhH1. 2 hits.
SM01393. Ribosomal_L32e. 1 hit.
[Graphical view]
SUPFAMiSSF47794. SSF47794. 1 hit.
SSF52042. SSF52042. 1 hit.
PROSITEiPS00580. RIBOSOMAL_L32E. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL32_HALMA
AccessioniPrimary (citable) accession number: P12736
Secondary accession number(s): Q5V1T9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1989
Last sequence update: January 23, 2007
Last modified: September 7, 2016
This is version 123 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.