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P12732 (RL23_HALMA) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 116. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L23P
Alternative name(s):
Hl25
Hmal23
L21
Gene names
Name:rpl23p
Ordered Locus Names:rrnAC1609
OrganismHaloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui) [Complete proteome] [HAMAP]
Taxonomic identifier272569 [NCBI]
Taxonomic lineageArchaeaEuryarchaeotaHalobacteriaHalobacterialesHalobacteriaceaeHaloarcula

Protein attributes

Sequence length85 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Binds to a specific region on the 23S rRNA. Located at the polypeptide exit tunnel on the outside of the subunit. HAMAP-Rule MF_01369

Subunit structure

Part of the 50S ribosomal subunit. Interacts with protein L29 and weakly with protein L39e. Ref.5 Ref.6 Ref.7 Ref.8 Ref.9 Ref.10 Ref.11 Ref.12 Ref.13

Sequence similarities

Belongs to the ribosomal protein L23P family.

Ontologies

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Initiator methionine11Removed Ref.1 Ref.4
Chain2 – 858450S ribosomal protein L23P HAMAP-Rule MF_01369
PRO_0000129435

Secondary structure

................. 85
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P12732 [UniParc].

Last modified January 23, 2007. Version 2.
Checksum: 2A2E869D640D5B60

FASTA859,602
        10         20         30         40         50         60 
MSWDVIKHPH VTEKAMNDMD FQNKLQFAVD DRASKGEVAD AVEEQYDVTV EQVNTQNTMD 

        70         80 
GEKKAVVRLS EDDDAQEVAS RIGVF 

« Hide

References

« Hide 'large scale' references
[1]"Complete amino acid sequences of the ribosomal proteins L25, L29 and L31 from the archaebacterium Halobacterium marismortui."
Hatakeyama T., Kimura M.
Eur. J. Biochem. 172:703-711(1988) [PubMed] [Europe PMC] [Abstract]
Cited for: PROTEIN SEQUENCE OF 2-85.
[2]"Organization and nucleotide sequence of a gene cluster coding for eight ribosomal proteins in the archaebacterium Halobacterium marismortui."
Arndt E., Kroemer W., Hatakeyama T.
J. Biol. Chem. 265:3034-3039(1990) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[3]"Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea."
Baliga N.S., Bonneau R., Facciotti M.T., Pan M., Glusman G., Deutsch E.W., Shannon P., Chiu Y., Weng R.S., Gan R.R., Hung P., Date S.V., Marcotte E., Hood L., Ng W.V.
Genome Res. 14:2221-2234(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809.
[4]"Extended N-terminal sequencing of proteins of archaebacterial ribosomes blotted from two-dimensional gels onto glass fiber and poly(vinylidene difluoride) membrane."
Walsh M.J., McDougall J., Wittmann-Liebold B.
Biochemistry 27:6867-6876(1988) [PubMed] [Europe PMC] [Abstract]
Cited for: PROTEIN SEQUENCE OF 2-23.
[5]"The complete atomic structure of the large ribosomal subunit at 2.4 A resolution."
Ban N., Nissen P., Hansen J., Moore P.B., Steitz T.A.
Science 289:905-920(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.4 ANGSTROMS) OF THE 50S SUBUNIT.
Strain: ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809.
[6]"The structural basis of ribosome activity in peptide bond synthesis."
Nissen P., Hansen J., Ban N., Moore P.B., Steitz T.A.
Science 289:920-930(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (3.0 ANGSTROMS) OF THE 50S SUBUNIT.
Strain: ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809.
[7]"A pre-translocational intermediate in protein synthesis observed in crystals of enzymatically active 50S subunits."
Schmeing T.M., Seila A.C., Hansen J.L., Freeborn B., Soukup J.K., Scaringe S.A., Strobel S.A., Moore P.B., Steitz T.A.
Nat. Struct. Biol. 9:225-230(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (3.1 ANGSTROMS) OF THE 50S SUBUNIT.
Strain: ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809.
[8]"The kink-turn: a new RNA secondary structure motif."
Klein D.J., Schmeing T.M., Moore P.B., Steitz T.A.
EMBO J. 20:4214-4221(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.4 ANGSTROMS) OF THE 50S SUBUNIT.
Strain: ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809.
[9]"The structures of four macrolide antibiotics bound to the large ribosomal subunit."
Hansen J.L., Ippolito J.A., Ban N., Nissen P., Moore P.B., Steitz T.A.
Mol. Cell 10:117-128(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (3.0 ANGSTROMS) OF THE 50S SUBUNIT IN COMPLEX WITH FOUR MACROLIDE ANTIBIOTICS.
Strain: ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809.
[10]"Structural insights into peptide bond formation."
Hansen J.L., Schmeing T.M., Moore P.B., Steitz T.A.
Proc. Natl. Acad. Sci. U.S.A. 99:11670-11675(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.8 ANGSTROMS) OF THE 50S SUBUNIT.
Strain: ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809.
[11]"Structures of five antibiotics bound at the peptidyl transferase center of the large ribosomal subunit."
Hansen J.L., Moore P.B., Steitz T.A.
J. Mol. Biol. 330:1061-1075(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (3.0 ANGSTROMS) OF THE 50S SUBUNIT IN COMPLEX WITH FIVE ANTIBIOTICS AT THE PEPTIDYL TRANSFERASE CENTER.
Strain: ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809.
[12]"Structures of deacylated tRNA mimics bound to the E site of the large ribosomal subunit."
Schmeing T.M., Moore P.B., Steitz T.A.
RNA 9:1345-1352(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.9 ANGSTROMS) OF THE 50S SUBUNIT WITH TWO DIFFERENT E SITE SUBSTRATES.
[13]"Revisiting the Haloarcula marismortui 50S ribosomal subunit model."
Gabdulkhakov A., Nikonov S., Garber M.
Acta Crystallogr. D 69:997-1004(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.4 ANGSTROMS) OF THE 50S SUBUNIT.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
J05222 Genomic DNA. Translation: AAA86861.1.
AY596297 Genomic DNA. Translation: AAV46526.1.
PIRR5HS23. E35063.
RefSeqYP_136232.1. NC_006396.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1FFKX-ray2.40P2-85[»]
1JJ2X-ray2.40R2-85[»]
1K73X-ray3.01T2-85[»]
1K8AX-ray3.00T2-85[»]
1K9MX-ray3.00T2-85[»]
1KC8X-ray3.01T2-85[»]
1KD1X-ray3.00T2-85[»]
1KQSX-ray3.10R2-85[»]
1M1KX-ray3.20T2-85[»]
1M90X-ray2.80T2-85[»]
1N8RX-ray3.00T2-85[»]
1NJIX-ray3.00T2-85[»]
1Q7YX-ray3.20T2-85[»]
1Q81X-ray2.95T2-85[»]
1Q82X-ray2.98T2-85[»]
1Q86X-ray3.00T2-85[»]
1QVFX-ray3.10R2-85[»]
1QVGX-ray2.90R2-85[»]
1S72X-ray2.40S1-85[»]
1VQ4X-ray2.70S1-85[»]
1VQ5X-ray2.60S1-85[»]
1VQ6X-ray2.70S1-85[»]
1VQ7X-ray2.50S1-85[»]
1VQ8X-ray2.20S1-85[»]
1VQ9X-ray2.40S1-85[»]
1VQKX-ray2.30S1-85[»]
1VQLX-ray2.30S1-85[»]
1VQMX-ray2.30S1-85[»]
1VQNX-ray2.40S1-85[»]
1VQOX-ray2.20S1-85[»]
1VQPX-ray2.25S1-85[»]
1W2BX-ray3.50R2-85[»]
1YHQX-ray2.40S1-85[»]
1YI2X-ray2.65S1-85[»]
1YIJX-ray2.60S1-85[»]
1YITX-ray2.80S1-85[»]
1YJ9X-ray2.90S1-85[»]
1YJNX-ray3.00S1-85[»]
1YJWX-ray2.90S1-85[»]
2B9NX-ray6.76X2-85[»]
2B9PX-ray6.46X2-85[»]
2OTJX-ray2.90S1-85[»]
2OTLX-ray2.70S1-85[»]
2QA4X-ray3.00S1-85[»]
2QEXX-ray2.90S1-85[»]
3CC2X-ray2.40S1-85[»]
3CC4X-ray2.70S1-85[»]
3CC7X-ray2.70S1-85[»]
3CCEX-ray2.75S1-85[»]
3CCJX-ray2.70S1-85[»]
3CCLX-ray2.90S1-85[»]
3CCMX-ray2.55S1-85[»]
3CCQX-ray2.90S1-85[»]
3CCRX-ray3.00S1-85[»]
3CCSX-ray2.95S1-85[»]
3CCUX-ray2.80S1-85[»]
3CCVX-ray2.90S1-85[»]
3CD6X-ray2.75S1-85[»]
3CMAX-ray2.80S1-85[»]
3CMEX-ray2.95S1-85[»]
3CPWX-ray2.70R1-85[»]
3CXCX-ray3.00R2-85[»]
3G4SX-ray3.20S2-82[»]
3G6EX-ray2.70S2-82[»]
3G71X-ray2.85S2-82[»]
3I55X-ray3.11S1-85[»]
3I56X-ray2.90S1-85[»]
3OW2X-ray2.70R2-82[»]
4ADXelectron microscopy6.60S1-85[»]
4HUBX-ray2.40S1-85[»]
ProteinModelPortalP12732.
SMRP12732. Positions 2-85.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING272569.rrnAC1609.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAV46526; AAV46526; rrnAC1609.
GeneID3128415.
KEGGhma:rrnAC1609.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0089.
HOGENOMHOG000231364.
KOK02892.
OMAQNTLTFI.

Enzyme and pathway databases

BioCycHMAR272569:GJDH-1465-MONOMER.

Family and domain databases

Gene3D3.30.70.330. 1 hit.
HAMAPMF_01369_A. Ribosomal_L23_A.
InterProIPR012677. Nucleotide-bd_a/b_plait.
IPR019985. Ribosomal_L23.
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR001014. Ribosomal_L23/L25_CS.
IPR013025. Ribosomal_L25/23.
[Graphical view]
PfamPF00276. Ribosomal_L23. 1 hit.
[Graphical view]
SUPFAMSSF54189. SSF54189. 1 hit.
TIGRFAMsTIGR03636. L23_arch. 1 hit.
PROSITEPS00050. RIBOSOMAL_L23. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceP12732.

Entry information

Entry nameRL23_HALMA
AccessionPrimary (citable) accession number: P12732
Secondary accession number(s): Q5V1S6
Entry history
Integrated into UniProtKB/Swiss-Prot: October 1, 1989
Last sequence update: January 23, 2007
Last modified: July 9, 2014
This is version 116 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references